Wall clock time and date at job start Tue Mar 31 2020 03:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00140 * 3 2 1 5 5 H 1.48499 * 109.47026 * 209.99987 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00023 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08001 * 119.99999 * 359.71854 * 7 2 1 9 9 N 1.36936 * 119.99842 * 179.72505 * 7 2 1 10 10 C 1.46493 * 120.00314 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47400 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47051 * 304.99324 * 11 10 9 13 13 C 1.54812 * 109.47086 * 184.99664 * 11 10 9 14 14 N 1.45121 * 109.53507 * 172.11918 * 13 11 10 15 15 C 1.34778 * 118.76001 * 269.25934 * 14 13 11 16 16 O 1.21287 * 119.99595 * 0.02562 * 15 14 13 17 17 C 1.50693 * 120.00070 * 180.02562 * 15 14 13 18 18 C 1.52999 * 109.47121 * 179.97438 * 17 15 14 19 19 C 1.53773 * 113.61776 * 274.13632 * 18 17 15 20 20 C 1.53956 * 87.02454 * 220.04769 * 19 18 17 21 21 C 1.53782 * 87.10903 * 25.36066 * 20 19 18 22 22 C 1.47513 * 122.48457 * 89.28802 * 14 13 11 23 23 C 1.53569 * 111.02771 * 318.36218 * 22 14 13 24 24 C 1.51528 * 109.58226 * 320.02294 * 23 22 14 25 25 O 1.38014 * 109.47284 * 64.98840 * 11 10 9 26 26 H 0.96999 * 119.99889 * 359.97438 * 1 2 3 27 27 H 0.97000 * 119.99646 * 359.97438 * 9 7 2 28 28 H 1.09004 * 109.46794 * 299.99871 * 10 9 7 29 29 H 1.09000 * 109.47559 * 59.99394 * 10 9 7 30 30 H 1.08995 * 109.45639 * 292.13957 * 13 11 10 31 31 H 1.08996 * 109.45879 * 52.11450 * 13 11 10 32 32 H 1.09003 * 109.47491 * 299.99453 * 17 15 14 33 33 H 1.08998 * 109.47378 * 59.99864 * 17 15 14 34 34 H 1.09006 * 112.84938 * 45.33419 * 18 17 15 35 35 H 1.09004 * 113.61328 * 334.56527 * 19 18 17 36 36 H 1.09001 * 113.61922 * 105.46654 * 19 18 17 37 37 H 1.09000 * 113.53413 * 270.81348 * 20 19 18 38 38 H 1.08999 * 113.67053 * 139.92973 * 20 19 18 39 39 H 1.09001 * 113.61861 * 220.09659 * 21 20 19 40 40 H 1.09001 * 113.61649 * 89.19035 * 21 20 19 41 41 H 1.09008 * 109.16654 * 78.76242 * 22 14 13 42 42 H 1.08999 * 109.16500 * 197.96112 * 22 14 13 43 43 H 1.09000 * 109.45236 * 80.05712 * 23 22 14 44 44 H 1.09000 * 109.44989 * 199.98529 * 23 22 14 45 45 H 1.09002 * 109.59308 * 211.18159 * 24 23 22 46 46 H 1.09005 * 109.59414 * 331.62161 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5478 1.4402 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0058 8 1 1.4701 -2.1375 -0.0058 9 7 3.3795 -1.2022 -0.0115 10 6 4.1120 -2.4709 -0.0183 11 6 5.6162 -2.1914 -0.0244 12 1 5.8619 -1.5433 -0.8656 13 6 6.3886 -3.5263 -0.1586 14 7 7.8007 -3.2526 -0.3516 15 6 8.2702 -3.1228 -1.6083 16 8 7.5163 -3.2343 -2.5518 17 6 9.7317 -2.8390 -1.8410 18 6 9.9990 -2.7400 -3.3442 19 6 10.2692 -4.0982 -4.0127 20 6 11.3564 -3.3855 -4.8374 21 6 11.4508 -2.3676 -3.6886 22 6 8.7417 -3.1118 0.7756 23 6 8.1156 -2.2983 1.9178 24 6 7.3174 -1.1460 1.3423 25 8 5.9734 -1.5696 1.1549 26 1 -0.4850 0.8400 0.0004 27 1 3.8645 -0.3622 -0.0119 28 1 3.8524 -3.0450 0.8712 29 1 3.8450 -3.0400 -0.9087 30 1 6.2536 -4.1166 0.7477 31 1 6.0064 -4.0825 -1.0145 32 1 10.0001 -1.8978 -1.3612 33 1 10.3303 -3.6460 -1.4183 34 1 9.2575 -2.1358 -3.8670 35 1 10.6627 -4.8507 -3.3292 36 1 9.4350 -4.4638 -4.6116 37 1 10.9860 -2.9588 -5.7695 38 1 12.2619 -3.9772 -4.9720 39 1 11.5690 -1.3379 -4.0261 40 1 12.1679 -2.6459 -2.9164 41 1 9.0077 -4.1021 1.1456 42 1 9.6429 -2.6065 0.4285 43 1 7.4564 -2.9405 2.5019 44 1 8.9047 -1.9082 2.5605 45 1 7.3420 -0.3033 2.0333 46 1 7.7437 -0.8484 0.3843 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200189311.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:16 Heat of formation + Delta-G solvation = -43.195267 kcal Electronic energy + Delta-G solvation = -24989.937371 eV Core-core repulsion = 21494.859455 eV Total energy + Delta-G solvation = -3495.077916 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.77403 -39.24543 -38.07740 -35.73256 -34.73896 -32.93195 -31.19276 -31.07610 -28.87177 -26.82773 -25.86091 -25.40948 -23.70622 -22.13493 -21.71935 -21.04340 -19.69514 -19.04309 -17.68436 -17.39014 -16.63937 -16.51845 -16.03362 -15.79183 -15.06815 -14.74698 -14.41039 -14.32296 -14.15945 -13.70673 -13.43396 -13.08439 -12.85836 -12.72180 -12.59074 -12.40434 -12.23310 -12.10887 -11.81231 -11.71466 -11.46455 -11.17661 -10.96339 -10.81980 -10.79884 -10.57047 -10.45064 -10.34390 -10.07021 -9.75669 -9.51747 -9.50982 -8.82617 -8.62107 -7.13751 -5.68875 -3.03084 2.52635 2.82061 3.45403 3.49639 3.51600 3.83729 4.13852 4.35283 4.39471 4.50768 4.57334 4.61213 4.66379 4.68041 4.84478 5.03190 5.07620 5.12698 5.22311 5.28585 5.30097 5.37071 5.41687 5.43068 5.48785 5.52986 5.61379 5.62249 5.66552 5.73850 5.83066 5.84714 5.88769 5.99250 6.00825 6.03686 6.26605 6.45665 6.59847 6.71187 7.18273 7.87153 8.06943 8.09224 8.50309 9.29935 10.02585 10.23497 11.49719 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.018602 B = 0.003658 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.864687 B = 7653.260747 C = 8208.832150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.003 3.997 3 Si 0.887 3.113 4 H -0.284 1.284 5 H -0.279 1.279 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.090 0.910 9 N -0.750 5.750 10 C 0.171 3.829 11 C 0.085 3.915 12 H 0.051 0.949 13 C 0.082 3.918 14 N -0.613 5.613 15 C 0.505 3.495 16 O -0.528 6.528 17 C -0.131 4.131 18 C -0.096 4.096 19 C -0.134 4.134 20 C -0.143 4.143 21 C -0.138 4.138 22 C 0.106 3.894 23 C -0.167 4.167 24 C 0.072 3.928 25 O -0.372 6.372 26 H 0.259 0.741 27 H 0.364 0.636 28 H 0.036 0.964 29 H 0.043 0.957 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.089 0.911 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.596 -7.490 -0.908 29.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.192 4.192 3 Si 0.717 3.283 4 H -0.211 1.211 5 H -0.205 1.205 6 H -0.218 1.218 7 C -0.370 4.370 8 H 0.108 0.892 9 N -0.396 5.396 10 C 0.043 3.957 11 C 0.024 3.976 12 H 0.069 0.931 13 C -0.042 4.042 14 N -0.347 5.347 15 C 0.293 3.707 16 O -0.404 6.404 17 C -0.170 4.170 18 C -0.114 4.114 19 C -0.171 4.171 20 C -0.180 4.180 21 C -0.176 4.176 22 C -0.017 4.017 23 C -0.205 4.205 24 C -0.005 4.005 25 O -0.291 6.291 26 H 0.069 0.931 27 H 0.196 0.804 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.107 0.893 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 27.822 -7.628 -1.269 28.877 hybrid contribution 0.854 1.151 -0.006 1.433 sum 28.676 -6.477 -1.274 29.426 Atomic orbital electron populations 1.69709 1.05064 1.25731 1.57965 1.24645 0.95229 0.97186 1.02181 0.86500 0.79120 0.84917 0.77749 1.21053 1.20493 1.21835 1.19067 0.80556 0.94785 1.42569 0.89170 1.42573 1.03925 1.02088 1.91001 1.20589 0.85647 0.90100 0.99375 1.22334 0.96161 0.92116 0.86943 0.93136 1.22366 0.79622 0.98701 1.03489 1.47994 1.09134 1.71553 1.06049 1.20832 0.90751 0.76565 0.82531 1.90730 1.59152 1.49268 1.41270 1.21756 0.93351 1.03425 0.98516 1.22360 0.96996 0.98664 0.93430 1.22956 0.98796 0.96226 0.99150 1.22825 0.99183 0.98356 0.97637 1.22979 0.96455 0.99533 0.98603 1.21988 0.91950 1.00512 0.87238 1.22501 1.01023 0.99035 0.97976 1.22130 0.82814 0.95640 0.99869 1.86416 1.26964 1.76998 1.38675 0.93144 0.80365 0.94605 0.93916 0.89846 0.88728 0.88947 0.89024 0.88196 0.90527 0.91126 0.90182 0.91590 0.91428 0.90186 0.91459 0.89937 0.89828 0.89669 0.89326 0.93528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.43 13.97 55.49 0.78 -29.65 16 2 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 3 Si 0.89 23.34 27.74 -169.99 -4.72 18.62 16 4 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16 5 H -0.28 -7.03 6.51 56.52 0.37 -6.67 16 6 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 7 C -0.24 -7.15 10.47 -15.06 -0.16 -7.31 16 8 H 0.09 2.83 8.06 -52.49 -0.42 2.41 16 9 N -0.75 -19.29 5.34 -59.91 -0.32 -19.61 16 10 C 0.17 3.56 5.92 -4.05 -0.02 3.54 16 11 C 0.08 1.46 2.68 -25.78 -0.07 1.39 16 12 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 13 C 0.08 1.14 4.87 -3.83 -0.02 1.12 16 14 N -0.61 -7.08 2.19 -172.47 -0.38 -7.46 16 15 C 0.51 6.33 7.63 -10.99 -0.08 6.25 16 16 O -0.53 -8.87 15.22 5.55 0.08 -8.78 16 17 C -0.13 -1.10 3.86 -27.89 -0.11 -1.21 16 18 C -0.10 -0.88 3.11 -89.81 -0.28 -1.16 16 19 C -0.13 -1.18 7.65 -25.83 -0.20 -1.38 16 20 C -0.14 -1.05 8.09 -25.83 -0.21 -1.26 16 21 C -0.14 -0.97 7.65 -25.92 -0.20 -1.17 16 22 C 0.11 0.82 6.00 -3.19 -0.02 0.81 16 23 C -0.17 -1.43 5.78 -27.18 -0.16 -1.59 16 24 C 0.07 0.87 6.37 36.41 0.23 1.10 16 25 O -0.37 -6.26 9.38 -26.53 -0.25 -6.51 16 26 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 27 H 0.36 9.31 5.51 -40.82 -0.22 9.09 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.08 1.04 8.11 -51.93 -0.42 0.62 16 31 H 0.09 1.43 7.27 -51.93 -0.38 1.05 16 32 H 0.09 0.64 7.41 -51.93 -0.38 0.25 16 33 H 0.09 0.59 7.77 -51.93 -0.40 0.18 16 34 H 0.10 1.15 7.73 -51.93 -0.40 0.75 16 35 H 0.08 0.60 7.92 -51.93 -0.41 0.19 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.46 8.10 -51.93 -0.42 0.04 16 41 H 0.07 0.44 8.14 -51.92 -0.42 0.01 16 42 H 0.08 0.46 5.88 -51.93 -0.31 0.16 16 43 H 0.08 0.81 8.01 -51.93 -0.42 0.40 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 46 H 0.05 0.56 7.40 -51.93 -0.38 0.18 16 LS Contribution 359.04 15.07 5.41 5.41 Total: -1.00 -35.56 359.04 -8.75 -44.31 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -7.97 Total: 4.53 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -1.38 Total: -0.87 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: 0.08 Total: -56.72 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.16 Total: -15.29 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -4.72 Total: 18.62 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.56 -8.75 -44.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200189311.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.112 kcal (2) G-P(sol) polarization free energy of solvation -35.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds