Wall clock time and date at job start Tue Mar 31 2020 03:18:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09002 * 109.47070 * 2 1
4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3
5 5 C 1.53005 * 109.46867 * 175.00027 * 4 2 1
6 6 C 1.53008 * 109.46774 * 180.02562 * 5 4 2
7 7 C 1.53005 * 109.46774 * 180.02562 * 6 5 4
8 8 N 1.46492 * 109.46855 * 179.97438 * 7 6 5
9 9 C 1.36934 * 120.00299 * 180.02562 * 8 7 6
10 10 H 1.07998 * 119.99658 * 359.97438 * 9 8 7
11 11 C 1.38813 * 120.00555 * 180.02562 * 9 8 7
12 12 N 1.31615 * 119.99515 * 359.97438 * 11 9 8
13 13 Si 1.86799 * 119.99993 * 179.97438 * 11 9 8
14 14 H 1.48497 * 109.47454 * 359.97438 * 13 11 9
15 15 H 1.48501 * 109.46994 * 119.99898 * 13 11 9
16 16 H 1.48498 * 109.47188 * 239.99605 * 13 11 9
17 17 N 1.46499 * 109.46799 * 120.00100 * 2 1 3
18 18 C 1.34778 * 119.99771 * 274.99826 * 17 2 1
19 19 O 1.21540 * 120.00160 * 0.02562 * 18 17 2
20 20 C 1.48006 * 119.99886 * 180.02562 * 18 17 2
21 21 N 1.34187 * 126.69988 * 359.68761 * 20 18 17
22 22 N 1.28990 * 107.25199 * 179.83729 * 21 20 18
23 23 N 1.28721 * 108.98427 * 0.43530 * 22 21 20
24 24 C 1.46497 * 125.31564 * 179.68969 * 23 22 21
25 25 N 1.28862 * 109.35910 * 359.72118 * 23 22 21
26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3
27 27 H 1.08996 * 109.47407 * 300.00400 * 1 2 3
28 28 H 1.09000 * 109.46986 * 60.00171 * 1 2 3
29 29 H 1.08990 * 109.47170 * 295.00238 * 4 2 1
30 30 H 1.09001 * 109.46952 * 55.00315 * 4 2 1
31 31 H 1.09000 * 109.47443 * 300.00098 * 5 4 2
32 32 H 1.09001 * 109.47099 * 60.00379 * 5 4 2
33 33 H 1.09000 * 109.47044 * 300.00132 * 6 5 4
34 34 H 1.09001 * 109.47171 * 60.00211 * 6 5 4
35 35 H 1.09001 * 109.46908 * 300.00434 * 7 6 5
36 36 H 1.08996 * 109.46687 * 59.99974 * 7 6 5
37 37 H 0.96999 * 120.00405 * 0.02562 * 8 7 6
38 38 H 0.97006 * 119.99411 * 179.97438 * 12 11 9
39 39 H 0.96998 * 120.00630 * 95.00428 * 17 2 1
40 40 H 1.09001 * 109.47343 * 270.04132 * 24 23 22
41 41 H 1.09002 * 109.47059 * 30.03617 * 24 23 22
42 42 H 1.09000 * 109.47226 * 150.03583 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0401 -0.7213 -1.2492
5 6 3.5649 -0.6133 -1.3136
6 6 4.0749 -1.3341 -2.5632
7 6 5.5998 -1.2267 -2.6272
8 7 6.0882 -1.9173 -3.8232
9 6 7.4303 -1.9546 -4.0924
10 1 8.1287 -1.4745 -3.4231
11 6 7.8930 -2.6086 -5.2260
12 7 7.0417 -3.1933 -6.0419
13 14 9.7238 -2.6588 -5.5934
14 1 10.4623 -1.9316 -4.5299
15 1 10.1813 -4.0709 -5.6374
16 1 9.9833 -2.0133 -6.9054
17 7 2.0183 -0.6906 1.1962
18 6 2.1470 -0.0182 2.3571
19 8 1.8575 1.1609 2.4118
20 6 2.6408 -0.7158 3.5655
21 7 2.9914 -2.0077 3.6586
22 7 3.3674 -2.2153 4.8749
23 7 3.2578 -1.1187 5.5401
24 6 3.5831 -0.9526 6.9588
25 7 2.8167 -0.1901 4.7631
26 1 -0.3633 -1.0277 -0.0005
27 1 -0.3634 0.5139 0.8899
28 1 -0.3633 0.5138 -0.8900
29 1 1.7517 -1.7715 -1.2055
30 1 1.6055 -0.2618 -2.1369
31 1 3.8533 0.4369 -1.3572
32 1 3.9995 -1.0728 -0.4258
33 1 3.7865 -2.3844 -2.5199
34 1 3.6403 -0.8743 -3.4507
35 1 5.8885 -0.1765 -2.6701
36 1 6.0340 -1.6868 -1.7396
37 1 5.4608 -2.3483 -4.4246
38 1 7.3651 -3.6500 -6.8343
39 1 2.2490 -1.6318 1.1527
40 1 2.6987 -1.1604 7.5611
41 1 4.3797 -1.6446 7.2323
42 1 3.9130 0.0706 7.1386
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001174759637.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:18:43
Heat of formation + Delta-G solvation = 90.032342 kcal
Electronic energy + Delta-G solvation = -22916.032281 eV
Core-core repulsion = 19355.483955 eV
Total energy + Delta-G solvation = -3560.548326 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 296.170 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-44.80376 -40.07602 -37.06225 -35.67631 -35.26737 -33.57442 -33.27468 -31.67660
-30.33475 -29.16483 -27.43298 -25.74245 -24.19260 -23.48357 -22.32079 -21.46700
-20.82343 -20.61931 -18.82471 -18.02730 -17.22927 -16.96067 -16.65023 -15.35571
-15.14220 -14.75208 -14.57169 -14.47494 -14.09528 -13.90993 -13.78582 -13.50753
-13.14065 -12.94748 -12.91170 -12.56305 -12.39108 -11.75550 -11.56192 -11.51540
-11.46799 -11.26150 -10.99896 -10.80489 -10.79613 -10.68174 -10.59111 -10.38204
-10.25457 -9.93682 -9.64443 -9.37060 -8.82495 -6.86114 -5.71986 -3.00004
0.58937 1.08256 1.32158 2.51145 2.79076 3.46401 3.51758 3.54296
3.61710 3.71230 4.28610 4.41416 4.52383 4.60667 4.66714 4.83077
4.88334 4.98528 5.18492 5.26640 5.39071 5.45066 5.52610 5.57978
5.61897 5.70535 5.78480 5.89337 5.96256 6.11792 6.15018 6.34995
6.35447 6.42920 6.51462 6.94870 6.98714 7.07082 7.67278 7.75110
7.82657 8.47640 9.58339 10.18010 10.52602 11.51291
Molecular weight = 296.17amu
Principal moments of inertia in cm(-1)
A = 0.015569 B = 0.002584 C = 0.002292
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1797.983237 B =10833.256458 C =12211.421104
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.142 3.858
3 H 0.094 0.906
4 C -0.127 4.127
5 C -0.117 4.117
6 C -0.125 4.125
7 C 0.152 3.848
8 N -0.735 5.735
9 C -0.236 4.236
10 H 0.070 0.930
11 C -0.017 4.017
12 N -0.935 5.935
13 Si 0.907 3.093
14 H -0.281 1.281
15 H -0.292 1.292
16 H -0.292 1.292
17 N -0.697 5.697
18 C 0.619 3.381
19 O -0.509 6.509
20 C 0.129 3.871
21 N -0.251 5.251
22 N -0.053 5.053
23 N -0.135 5.135
24 C 0.091 3.909
25 N -0.248 5.248
26 H 0.059 0.941
27 H 0.059 0.941
28 H 0.071 0.929
29 H 0.072 0.928
30 H 0.084 0.916
31 H 0.062 0.938
32 H 0.061 0.939
33 H 0.061 0.939
34 H 0.061 0.939
35 H 0.016 0.984
36 H 0.016 0.984
37 H 0.383 0.617
38 H 0.254 0.746
39 H 0.412 0.588
40 H 0.106 0.894
41 H 0.117 0.883
42 H 0.115 0.885
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.345 4.889 25.341 29.527
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C 0.039 3.961
3 H 0.112 0.888
4 C -0.165 4.165
5 C -0.155 4.155
6 C -0.163 4.163
7 C 0.024 3.976
8 N -0.379 5.379
9 C -0.368 4.368
10 H 0.088 0.912
11 C -0.213 4.213
12 N -0.584 5.584
13 Si 0.738 3.262
14 H -0.206 1.206
15 H -0.219 1.219
16 H -0.219 1.219
17 N -0.350 5.350
18 C 0.398 3.602
19 O -0.381 6.381
20 C -0.155 4.155
21 N -0.126 5.126
22 N -0.047 5.047
23 N -0.048 5.048
24 C -0.048 4.048
25 N -0.102 5.102
26 H 0.078 0.922
27 H 0.078 0.922
28 H 0.089 0.911
29 H 0.090 0.910
30 H 0.102 0.898
31 H 0.081 0.919
32 H 0.080 0.920
33 H 0.080 0.920
34 H 0.080 0.920
35 H 0.034 0.966
36 H 0.034 0.966
37 H 0.217 0.783
38 H 0.064 0.936
39 H 0.248 0.752
40 H 0.124 0.876
41 H 0.136 0.864
42 H 0.133 0.867
Dipole moment (debyes) X Y Z Total
from point charges -14.159 5.335 25.776 29.889
hybrid contribution 0.865 -0.371 -0.536 1.083
sum -13.294 4.964 25.240 28.956
Atomic orbital electron populations
1.22199 0.94872 1.02468 1.02772 1.21214 0.94082 0.97820 0.83024
0.88769 1.21958 0.96982 1.01194 0.96371 1.21552 0.93897 1.01186
0.98847 1.21721 0.97218 1.00357 0.97011 1.20652 0.91070 0.95297
0.90552 1.42396 1.05325 1.64980 1.25198 1.19302 0.83947 1.28183
1.05344 0.91208 1.24750 0.97717 1.01062 0.97751 1.69676 1.32641
1.40969 1.15101 0.86108 0.85125 0.77208 0.77741 1.20581 1.21872
1.21883 1.45848 1.65755 1.14829 1.08524 1.16074 0.78187 0.85341
0.80603 1.90858 1.49150 1.14267 1.83804 1.25338 1.05580 0.89946
0.94650 1.76164 1.13587 1.13926 1.08895 1.78971 1.16050 1.10562
0.99089 1.50277 1.38063 1.03510 1.12923 1.22583 1.04686 1.06966
0.70576 1.75078 1.15317 1.18187 1.01658 0.92161 0.92155 0.91055
0.90980 0.89768 0.91891 0.92015 0.92023 0.92013 0.96590 0.96593
0.78341 0.93620 0.75177 0.87555 0.86419 0.86670
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.39 9.48 37.16 0.35 -1.03 16
2 C 0.14 1.36 2.57 -67.93 -0.17 1.19 16
3 H 0.09 1.02 7.58 -51.93 -0.39 0.63 16
4 C -0.13 -1.22 4.75 -26.73 -0.13 -1.35 16
5 C -0.12 -1.46 5.10 -26.72 -0.14 -1.59 16
6 C -0.13 -2.01 5.33 -26.72 -0.14 -2.16 16
7 C 0.15 3.19 6.26 -4.04 -0.03 3.17 16
8 N -0.74 -19.49 5.60 -59.91 -0.34 -19.82 16
9 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16
10 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16
11 C -0.02 -0.51 5.50 -17.43 -0.10 -0.61 16
12 N -0.93 -28.99 13.06 55.49 0.72 -28.27 16
13 Si 0.91 22.97 29.55 -169.99 -5.02 17.94 16
14 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16
15 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16
16 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16
17 N -0.70 -7.13 4.53 -54.70 -0.25 -7.38 16
18 C 0.62 7.73 7.80 -12.26 -0.10 7.64 16
19 O -0.51 -7.70 16.76 5.33 0.09 -7.61 16
20 C 0.13 1.58 8.14 -156.25 -1.27 0.31 16
21 N -0.25 -3.00 12.26 32.10 0.39 -2.61 16
22 N -0.05 -0.56 13.23 60.35 0.80 0.24 16
23 N -0.13 -1.14 4.39 -16.65 -0.07 -1.22 16
24 C 0.09 0.19 11.62 59.85 0.70 0.89 16
25 N -0.25 -2.83 12.16 32.11 0.39 -2.44 16
26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16
28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16
30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16
31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16
32 H 0.06 0.78 7.75 -51.93 -0.40 0.38 16
33 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16
34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16
35 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16
36 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16
37 H 0.38 10.55 7.67 -40.82 -0.31 10.24 16
38 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16
39 H 0.41 3.77 8.35 -40.82 -0.34 3.43 16
40 H 0.11 0.01 8.14 -51.93 -0.42 -0.42 16
41 H 0.12 0.01 8.14 -51.93 -0.42 -0.41 16
42 H 0.11 0.08 8.14 -51.93 -0.42 -0.34 16
LS Contribution 362.76 15.07 5.47 5.47
Total: -1.00 -36.72 362.76 -5.48 -42.20
By element:
Atomic # 1 Polarization: 10.58 SS G_CDS: -6.49 Total: 4.09 kcal
Atomic # 6 Polarization: 0.57 SS G_CDS: -1.17 Total: -0.60 kcal
Atomic # 7 Polarization: -63.14 SS G_CDS: 1.65 Total: -61.48 kcal
Atomic # 8 Polarization: -7.70 SS G_CDS: 0.09 Total: -7.61 kcal
Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.94 kcal
Total LS contribution 5.47 Total: 5.47 kcal
Total: -36.72 -5.48 -42.20 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001174759637.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 132.229 kcal
(2) G-P(sol) polarization free energy of solvation -36.717 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.512 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.480 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.197 kcal
(6) G-S(sol) free energy of system = (1) + (5) 90.032 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds