Wall clock time and date at job start Tue Mar 31 2020 03:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00140 * 3 2 1 5 5 H 1.48499 * 109.47026 * 209.99987 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00023 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08001 * 119.99999 * 359.71854 * 7 2 1 9 9 N 1.36936 * 119.99842 * 179.72505 * 7 2 1 10 10 C 1.46493 * 120.00314 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47400 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47051 * 304.99324 * 11 10 9 13 13 C 1.54812 * 109.47086 * 184.99664 * 11 10 9 14 14 N 1.45121 * 109.53507 * 172.11918 * 13 11 10 15 15 C 1.34778 * 118.76001 * 269.25934 * 14 13 11 16 16 O 1.21287 * 119.99595 * 0.02562 * 15 14 13 17 17 C 1.50693 * 120.00070 * 180.02562 * 15 14 13 18 18 C 1.52999 * 109.47121 * 179.97438 * 17 15 14 19 19 C 1.53773 * 113.61776 * 274.13632 * 18 17 15 20 20 C 1.53956 * 87.02454 * 220.04769 * 19 18 17 21 21 C 1.53782 * 87.10903 * 25.36066 * 20 19 18 22 22 C 1.47513 * 122.48457 * 89.28802 * 14 13 11 23 23 C 1.53569 * 111.02771 * 318.36218 * 22 14 13 24 24 C 1.51528 * 109.58226 * 320.02294 * 23 22 14 25 25 O 1.38014 * 109.47284 * 64.98840 * 11 10 9 26 26 H 0.96999 * 119.99889 * 359.97438 * 1 2 3 27 27 H 0.97000 * 119.99646 * 359.97438 * 9 7 2 28 28 H 1.09004 * 109.46794 * 299.99871 * 10 9 7 29 29 H 1.09000 * 109.47559 * 59.99394 * 10 9 7 30 30 H 1.08995 * 109.45639 * 292.13957 * 13 11 10 31 31 H 1.08996 * 109.45879 * 52.11450 * 13 11 10 32 32 H 1.09003 * 109.47491 * 299.99453 * 17 15 14 33 33 H 1.08998 * 109.47378 * 59.99864 * 17 15 14 34 34 H 1.09006 * 112.84938 * 45.33419 * 18 17 15 35 35 H 1.09004 * 113.61328 * 334.56527 * 19 18 17 36 36 H 1.09001 * 113.61922 * 105.46654 * 19 18 17 37 37 H 1.09000 * 113.53413 * 270.81348 * 20 19 18 38 38 H 1.08999 * 113.67053 * 139.92973 * 20 19 18 39 39 H 1.09001 * 113.61861 * 220.09659 * 21 20 19 40 40 H 1.09001 * 113.61649 * 89.19035 * 21 20 19 41 41 H 1.09008 * 109.16654 * 78.76242 * 22 14 13 42 42 H 1.08999 * 109.16500 * 197.96112 * 22 14 13 43 43 H 1.09000 * 109.45236 * 80.05712 * 23 22 14 44 44 H 1.09000 * 109.44989 * 199.98529 * 23 22 14 45 45 H 1.09002 * 109.59308 * 211.18159 * 24 23 22 46 46 H 1.09005 * 109.59414 * 331.62161 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5478 1.4402 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0058 8 1 1.4701 -2.1375 -0.0058 9 7 3.3795 -1.2022 -0.0115 10 6 4.1120 -2.4709 -0.0183 11 6 5.6162 -2.1914 -0.0244 12 1 5.8619 -1.5433 -0.8656 13 6 6.3886 -3.5263 -0.1586 14 7 7.8007 -3.2526 -0.3516 15 6 8.2702 -3.1228 -1.6083 16 8 7.5163 -3.2343 -2.5518 17 6 9.7317 -2.8390 -1.8410 18 6 9.9990 -2.7400 -3.3442 19 6 10.2692 -4.0982 -4.0127 20 6 11.3564 -3.3855 -4.8374 21 6 11.4508 -2.3676 -3.6886 22 6 8.7417 -3.1118 0.7756 23 6 8.1156 -2.2983 1.9178 24 6 7.3174 -1.1460 1.3423 25 8 5.9734 -1.5696 1.1549 26 1 -0.4850 0.8400 0.0004 27 1 3.8645 -0.3622 -0.0119 28 1 3.8524 -3.0450 0.8712 29 1 3.8450 -3.0400 -0.9087 30 1 6.2536 -4.1166 0.7477 31 1 6.0064 -4.0825 -1.0145 32 1 10.0001 -1.8978 -1.3612 33 1 10.3303 -3.6460 -1.4183 34 1 9.2575 -2.1358 -3.8670 35 1 10.6627 -4.8507 -3.3292 36 1 9.4350 -4.4638 -4.6116 37 1 10.9860 -2.9588 -5.7695 38 1 12.2619 -3.9772 -4.9720 39 1 11.5690 -1.3379 -4.0261 40 1 12.1679 -2.6459 -2.9164 41 1 9.0077 -4.1021 1.1456 42 1 9.6429 -2.6065 0.4285 43 1 7.4564 -2.9405 2.5019 44 1 8.9047 -1.9082 2.5605 45 1 7.3420 -0.3033 2.0333 46 1 7.7437 -0.8484 0.3843 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200189311.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:16 Heat of formation + Delta-G solvation = -67.123176 kcal Electronic energy + Delta-G solvation = -24990.974963 eV Core-core repulsion = 21494.859455 eV Total energy + Delta-G solvation = -3496.115508 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.74162 -40.15783 -38.98418 -37.02991 -36.29776 -34.38766 -33.03103 -31.93796 -30.20890 -27.88140 -26.72402 -26.44429 -24.87851 -23.64333 -22.79117 -22.36348 -20.34952 -19.90154 -19.83289 -18.34775 -17.76162 -17.60353 -17.02815 -16.70996 -16.39388 -16.15239 -15.61794 -15.27684 -15.15348 -14.95166 -14.87827 -14.53391 -14.07996 -13.87133 -13.73022 -13.51441 -13.27758 -13.22943 -12.87425 -12.84704 -12.58135 -12.38016 -12.33258 -12.13389 -12.03439 -11.85776 -11.55320 -11.43344 -11.23226 -11.05717 -11.05527 -10.73837 -10.59313 -9.64740 -9.35417 -8.06523 -5.39922 1.33231 1.37168 1.44481 1.60274 1.95341 2.44962 2.66629 3.24851 3.41424 3.46544 3.74111 3.77057 3.83129 3.90286 3.96709 4.01617 4.01868 4.09199 4.22937 4.28491 4.40476 4.46591 4.49377 4.56478 4.65078 4.68744 4.77526 4.83295 4.86770 4.88299 4.92561 5.01073 5.04164 5.09939 5.11859 5.17710 5.20182 5.39461 5.54121 5.64018 5.69594 6.17062 6.31416 6.68868 7.02368 7.17317 7.77956 7.98386 9.15046 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.018602 B = 0.003658 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.864687 B = 7653.260747 C = 8208.832150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.062 4.062 3 Si 0.958 3.042 4 H -0.274 1.274 5 H -0.264 1.264 6 H -0.290 1.290 7 C -0.237 4.237 8 H 0.059 0.941 9 N -0.754 5.754 10 C 0.165 3.835 11 C 0.103 3.897 12 H 0.025 0.975 13 C 0.093 3.907 14 N -0.612 5.612 15 C 0.496 3.504 16 O -0.584 6.584 17 C -0.121 4.121 18 C -0.106 4.106 19 C -0.139 4.139 20 C -0.142 4.142 21 C -0.123 4.123 22 C 0.100 3.900 23 C -0.158 4.158 24 C 0.061 3.939 25 O -0.399 6.399 26 H 0.260 0.740 27 H 0.365 0.635 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.117 0.883 33 H 0.124 0.876 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.041 0.959 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.105 0.895 41 H 0.091 0.909 42 H 0.114 0.886 43 H 0.072 0.928 44 H 0.122 0.878 45 H 0.100 0.900 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.126 -7.047 0.626 33.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.254 4.254 3 Si 0.786 3.214 4 H -0.199 1.199 5 H -0.189 1.189 6 H -0.216 1.216 7 C -0.368 4.368 8 H 0.077 0.923 9 N -0.400 5.400 10 C 0.038 3.962 11 C 0.043 3.957 12 H 0.043 0.957 13 C -0.032 4.032 14 N -0.344 5.344 15 C 0.287 3.713 16 O -0.464 6.464 17 C -0.160 4.160 18 C -0.125 4.125 19 C -0.176 4.176 20 C -0.179 4.179 21 C -0.160 4.160 22 C -0.021 4.021 23 C -0.196 4.196 24 C -0.015 4.015 25 O -0.318 6.318 26 H 0.068 0.932 27 H 0.198 0.802 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.119 0.881 31 H 0.094 0.906 32 H 0.135 0.865 33 H 0.142 0.858 34 H 0.083 0.917 35 H 0.111 0.889 36 H 0.060 0.940 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.123 0.877 41 H 0.109 0.891 42 H 0.132 0.868 43 H 0.091 0.909 44 H 0.140 0.860 45 H 0.118 0.882 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 32.424 -7.209 0.298 33.217 hybrid contribution -0.584 0.934 -0.461 1.194 sum 31.840 -6.274 -0.164 32.453 Atomic orbital electron populations 1.69879 1.06943 1.26791 1.59611 1.25486 0.96182 1.01200 1.02494 0.85358 0.78140 0.79690 0.78255 1.19945 1.18910 1.21617 1.19071 0.82434 0.93776 1.41531 0.92255 1.42587 1.02597 1.03880 1.90891 1.20731 0.88285 0.88167 0.98996 1.21890 0.93838 0.93559 0.86451 0.95705 1.22037 0.81221 0.96515 1.03403 1.48129 1.08375 1.70754 1.07183 1.21693 0.92306 0.75318 0.82017 1.90714 1.60861 1.51709 1.43076 1.21820 0.90310 1.05722 0.98131 1.22326 0.97770 0.98432 0.93932 1.23012 0.98493 0.96572 0.99563 1.22827 0.99136 0.98525 0.97444 1.22949 0.94935 0.99481 0.98671 1.22357 0.91760 1.02242 0.85741 1.22440 1.01330 0.97478 0.98373 1.22476 0.80983 0.97623 1.00380 1.86341 1.30232 1.77374 1.37847 0.93155 0.80203 0.94392 0.94446 0.88137 0.90635 0.86494 0.85755 0.91687 0.88945 0.93983 0.91109 0.90023 0.91250 0.87675 0.89084 0.86756 0.90919 0.85990 0.88235 0.93647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.48 13.97 21.65 0.30 -65.18 16 2 C -0.06 -3.88 5.50 84.86 0.47 -3.41 16 3 Si 0.96 48.69 27.74 68.60 1.90 50.59 16 4 H -0.27 -13.39 7.11 99.48 0.71 -12.68 16 5 H -0.26 -12.61 6.51 99.48 0.65 -11.96 16 6 H -0.29 -14.55 7.11 99.48 0.71 -13.85 16 7 C -0.24 -14.59 10.47 84.03 0.88 -13.71 16 8 H 0.06 3.93 8.06 -2.91 -0.02 3.90 16 9 N -0.75 -39.44 5.34 -343.47 -1.83 -41.28 16 10 C 0.16 7.08 5.92 86.38 0.51 7.59 16 11 C 0.10 3.58 2.68 31.21 0.08 3.66 16 12 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 13 C 0.09 2.55 4.87 87.26 0.42 2.97 16 14 N -0.61 -12.81 2.19 -817.95 -1.79 -14.60 16 15 C 0.50 11.82 7.63 87.65 0.67 12.49 16 16 O -0.58 -20.28 15.22 -3.05 -0.05 -20.32 16 17 C -0.12 -1.63 3.86 29.85 0.12 -1.52 16 18 C -0.11 -1.80 3.11 -10.27 -0.03 -1.83 16 19 C -0.14 -2.32 7.65 31.18 0.24 -2.08 16 20 C -0.14 -1.85 8.09 31.18 0.25 -1.60 16 21 C -0.12 -1.36 7.65 31.12 0.24 -1.12 16 22 C 0.10 1.09 6.00 86.38 0.52 1.61 16 23 C -0.16 -2.05 5.78 30.30 0.18 -1.88 16 24 C 0.06 1.31 6.37 71.50 0.46 1.77 16 25 O -0.40 -12.98 9.38 -117.85 -1.11 -14.09 16 26 H 0.26 16.37 8.31 -92.71 -0.77 15.60 16 27 H 0.37 18.66 5.51 -92.71 -0.51 18.15 16 28 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 29 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.10 2.38 8.11 -2.39 -0.02 2.36 16 31 H 0.08 2.36 7.27 -2.39 -0.02 2.34 16 32 H 0.12 1.05 7.41 -2.39 -0.02 1.03 16 33 H 0.12 0.92 7.77 -2.39 -0.02 0.90 16 34 H 0.06 1.56 7.73 -2.38 -0.02 1.54 16 35 H 0.09 1.22 7.92 -2.39 -0.02 1.20 16 36 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.10 0.68 8.10 -2.39 -0.02 0.66 16 41 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 42 H 0.11 0.57 5.88 -2.39 -0.01 0.56 16 43 H 0.07 1.16 8.01 -2.39 -0.02 1.14 16 44 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.05 0.98 7.40 -2.38 -0.02 0.97 16 Total: -1.00 -81.95 359.04 2.81 -79.14 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.38 Total: 22.78 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: 5.00 Total: 2.95 kcal Atomic # 7 Polarization: -117.74 SS G_CDS: -3.32 Total: -121.06 kcal Atomic # 8 Polarization: -33.26 SS G_CDS: -1.15 Total: -34.41 kcal Atomic # 14 Polarization: 48.69 SS G_CDS: 1.90 Total: 50.59 kcal Total: -81.95 2.81 -79.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200189311.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.022 kcal (2) G-P(sol) polarization free energy of solvation -81.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds