Wall clock time and date at job start Tue Mar 31 2020 03:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48494 * 109.47071 * 180.27747 * 3 2 1 5 5 H 1.48506 * 109.47211 * 300.27889 * 3 2 1 6 6 H 1.48493 * 109.47327 * 60.27756 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.46506 * 119.99589 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46684 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47362 * 60.00788 * 11 10 9 13 13 C 1.54807 * 109.46784 * 179.97438 * 11 10 9 14 14 N 1.45118 * 109.54218 * 187.88069 * 13 11 10 15 15 C 1.34775 * 118.75924 * 90.71267 * 14 13 11 16 16 O 1.21279 * 119.99951 * 0.02562 * 15 14 13 17 17 C 1.50704 * 120.00278 * 179.97438 * 15 14 13 18 18 C 1.52992 * 109.47323 * 180.02562 * 17 15 14 19 19 C 1.53780 * 113.61832 * 272.50277 * 18 17 15 20 20 C 1.53781 * 87.08227 * 220.02101 * 19 18 17 21 21 C 1.53774 * 87.08311 * 25.42927 * 20 19 18 22 22 C 1.47507 * 122.48588 * 270.69728 * 14 13 11 23 23 C 1.53570 * 111.02965 * 41.64779 * 22 14 13 24 24 C 1.51538 * 109.58056 * 39.98076 * 23 22 14 25 25 O 1.38014 * 109.47405 * 300.00216 * 11 10 9 26 26 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 27 27 H 0.96999 * 120.00331 * 0.02562 * 9 7 2 28 28 H 1.09000 * 109.47212 * 300.00262 * 10 9 7 29 29 H 1.09001 * 109.46577 * 60.00336 * 10 9 7 30 30 H 1.09005 * 109.45925 * 307.89910 * 13 11 10 31 31 H 1.09004 * 109.46025 * 67.85654 * 13 11 10 32 32 H 1.08995 * 109.47299 * 300.01044 * 17 15 14 33 33 H 1.09008 * 109.46677 * 60.00606 * 17 15 14 34 34 H 1.09004 * 112.84895 * 43.80871 * 18 17 15 35 35 H 1.09009 * 113.61176 * 334.56887 * 19 18 17 36 36 H 1.08998 * 113.62089 * 105.46788 * 19 18 17 37 37 H 1.09000 * 113.60865 * 270.87777 * 20 19 18 38 38 H 1.08999 * 113.61858 * 139.98372 * 20 19 18 39 39 H 1.08998 * 113.61398 * 220.02433 * 21 20 19 40 40 H 1.08998 * 113.68939 * 89.12535 * 21 20 19 41 41 H 1.09001 * 109.17175 * 162.05216 * 22 14 13 42 42 H 1.09002 * 109.16764 * 281.30131 * 22 14 13 43 43 H 1.09007 * 109.45079 * 160.01508 * 23 22 14 44 44 H 1.08999 * 109.45132 * 279.96755 * 23 22 14 45 45 H 1.09007 * 109.58626 * 28.38033 * 24 23 22 46 46 H 1.08996 * 109.58977 * 148.81615 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 -0.0068 5 1 1.8864 2.3994 -1.2091 6 1 1.8966 2.3934 1.2158 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 6 1.0636 -4.8197 -0.0109 12 1 0.4339 -4.7598 -0.8986 13 6 1.8376 -6.1603 -0.0175 14 7 0.9064 -7.2575 -0.2045 15 6 0.6372 -7.6732 -1.4580 16 8 1.1702 -7.1324 -2.4037 17 6 -0.3251 -8.8106 -1.6844 18 6 -0.4511 -9.0810 -3.1850 19 6 -1.5276 -8.2279 -3.8765 20 6 -1.8907 -9.4837 -4.6864 21 6 -1.3187 -10.3059 -3.5195 22 6 0.2435 -7.9353 0.9256 23 6 -0.2168 -6.9213 1.9831 24 6 -0.7764 -5.6912 1.2976 25 8 0.2740 -4.7493 1.1189 26 1 -0.4850 0.8400 0.0040 27 1 0.3555 -2.3880 -0.0021 28 1 2.6812 -3.7126 -0.9040 29 1 2.6880 -3.7165 0.8760 30 1 2.5628 -6.1570 -0.8313 31 1 2.3583 -6.2838 0.9321 32 1 0.0456 -9.7052 -1.1842 33 1 -1.3019 -8.5462 -1.2793 34 1 0.5103 -9.0736 -3.6986 35 1 -2.3202 -7.8969 -3.2053 36 1 -1.1206 -7.4193 -4.4836 37 1 -1.3235 -9.5855 -5.6116 38 1 -2.9631 -9.6161 -4.8296 39 1 -0.7431 -11.1747 -3.8385 40 1 -2.0532 -10.5438 -2.7501 41 1 -0.6223 -8.4845 0.5556 42 1 0.9426 -8.6357 1.3827 43 1 -0.9888 -7.3724 2.6067 44 1 0.6313 -6.6356 2.6053 45 1 -1.1871 -5.9690 0.3267 46 1 -1.5595 -5.2526 1.9160 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200189312.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:18 Heat of formation + Delta-G solvation = -46.686132 kcal Electronic energy + Delta-G solvation = -24976.213742 eV Core-core repulsion = 21480.984451 eV Total energy + Delta-G solvation = -3495.229291 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.67922 -39.14031 -37.98074 -35.60903 -34.53602 -32.85600 -31.09215 -30.81691 -28.54581 -26.65553 -25.78426 -25.22388 -23.70109 -22.35470 -21.65960 -20.88974 -19.61479 -18.97606 -17.38144 -17.08129 -16.55681 -16.34600 -15.98843 -15.55990 -15.00513 -14.80288 -14.43475 -14.19359 -13.97277 -13.59902 -13.10943 -13.03638 -12.97944 -12.64391 -12.56970 -12.29373 -12.13991 -11.91086 -11.69337 -11.54113 -11.32453 -10.95523 -10.82736 -10.76171 -10.72979 -10.49593 -10.38728 -10.21385 -9.96633 -9.71459 -9.60696 -9.35731 -8.79695 -8.50922 -6.80387 -5.65878 -2.93759 2.60137 2.90696 3.50041 3.55044 3.57732 3.99428 4.20662 4.42185 4.47270 4.60067 4.65459 4.68030 4.69463 4.74205 4.96567 5.10855 5.15855 5.26267 5.34671 5.38035 5.39636 5.47188 5.50097 5.52580 5.57443 5.64784 5.67518 5.68480 5.72590 5.87439 5.95159 6.00145 6.03574 6.07833 6.13602 6.33317 6.38153 6.55347 6.70767 6.83165 7.26797 7.78556 8.04820 8.16705 8.52527 9.64056 10.22914 10.59170 11.57174 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.018804 B = 0.003477 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.668120 B = 8050.600235 C = 8778.653133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.235 4.235 8 H 0.071 0.929 9 N -0.725 5.725 10 C 0.166 3.834 11 C 0.090 3.910 12 H 0.050 0.950 13 C 0.081 3.919 14 N -0.613 5.613 15 C 0.505 3.495 16 O -0.530 6.530 17 C -0.131 4.131 18 C -0.095 4.095 19 C -0.135 4.135 20 C -0.142 4.142 21 C -0.138 4.138 22 C 0.106 3.894 23 C -0.167 4.167 24 C 0.074 3.926 25 O -0.368 6.368 26 H 0.253 0.747 27 H 0.387 0.613 28 H 0.034 0.966 29 H 0.026 0.974 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.046 0.954 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.117 -25.039 -0.518 25.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.370 5.370 10 C 0.038 3.962 11 C 0.029 3.971 12 H 0.068 0.932 13 C -0.043 4.043 14 N -0.346 5.346 15 C 0.294 3.706 16 O -0.406 6.406 17 C -0.171 4.171 18 C -0.114 4.114 19 C -0.173 4.173 20 C -0.180 4.180 21 C -0.175 4.175 22 C -0.017 4.017 23 C -0.206 4.206 24 C -0.003 4.003 25 O -0.286 6.286 26 H 0.063 0.937 27 H 0.221 0.779 28 H 0.052 0.948 29 H 0.044 0.956 30 H 0.111 0.889 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.064 0.936 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.641 -24.503 -0.884 24.788 hybrid contribution 0.040 0.628 0.019 0.630 sum -3.601 -23.875 -0.866 24.161 Atomic orbital electron populations 1.69693 1.05092 1.25309 1.58024 1.24737 0.95524 0.97615 1.03281 0.86109 0.78765 0.84201 0.77096 1.20577 1.21950 1.21951 1.19288 0.91027 0.84157 1.42210 0.91151 1.42223 1.06066 0.99486 1.89198 1.20616 0.92400 0.84747 0.98454 1.22257 0.92582 0.94058 0.88158 0.93168 1.22400 0.92537 0.86148 1.03196 1.47986 1.45322 1.35112 1.06208 1.20818 0.82648 0.84647 0.82536 1.90720 1.51553 1.57381 1.40927 1.21758 0.99448 0.97328 0.98527 1.22357 0.99232 0.96407 0.93403 1.22947 0.98084 0.97032 0.99211 1.22790 1.00809 0.96895 0.97495 1.22977 0.99172 0.96792 0.98580 1.21984 0.97282 0.94827 0.87572 1.22518 1.02706 0.96937 0.98407 1.22115 0.89928 0.88952 0.99302 1.86451 1.44765 1.54319 1.43025 0.93704 0.77879 0.94825 0.95628 0.88947 0.90043 0.89013 0.88972 0.88241 0.90388 0.91051 0.90235 0.91569 0.91555 0.90183 0.89968 0.91554 0.89740 0.89945 0.93610 0.89310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.42 13.06 55.49 0.72 -28.70 16 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 3 Si 0.91 23.23 29.55 -169.99 -5.02 18.21 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 6 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 7 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 8 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.73 -19.84 5.49 -59.90 -0.33 -20.17 16 10 C 0.17 3.64 5.95 -4.04 -0.02 3.62 16 11 C 0.09 1.65 2.73 -25.78 -0.07 1.58 16 12 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 13 C 0.08 1.19 4.86 -3.83 -0.02 1.17 16 14 N -0.61 -7.54 2.19 -172.47 -0.38 -7.92 16 15 C 0.51 6.67 7.63 -10.98 -0.08 6.58 16 16 O -0.53 -9.21 15.18 5.56 0.08 -9.12 16 17 C -0.13 -1.18 3.87 -27.89 -0.11 -1.28 16 18 C -0.10 -0.92 3.15 -89.81 -0.28 -1.20 16 19 C -0.14 -1.37 7.63 -25.92 -0.20 -1.56 16 20 C -0.14 -1.16 8.08 -25.92 -0.21 -1.36 16 21 C -0.14 -1.01 7.64 -25.92 -0.20 -1.21 16 22 C 0.11 0.91 6.00 -3.20 -0.02 0.89 16 23 C -0.17 -1.60 5.79 -27.17 -0.16 -1.76 16 24 C 0.07 0.99 6.38 36.42 0.23 1.22 16 25 O -0.37 -6.72 9.19 -26.53 -0.24 -6.96 16 26 H 0.25 7.66 8.31 -40.82 -0.34 7.33 16 27 H 0.39 11.26 7.53 -40.82 -0.31 10.96 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.09 1.46 7.27 -51.93 -0.38 1.08 16 31 H 0.08 1.09 8.11 -51.93 -0.42 0.67 16 32 H 0.09 0.62 8.04 -51.93 -0.42 0.21 16 33 H 0.09 0.70 7.11 -51.92 -0.37 0.33 16 34 H 0.10 1.13 7.67 -51.93 -0.40 0.73 16 35 H 0.08 0.75 7.90 -51.92 -0.41 0.34 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 41 H 0.08 0.52 5.88 -51.93 -0.31 0.22 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.59 8.14 -51.92 -0.42 0.16 16 44 H 0.08 0.89 8.01 -51.93 -0.42 0.47 16 45 H 0.05 0.61 7.40 -51.93 -0.38 0.23 16 46 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 361.78 15.07 5.45 5.45 Total: -1.00 -34.88 361.78 -9.10 -43.98 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -8.00 Total: 6.22 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -1.38 Total: -0.99 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: 0.02 Total: -56.79 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.16 Total: -16.08 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -5.02 Total: 18.21 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.88 -9.10 -43.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200189312.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.708 kcal (2) G-P(sol) polarization free energy of solvation -34.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds