Wall clock time and date at job start Tue Mar 31 2020 03:18:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09002 * 109.47070 * 2 1
4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3
5 5 C 1.53005 * 109.46867 * 175.00027 * 4 2 1
6 6 C 1.53008 * 109.46774 * 180.02562 * 5 4 2
7 7 C 1.53005 * 109.46774 * 180.02562 * 6 5 4
8 8 N 1.46492 * 109.46855 * 179.97438 * 7 6 5
9 9 C 1.36934 * 120.00299 * 180.02562 * 8 7 6
10 10 H 1.07998 * 119.99658 * 359.97438 * 9 8 7
11 11 C 1.38813 * 120.00555 * 180.02562 * 9 8 7
12 12 N 1.31615 * 119.99515 * 359.97438 * 11 9 8
13 13 Si 1.86799 * 119.99993 * 179.97438 * 11 9 8
14 14 H 1.48497 * 109.47454 * 359.97438 * 13 11 9
15 15 H 1.48501 * 109.46994 * 119.99898 * 13 11 9
16 16 H 1.48498 * 109.47188 * 239.99605 * 13 11 9
17 17 N 1.46499 * 109.46799 * 120.00100 * 2 1 3
18 18 C 1.34778 * 119.99771 * 274.99826 * 17 2 1
19 19 O 1.21540 * 120.00160 * 0.02562 * 18 17 2
20 20 C 1.48006 * 119.99886 * 180.02562 * 18 17 2
21 21 N 1.34187 * 126.69988 * 359.68761 * 20 18 17
22 22 N 1.28990 * 107.25199 * 179.83729 * 21 20 18
23 23 N 1.28721 * 108.98427 * 0.43530 * 22 21 20
24 24 C 1.46497 * 125.31564 * 179.68969 * 23 22 21
25 25 N 1.28862 * 109.35910 * 359.72118 * 23 22 21
26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3
27 27 H 1.08996 * 109.47407 * 300.00400 * 1 2 3
28 28 H 1.09000 * 109.46986 * 60.00171 * 1 2 3
29 29 H 1.08990 * 109.47170 * 295.00238 * 4 2 1
30 30 H 1.09001 * 109.46952 * 55.00315 * 4 2 1
31 31 H 1.09000 * 109.47443 * 300.00098 * 5 4 2
32 32 H 1.09001 * 109.47099 * 60.00379 * 5 4 2
33 33 H 1.09000 * 109.47044 * 300.00132 * 6 5 4
34 34 H 1.09001 * 109.47171 * 60.00211 * 6 5 4
35 35 H 1.09001 * 109.46908 * 300.00434 * 7 6 5
36 36 H 1.08996 * 109.46687 * 59.99974 * 7 6 5
37 37 H 0.96999 * 120.00405 * 0.02562 * 8 7 6
38 38 H 0.97006 * 119.99411 * 179.97438 * 12 11 9
39 39 H 0.96998 * 120.00630 * 95.00428 * 17 2 1
40 40 H 1.09001 * 109.47343 * 270.04132 * 24 23 22
41 41 H 1.09002 * 109.47059 * 30.03617 * 24 23 22
42 42 H 1.09000 * 109.47226 * 150.03583 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0401 -0.7213 -1.2492
5 6 3.5649 -0.6133 -1.3136
6 6 4.0749 -1.3341 -2.5632
7 6 5.5998 -1.2267 -2.6272
8 7 6.0882 -1.9173 -3.8232
9 6 7.4303 -1.9546 -4.0924
10 1 8.1287 -1.4745 -3.4231
11 6 7.8930 -2.6086 -5.2260
12 7 7.0417 -3.1933 -6.0419
13 14 9.7238 -2.6588 -5.5934
14 1 10.4623 -1.9316 -4.5299
15 1 10.1813 -4.0709 -5.6374
16 1 9.9833 -2.0133 -6.9054
17 7 2.0183 -0.6906 1.1962
18 6 2.1470 -0.0182 2.3571
19 8 1.8575 1.1609 2.4118
20 6 2.6408 -0.7158 3.5655
21 7 2.9914 -2.0077 3.6586
22 7 3.3674 -2.2153 4.8749
23 7 3.2578 -1.1187 5.5401
24 6 3.5831 -0.9526 6.9588
25 7 2.8167 -0.1901 4.7631
26 1 -0.3633 -1.0277 -0.0005
27 1 -0.3634 0.5139 0.8899
28 1 -0.3633 0.5138 -0.8900
29 1 1.7517 -1.7715 -1.2055
30 1 1.6055 -0.2618 -2.1369
31 1 3.8533 0.4369 -1.3572
32 1 3.9995 -1.0728 -0.4258
33 1 3.7865 -2.3844 -2.5199
34 1 3.6403 -0.8743 -3.4507
35 1 5.8885 -0.1765 -2.6701
36 1 6.0340 -1.6868 -1.7396
37 1 5.4608 -2.3483 -4.4246
38 1 7.3651 -3.6500 -6.8343
39 1 2.2490 -1.6318 1.1527
40 1 2.6987 -1.1604 7.5611
41 1 4.3797 -1.6446 7.2323
42 1 3.9130 0.0706 7.1386
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001174759637.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:18:43
Heat of formation + Delta-G solvation = 62.374967 kcal
Electronic energy + Delta-G solvation = -22917.231594 eV
Core-core repulsion = 19355.483955 eV
Total energy + Delta-G solvation = -3561.747639 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 296.170 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-45.57774 -40.99973 -38.11255 -36.88406 -36.34106 -34.81116 -34.38076 -33.05628
-31.76593 -29.66732 -28.80916 -26.60337 -25.87240 -24.23213 -23.68520 -22.53481
-22.00642 -21.65195 -19.60712 -19.12123 -18.75049 -17.87257 -17.56152 -16.69024
-16.33128 -16.21857 -15.63184 -15.37451 -15.27851 -15.23565 -14.59812 -14.41540
-14.15943 -14.14249 -14.03684 -13.27485 -13.20464 -13.04183 -12.89617 -12.85116
-12.45029 -12.38011 -12.30824 -12.27349 -12.11326 -11.88888 -11.81343 -11.63166
-11.51481 -11.40944 -11.39044 -10.94972 -10.25998 -9.01565 -7.96963 -5.26107
-0.20047 0.22467 0.78979 1.46218 1.47539 1.57839 1.73017 1.86567
2.54994 2.78541 3.05380 3.36353 3.60164 3.95446 4.02893 4.05161
4.07607 4.15533 4.21840 4.36158 4.41100 4.48880 4.59652 4.62308
4.66828 4.75912 4.89049 4.93979 4.94678 5.00257 5.03026 5.08603
5.29253 5.33620 5.37631 5.46203 5.52898 5.55040 6.21159 6.26378
6.82631 6.99763 7.31843 8.08586 8.32330 9.26942
Molecular weight = 296.17amu
Principal moments of inertia in cm(-1)
A = 0.015569 B = 0.002584 C = 0.002292
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1797.983237 B =10833.256458 C =12211.421104
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.159 4.159
2 C 0.143 3.857
3 H 0.082 0.918
4 C -0.117 4.117
5 C -0.109 4.109
6 C -0.112 4.112
7 C 0.147 3.853
8 N -0.749 5.749
9 C -0.249 4.249
10 H 0.072 0.928
11 C -0.077 4.077
12 N -0.969 5.969
13 Si 0.976 3.024
14 H -0.268 1.268
15 H -0.290 1.290
16 H -0.290 1.290
17 N -0.686 5.686
18 C 0.618 3.382
19 O -0.543 6.543
20 C 0.114 3.886
21 N -0.267 5.267
22 N -0.062 5.062
23 N -0.115 5.115
24 C 0.072 3.928
25 N -0.265 5.265
26 H 0.070 0.930
27 H 0.046 0.954
28 H 0.085 0.915
29 H 0.084 0.916
30 H 0.097 0.903
31 H 0.060 0.940
32 H 0.060 0.940
33 H 0.062 0.938
34 H 0.061 0.939
35 H 0.014 0.986
36 H 0.014 0.986
37 H 0.375 0.625
38 H 0.252 0.748
39 H 0.418 0.582
40 H 0.132 0.868
41 H 0.141 0.859
42 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.376 4.853 26.582 30.608
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.217 4.217
2 C 0.040 3.960
3 H 0.100 0.900
4 C -0.155 4.155
5 C -0.147 4.147
6 C -0.150 4.150
7 C 0.021 3.979
8 N -0.392 5.392
9 C -0.381 4.381
10 H 0.090 0.910
11 C -0.270 4.270
12 N -0.620 5.620
13 Si 0.805 3.195
14 H -0.192 1.192
15 H -0.217 1.217
16 H -0.217 1.217
17 N -0.338 5.338
18 C 0.398 3.602
19 O -0.417 6.417
20 C -0.170 4.170
21 N -0.141 5.141
22 N -0.056 5.056
23 N -0.031 5.031
24 C -0.065 4.065
25 N -0.120 5.120
26 H 0.089 0.911
27 H 0.065 0.935
28 H 0.104 0.896
29 H 0.103 0.897
30 H 0.115 0.885
31 H 0.079 0.921
32 H 0.078 0.922
33 H 0.081 0.919
34 H 0.080 0.920
35 H 0.032 0.968
36 H 0.032 0.968
37 H 0.206 0.794
38 H 0.061 0.939
39 H 0.256 0.744
40 H 0.150 0.850
41 H 0.159 0.841
42 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges -14.190 5.286 27.051 31.001
hybrid contribution 0.890 -0.345 -0.771 1.227
sum -13.300 4.942 26.281 29.866
Atomic orbital electron populations
1.22149 0.93548 1.03193 1.02838 1.21232 0.95038 0.97084 0.82608
0.90015 1.21875 0.94590 1.02190 0.96801 1.21464 0.95997 1.00407
0.96814 1.21597 0.93599 1.00977 0.98815 1.20862 0.94426 0.94281
0.88339 1.42634 1.04534 1.65395 1.26602 1.19683 0.85333 1.27686
1.05374 0.90984 1.25619 1.02325 1.01208 0.97807 1.69824 1.34622
1.41996 1.15551 0.85037 0.79791 0.77111 0.77608 1.19206 1.21716
1.21743 1.45864 1.64794 1.15023 1.08147 1.16180 0.77825 0.84994
0.81152 1.90830 1.50923 1.15586 1.84398 1.25285 1.06557 0.90226
0.94939 1.76114 1.14297 1.13904 1.09790 1.78887 1.16478 1.11285
0.98943 1.50821 1.35720 1.02328 1.14187 1.23268 1.06770 1.08811
0.67608 1.75041 1.15981 1.19144 1.01835 0.91085 0.93509 0.89576
0.89698 0.88457 0.92124 0.92157 0.91946 0.91986 0.96787 0.96798
0.79352 0.93869 0.74450 0.84997 0.84077 0.85066
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.42 9.48 71.98 0.68 -1.74 16
2 C 0.14 2.58 2.57 44.99 0.12 2.70 16
3 H 0.08 1.73 7.58 -2.39 -0.02 1.71 16
4 C -0.12 -2.01 4.75 30.60 0.15 -1.86 16
5 C -0.11 -2.57 5.10 30.60 0.16 -2.41 16
6 C -0.11 -3.49 5.33 30.60 0.16 -3.33 16
7 C 0.15 6.15 6.26 86.38 0.54 6.69 16
8 N -0.75 -39.91 5.60 -343.47 -1.92 -41.84 16
9 C -0.25 -14.52 9.99 84.03 0.84 -13.68 16
10 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16
11 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16
12 N -0.97 -60.55 13.06 21.65 0.28 -60.27 16
13 Si 0.98 47.17 29.55 68.60 2.03 49.20 16
14 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16
15 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16
16 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16
17 N -0.69 -13.60 4.53 -445.24 -2.02 -15.62 16
18 C 0.62 15.52 7.80 86.83 0.68 16.19 16
19 O -0.54 -16.69 16.76 -3.84 -0.06 -16.76 16
20 C 0.11 2.77 8.14 137.15 1.12 3.89 16
21 N -0.27 -6.29 12.26 -52.37 -0.64 -6.93 16
22 N -0.06 -1.26 13.23 37.02 0.49 -0.77 16
23 N -0.12 -1.81 4.39 -206.59 -0.91 -2.72 16
24 C 0.07 0.14 11.62 127.77 1.49 1.62 16
25 N -0.26 -5.90 12.16 -52.32 -0.64 -6.53 16
26 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16
27 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16
28 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16
29 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16
30 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16
31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16
32 H 0.06 1.45 7.75 -2.39 -0.02 1.43 16
33 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16
34 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16
35 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16
36 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16
37 H 0.37 20.88 7.67 -92.71 -0.71 20.17 16
38 H 0.25 15.14 8.31 -92.70 -0.77 14.37 16
39 H 0.42 7.29 8.35 -92.71 -0.77 6.51 16
40 H 0.13 -0.34 8.14 -2.39 -0.02 -0.36 16
41 H 0.14 -0.36 8.14 -2.39 -0.02 -0.38 16
42 H 0.13 -0.12 8.14 -2.39 -0.02 -0.14 16
Total: -1.00 -79.34 362.76 2.55 -76.79
By element:
Atomic # 1 Polarization: 21.94 SS G_CDS: -0.45 Total: 21.49 kcal
Atomic # 6 Polarization: -2.43 SS G_CDS: 6.39 Total: 3.96 kcal
Atomic # 7 Polarization: -129.33 SS G_CDS: -5.35 Total: -134.68 kcal
Atomic # 8 Polarization: -16.69 SS G_CDS: -0.06 Total: -16.76 kcal
Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal
Total: -79.34 2.55 -76.79 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001174759637.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 139.165 kcal
(2) G-P(sol) polarization free energy of solvation -79.342 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.823 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.552 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.790 kcal
(6) G-S(sol) free energy of system = (1) + (5) 62.375 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds