Wall clock time and date at job start Tue Mar 31 2020 03:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86808 * 119.99859 * 2 1 4 4 H 1.48498 * 109.46560 * 239.99634 * 3 2 1 5 5 H 1.48497 * 109.46890 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47094 * 119.99845 * 3 2 1 7 7 C 1.38805 * 119.99918 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99860 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00389 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47551 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47478 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47000 * 180.02562 * 12 11 10 14 14 C 1.53006 * 109.46626 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.46623 * 179.97438 * 14 13 12 16 16 N 1.46506 * 109.46684 * 179.97438 * 15 14 13 17 17 C 1.34777 * 119.99873 * 179.97438 * 16 15 14 18 18 O 1.21284 * 119.99754 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.00137 * 180.02562 * 17 16 15 20 20 C 1.52997 * 119.80864 * 250.98585 * 19 17 16 21 21 C 1.53001 * 60.65568 * 247.68900 * 20 19 17 22 22 H 1.08992 * 120.24748 * 112.13608 * 21 20 19 23 23 C 1.54483 * 118.06365 * 269.59186 * 21 20 19 24 24 O 1.44432 * 104.80052 * 86.82702 * 23 21 20 25 25 C 1.43874 * 105.56641 * 319.94148 * 24 23 21 26 26 H 0.97000 * 120.00284 * 0.02562 * 1 2 3 27 27 H 0.96999 * 119.99757 * 0.02562 * 9 7 2 28 28 H 1.09004 * 109.46875 * 60.00238 * 10 9 7 29 29 H 1.09004 * 109.47522 * 300.00387 * 10 9 7 30 30 H 1.09004 * 109.46862 * 60.00198 * 11 10 9 31 31 H 1.09000 * 109.47250 * 300.00222 * 11 10 9 32 32 H 1.08993 * 109.46765 * 59.99818 * 12 11 10 33 33 H 1.09000 * 109.46866 * 300.00218 * 12 11 10 34 34 H 1.08993 * 109.47839 * 60.00073 * 13 12 11 35 35 H 1.09000 * 109.47160 * 299.99635 * 13 12 11 36 36 H 1.09000 * 109.47050 * 299.99699 * 14 13 12 37 37 H 1.09001 * 109.46801 * 59.99811 * 14 13 12 38 38 H 1.09000 * 109.47486 * 299.99829 * 15 14 13 39 39 H 1.09001 * 109.47362 * 60.00551 * 15 14 13 40 40 H 0.96999 * 120.00080 * 0.02562 * 16 15 14 41 41 H 1.09001 * 117.43655 * 355.36557 * 20 19 17 42 42 H 1.09003 * 117.43642 * 140.01135 * 20 19 17 43 43 H 1.08994 * 110.37376 * 205.65042 * 23 21 20 44 44 H 1.08999 * 110.37339 * 327.99670 * 23 21 20 45 45 H 1.09000 * 109.55480 * 281.17194 * 25 24 23 46 46 H 1.08999 * 110.91561 * 159.01753 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6567 0.0005 11 6 1.0638 -4.8196 -0.0001 12 6 1.8288 -6.1447 0.0005 13 6 0.8345 -7.3076 -0.0008 14 6 1.5996 -8.6326 0.0005 15 6 0.6053 -9.7955 -0.0001 16 7 1.3379 -11.0643 0.0005 17 6 0.6640 -12.2315 0.0006 18 8 -0.5488 -12.2314 -0.0003 19 6 1.4175 -13.5365 0.0018 20 6 1.4241 -14.4121 -1.2528 21 6 0.7008 -14.9054 0.0020 22 1 -0.3854 -14.9953 0.0100 23 6 1.5021 -15.7486 1.0186 24 8 2.1282 -14.7805 1.8886 25 6 2.5582 -13.7100 1.0289 26 1 -0.4850 0.8400 -0.0004 27 1 0.3556 -2.3880 -0.0002 28 1 2.6846 -3.7145 0.8906 29 1 2.6847 -3.7145 -0.8894 30 1 0.4375 -4.7617 -0.8904 31 1 0.4368 -4.7621 0.8896 32 1 2.4548 -6.2024 0.8909 33 1 2.4561 -6.2025 -0.8890 34 1 0.2089 -7.2498 -0.8913 35 1 0.2069 -7.2500 0.8886 36 1 2.2275 -8.6905 -0.8886 37 1 2.2250 -8.6902 0.8914 38 1 -0.0223 -9.7375 0.8892 39 1 -0.0203 -9.7381 -0.8908 40 1 2.3079 -11.0642 0.0016 41 1 0.8090 -14.0902 -2.0931 42 1 2.3607 -14.9025 -1.5181 43 1 0.8328 -16.3933 1.5880 44 1 2.2583 -16.3432 0.5060 45 1 3.4820 -13.9950 0.5254 46 1 2.7020 -12.7899 1.5953 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178531592.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:39 Heat of formation + Delta-G solvation = -61.648964 kcal Electronic energy + Delta-G solvation = -22504.053878 eV Core-core repulsion = 19008.175750 eV Total energy + Delta-G solvation = -3495.878128 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.37610 -39.26451 -36.87303 -35.52072 -35.11460 -33.98162 -31.96304 -30.23970 -29.32480 -27.07126 -26.00226 -24.56207 -23.26207 -22.19732 -21.65738 -21.20304 -20.65932 -19.92751 -18.02801 -16.97141 -16.66518 -16.31685 -16.02698 -16.00031 -15.32539 -15.17416 -14.69122 -14.55627 -14.27498 -13.78480 -13.48906 -13.41415 -13.26396 -12.95178 -12.74752 -12.49911 -12.37031 -11.86072 -11.74942 -11.39459 -11.32916 -11.19329 -10.92216 -10.86193 -10.72787 -10.72196 -10.47830 -10.31618 -10.25993 -10.06271 -9.95285 -9.62871 -9.46293 -8.83254 -6.88034 -5.73015 -3.01552 2.04449 2.61550 2.85655 3.40382 3.46086 3.49859 3.51464 3.75876 3.85756 4.16935 4.36703 4.40859 4.51312 4.64077 4.70484 4.72900 4.91733 4.98752 5.00431 5.04199 5.12675 5.21192 5.22932 5.35738 5.38112 5.50889 5.55441 5.63038 5.68571 5.70983 5.92976 5.94993 6.05029 6.10758 6.12897 6.33648 6.34411 6.42206 6.49002 6.92411 6.96479 7.06763 7.72175 7.79951 8.46332 9.56826 10.16565 10.51074 11.50014 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.052830 B = 0.001596 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.873481 B =17534.654153 C =17758.203172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.735 5.735 10 C 0.152 3.848 11 C -0.127 4.127 12 C -0.113 4.113 13 C -0.116 4.116 14 C -0.130 4.130 15 C 0.117 3.883 16 N -0.724 5.724 17 C 0.559 3.441 18 O -0.535 6.535 19 C -0.215 4.215 20 C -0.106 4.106 21 C -0.157 4.157 22 H 0.133 0.867 23 C 0.072 3.928 24 O -0.367 6.367 25 C 0.087 3.913 26 H 0.255 0.745 27 H 0.383 0.617 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.401 0.599 41 H 0.111 0.889 42 H 0.107 0.893 43 H 0.102 0.898 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.566 -34.511 -1.254 34.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.087 0.913 9 N -0.379 5.379 10 C 0.025 3.975 11 C -0.165 4.165 12 C -0.151 4.151 13 C -0.154 4.154 14 C -0.168 4.168 15 C -0.006 4.006 16 N -0.375 5.375 17 C 0.345 3.655 18 O -0.411 6.411 19 C -0.218 4.218 20 C -0.143 4.143 21 C -0.176 4.176 22 H 0.151 0.849 23 C -0.005 4.005 24 O -0.286 6.286 25 C 0.010 3.990 26 H 0.065 0.935 27 H 0.217 0.783 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.236 0.764 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.120 0.880 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.830 -34.369 -0.995 34.721 hybrid contribution 0.521 1.120 -0.243 1.259 sum 5.350 -33.249 -1.238 33.700 Atomic orbital electron populations 1.69653 1.05120 1.25717 1.57858 1.24752 0.95544 0.97708 1.03133 0.86248 0.78497 0.83511 0.77824 1.21292 1.21663 1.21282 1.19216 0.91025 0.84312 1.42609 0.91270 1.42385 1.05902 1.00145 1.89479 1.20655 0.93653 0.85721 0.97517 1.21731 0.98896 0.93839 1.02006 1.21497 0.97853 0.93857 1.01903 1.21519 0.98442 0.92813 1.02669 1.21831 0.98215 0.93972 1.02817 1.21501 0.94987 0.81419 1.02735 1.45954 1.10482 1.05698 1.75365 1.19036 0.87074 0.83696 0.75716 1.90732 1.13679 1.87362 1.49344 1.23365 1.02272 0.92106 1.04085 1.23172 1.02483 0.97828 0.90798 1.24374 1.01272 0.92627 0.99344 0.84914 1.23020 0.95402 0.91126 0.90904 1.89107 1.77334 1.31036 1.31088 1.22730 0.93784 0.92175 0.90313 0.93494 0.78334 0.96592 0.96615 0.92089 0.92082 0.92077 0.92100 0.91610 0.91597 0.91215 0.91207 0.91199 0.91245 0.76436 0.87096 0.87426 0.87951 0.91348 0.91079 0.88220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.93 13.06 55.49 0.72 -28.21 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 22.79 29.55 -169.99 -5.02 17.76 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.74 -19.45 5.60 -59.92 -0.34 -19.79 16 10 C 0.15 3.16 6.26 -4.05 -0.03 3.13 16 11 C -0.13 -2.06 5.33 -26.73 -0.14 -2.21 16 12 C -0.11 -1.37 5.21 -26.73 -0.14 -1.51 16 13 C -0.12 -1.16 5.21 -26.73 -0.14 -1.30 16 14 C -0.13 -1.00 5.33 -26.73 -0.14 -1.15 16 15 C 0.12 1.01 5.67 -4.04 -0.02 0.99 16 16 N -0.72 -5.55 5.45 -60.29 -0.33 -5.88 16 17 C 0.56 5.55 7.42 -10.99 -0.08 5.47 16 18 O -0.53 -7.57 16.85 5.55 0.09 -7.48 16 19 C -0.21 -1.52 2.84 -154.10 -0.44 -1.95 16 20 C -0.11 -0.52 9.89 -26.73 -0.26 -0.79 16 21 C -0.16 -1.02 6.90 -89.05 -0.61 -1.63 16 22 H 0.13 0.97 8.14 -51.93 -0.42 0.55 16 23 C 0.07 0.40 7.45 37.94 0.28 0.69 16 24 O -0.37 -3.05 11.62 -35.23 -0.41 -3.46 16 25 C 0.09 0.53 7.09 37.93 0.27 0.79 16 26 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 27 H 0.38 10.59 7.67 -40.82 -0.31 10.28 16 28 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.40 1.96 8.27 -40.82 -0.34 1.62 16 41 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 45 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 46 H 0.10 0.54 7.88 -51.93 -0.41 0.14 16 LS Contribution 380.06 15.07 5.73 5.73 Total: -1.00 -35.29 380.06 -9.47 -44.76 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -8.22 Total: 3.70 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -1.70 Total: -7.14 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: 0.06 Total: -53.88 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -0.32 Total: -10.94 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.29 -9.47 -44.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178531592.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.888 kcal (2) G-P(sol) polarization free energy of solvation -35.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds