Wall clock time and date at job start Tue Mar 31 2020 03:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47107 * 2 1 4 4 C 1.52999 * 109.47047 * 184.20253 * 3 2 1 5 5 C 1.50703 * 112.84862 * 296.62249 * 4 3 2 6 6 O 1.21288 * 119.99381 * 112.38883 * 5 4 3 7 7 N 1.34769 * 120.00396 * 292.39280 * 5 4 3 8 8 C 1.46504 * 120.00421 * 174.80733 * 7 5 4 9 9 H 1.09004 * 110.77488 * 31.76167 * 8 7 5 10 10 C 1.54321 * 110.71981 * 268.52211 * 8 7 5 11 11 N 1.47024 * 107.27330 * 219.43781 * 10 8 7 12 12 C 1.36936 * 125.64990 * 178.99711 * 11 10 8 13 13 H 1.07998 * 119.99636 * 343.47548 * 12 11 10 14 14 C 1.38811 * 119.99644 * 163.47412 * 12 11 10 15 15 N 1.31619 * 120.00332 * 0.34505 * 14 12 11 16 16 Si 1.86804 * 119.99476 * 180.33950 * 14 12 11 17 17 H 1.48496 * 109.46749 * 94.98972 * 16 14 12 18 18 H 1.48507 * 109.46800 * 214.98678 * 16 14 12 19 19 H 1.48493 * 109.47405 * 334.98483 * 16 14 12 20 20 C 1.47469 * 108.71729 * 358.97930 * 11 10 8 21 21 C 1.54907 * 104.81497 * 24.06384 * 20 11 10 22 22 H 1.09008 * 111.00117 * 81.13731 * 21 20 11 23 23 O 1.42899 * 111.00803 * 204.94622 * 21 20 11 24 24 C 1.53775 * 113.69201 * 67.89379 * 4 3 2 25 25 C 1.53782 * 87.08015 * 89.12506 * 24 4 3 26 26 C 1.53778 * 87.08104 * 25.43447 * 25 24 4 27 27 H 1.09005 * 109.47015 * 60.00345 * 1 2 3 28 28 H 1.09001 * 109.46937 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47298 * 300.00490 * 1 2 3 30 30 H 1.09001 * 109.47617 * 240.00199 * 2 1 3 31 31 H 1.09005 * 109.47015 * 119.99655 * 2 1 3 32 32 H 1.08995 * 109.46744 * 64.20145 * 3 2 1 33 33 H 1.08993 * 109.46791 * 304.20530 * 3 2 1 34 34 H 0.97003 * 120.00057 * 354.80607 * 7 5 4 35 35 H 1.08999 * 109.88438 * 338.86014 * 10 8 7 36 36 H 1.09010 * 109.88106 * 99.86738 * 10 8 7 37 37 H 0.96999 * 119.99619 * 180.02562 * 15 14 12 38 38 H 1.09007 * 110.34660 * 265.24812 * 20 11 10 39 39 H 1.09001 * 110.40392 * 142.91322 * 20 11 10 40 40 H 0.96702 * 113.99802 * 295.42356 * 23 21 20 41 41 H 1.09000 * 113.61868 * 203.67059 * 24 4 3 42 42 H 1.09002 * 113.61792 * 334.58014 * 24 4 3 43 43 H 1.08999 * 113.61676 * 270.88301 * 25 24 4 44 44 H 1.08998 * 113.61196 * 139.97747 * 25 24 4 45 45 H 1.09006 * 113.61733 * 220.01982 * 26 25 24 46 46 H 1.08999 * 113.69378 * 89.12564 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5663 1.4439 -0.1057 5 6 4.2354 0.7919 1.0769 6 8 4.8320 -0.2545 0.9351 7 7 4.1706 1.3714 2.2918 8 6 4.7217 0.6835 3.4620 9 1 5.5785 0.0705 3.1822 10 6 3.6392 -0.1733 4.1517 11 7 3.8341 -0.0379 5.6026 12 6 3.0647 -0.6277 6.5697 13 1 2.0933 -1.0269 6.3179 14 6 3.5334 -0.7126 7.8735 15 7 4.7145 -0.2201 8.1817 16 14 2.4879 -1.5258 9.1907 17 1 2.8867 -2.9494 9.3303 18 1 2.6897 -0.8260 10.4849 19 1 1.0562 -1.4484 8.8042 20 6 4.9955 0.8381 5.8444 21 6 5.1128 1.7027 4.5644 22 1 4.4121 2.5373 4.5912 23 8 6.4516 2.1673 4.3810 24 6 4.0922 0.9465 -1.4625 25 6 4.0046 2.4049 -1.9423 26 6 4.1575 2.8164 -0.4685 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 1.7394 1.9341 0.9252 33 1 1.6164 1.9776 -0.8499 34 1 3.7591 2.2442 2.3916 35 1 2.6487 0.1879 3.8753 36 1 3.7487 -1.2170 3.8564 37 1 5.0421 -0.2798 9.0927 38 1 5.8974 0.2420 5.9835 39 1 4.8198 1.4706 6.7146 40 1 6.7575 2.7691 5.0734 41 1 5.1108 0.5608 -1.4213 42 1 3.4050 0.2754 -1.9777 43 1 3.0370 2.6664 -2.3705 44 1 4.8425 2.7092 -2.5696 45 1 3.5230 3.6548 -0.1810 46 1 5.1936 2.9424 -0.1541 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195491804.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:46 Heat of formation + Delta-G solvation = -78.641246 kcal Electronic energy + Delta-G solvation = -25287.336764 eV Core-core repulsion = 21790.721795 eV Total energy + Delta-G solvation = -3496.614969 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.80611 -40.01838 -38.52986 -36.71317 -35.57802 -35.00513 -33.64413 -30.48328 -29.39149 -28.59725 -26.71356 -26.42875 -25.40297 -22.74675 -22.40506 -22.15168 -21.58288 -19.68966 -18.99777 -18.40627 -17.99093 -17.32526 -16.72586 -16.45321 -16.24510 -15.76205 -15.52771 -15.24752 -15.02169 -14.74977 -14.42776 -14.21379 -13.99079 -13.79583 -13.31464 -13.25326 -13.21938 -13.03747 -12.84942 -12.83184 -12.77259 -12.38981 -12.13355 -12.09953 -11.96146 -11.93993 -11.63767 -11.56301 -11.23012 -11.07530 -11.02041 -10.78546 -10.51795 -10.13434 -8.92946 -7.95110 -5.35992 1.44841 1.47248 1.56166 1.63056 2.10678 2.45005 3.04160 3.25884 3.40877 3.49355 3.59380 3.77633 3.78478 3.91382 4.00169 4.04906 4.17444 4.18584 4.30442 4.38922 4.44923 4.54911 4.74680 4.76651 4.80340 4.82014 4.86489 4.91143 4.94195 5.02638 5.08916 5.13763 5.23477 5.27226 5.28217 5.37986 5.42996 5.46465 5.47082 5.55781 5.58320 6.11530 6.56039 6.83019 6.99825 7.26518 7.63489 8.30589 9.16190 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.018957 B = 0.004128 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.647917 B = 6781.053481 C = 7838.884526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.128 4.128 3 C -0.083 4.083 4 C -0.104 4.104 5 C 0.526 3.474 6 O -0.589 6.589 7 N -0.701 5.701 8 C 0.154 3.846 9 H 0.070 0.930 10 C 0.134 3.866 11 N -0.616 5.616 12 C -0.253 4.253 13 H 0.079 0.921 14 C -0.054 4.054 15 N -0.945 5.945 16 Si 0.981 3.019 17 H -0.289 1.289 18 H -0.288 1.288 19 H -0.265 1.265 20 C 0.159 3.841 21 C 0.091 3.909 22 H 0.091 0.909 23 O -0.568 6.568 24 C -0.122 4.122 25 C -0.123 4.123 26 C -0.122 4.122 27 H 0.074 0.926 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.027 0.973 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.414 0.586 35 H 0.044 0.956 36 H 0.007 0.993 37 H 0.252 0.748 38 H 0.001 0.999 39 H 0.053 0.947 40 H 0.397 0.603 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.101 0.899 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.785 11.129 -18.835 22.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C -0.121 4.121 4 C -0.107 4.107 5 C 0.314 3.686 6 O -0.469 6.469 7 N -0.352 5.352 8 C 0.048 3.952 9 H 0.088 0.912 10 C 0.007 3.993 11 N -0.344 5.344 12 C -0.382 4.382 13 H 0.097 0.903 14 C -0.248 4.248 15 N -0.592 5.592 16 Si 0.808 3.192 17 H -0.216 1.216 18 H -0.214 1.214 19 H -0.190 1.190 20 C 0.032 3.968 21 C 0.031 3.969 22 H 0.109 0.891 23 O -0.376 6.376 24 C -0.160 4.160 25 C -0.160 4.160 26 C -0.159 4.159 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.045 0.955 32 H 0.094 0.906 33 H 0.124 0.876 34 H 0.251 0.749 35 H 0.062 0.938 36 H 0.025 0.975 37 H 0.061 0.939 38 H 0.019 0.981 39 H 0.071 0.929 40 H 0.247 0.753 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.125 0.875 44 H 0.096 0.904 45 H 0.120 0.880 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.402 9.985 -19.256 22.354 hybrid contribution 0.006 -0.529 1.910 1.982 sum -5.397 9.456 -17.346 20.480 Atomic orbital electron populations 1.21724 0.94243 1.01817 1.02572 1.21522 0.97024 0.97121 1.00914 1.21404 0.89180 0.97076 1.04419 1.22339 0.97416 0.99202 0.91736 1.21266 0.78751 0.84128 0.84449 1.90666 1.45000 1.25686 1.85513 1.45762 1.60619 1.22665 1.06121 1.21474 0.95188 0.93599 0.84950 0.91172 1.21663 0.96832 0.96351 0.84441 1.44487 1.33904 1.55784 1.00242 1.19388 0.97824 1.32248 0.88749 0.90291 1.25795 0.97888 1.01071 1.00047 1.70097 1.19700 1.50477 1.18896 0.85045 0.78426 0.77618 0.78114 1.21625 1.21415 1.18979 1.21822 0.89013 0.91372 0.94548 1.23261 0.84344 0.95303 0.94025 0.89120 1.86405 1.29429 1.68601 1.53141 1.22873 1.00988 0.98495 0.93612 1.22809 1.03809 0.93839 0.95568 1.22984 1.01241 0.94448 0.97250 0.90720 0.93223 0.92764 0.91834 0.95450 0.90629 0.87563 0.74902 0.93823 0.97526 0.93894 0.98141 0.92865 0.75288 0.91810 0.90397 0.87505 0.90367 0.88050 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.91 71.98 0.71 -1.79 16 2 C -0.13 -2.71 5.62 30.60 0.17 -2.54 16 3 C -0.08 -1.39 4.58 30.60 0.14 -1.25 16 4 C -0.10 -2.14 0.79 -52.40 -0.04 -2.19 16 5 C 0.53 16.39 5.93 87.66 0.52 16.91 16 6 O -0.59 -24.33 15.82 -3.05 -0.05 -24.38 16 7 N -0.70 -21.03 5.10 -436.92 -2.23 -23.26 16 8 C 0.15 6.02 3.09 46.18 0.14 6.16 16 9 H 0.07 3.22 7.49 -2.38 -0.02 3.20 16 10 C 0.13 6.02 6.99 86.73 0.61 6.63 16 11 N -0.62 -32.39 3.40 -691.86 -2.35 -34.74 16 12 C -0.25 -14.34 10.22 84.03 0.86 -13.48 16 13 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 14 C -0.05 -3.04 5.47 84.86 0.46 -2.57 16 15 N -0.94 -55.93 10.64 21.65 0.23 -55.70 16 16 Si 0.98 45.22 29.55 68.60 2.03 47.24 16 17 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 18 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 19 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 20 C 0.16 7.74 5.12 86.85 0.44 8.19 16 21 C 0.09 3.36 4.05 31.98 0.13 3.49 16 22 H 0.09 2.85 8.01 -2.38 -0.02 2.83 16 23 O -0.57 -19.05 13.47 -148.98 -2.01 -21.06 16 24 C -0.12 -2.43 6.71 31.12 0.21 -2.22 16 25 C -0.12 -1.57 7.73 31.12 0.24 -1.33 16 26 C -0.12 -1.84 7.22 31.12 0.22 -1.61 16 27 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 28 H 0.05 0.88 8.14 -2.39 -0.02 0.87 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 1.34 6.80 -2.39 -0.02 1.32 16 31 H 0.03 0.77 7.65 -2.38 -0.02 0.75 16 32 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.11 1.15 7.31 -2.39 -0.02 1.13 16 34 H 0.41 9.55 8.57 -92.71 -0.79 8.75 16 35 H 0.04 1.83 8.03 -2.39 -0.02 1.82 16 36 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 37 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 38 H 0.00 0.03 8.02 -2.38 -0.02 0.01 16 39 H 0.05 2.78 7.06 -2.39 -0.02 2.77 16 40 H 0.40 9.77 9.12 -74.06 -0.68 9.10 16 41 H 0.06 1.61 7.76 -2.39 -0.02 1.59 16 42 H 0.08 1.45 6.87 -2.39 -0.02 1.43 16 43 H 0.11 0.90 7.60 -2.39 -0.02 0.88 16 44 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.10 1.04 8.10 -2.38 -0.02 1.02 16 46 H 0.07 1.32 8.09 -2.39 -0.02 1.30 16 Total: -1.00 -74.37 364.20 -0.04 -74.41 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: -0.49 Total: 25.06 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 4.83 Total: 12.41 kcal Atomic # 7 Polarization: -109.34 SS G_CDS: -4.35 Total: -113.69 kcal Atomic # 8 Polarization: -43.38 SS G_CDS: -2.06 Total: -45.44 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -74.37 -0.04 -74.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195491804.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.227 kcal (2) G-P(sol) polarization free energy of solvation -74.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds