Wall clock time and date at job start Tue Mar 31 2020 03:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48494 * 109.47071 * 180.27747 * 3 2 1 5 5 H 1.48506 * 109.47211 * 300.27889 * 3 2 1 6 6 H 1.48493 * 109.47327 * 60.27756 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.46506 * 119.99589 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46684 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47362 * 60.00788 * 11 10 9 13 13 C 1.54807 * 109.46784 * 179.97438 * 11 10 9 14 14 N 1.45118 * 109.54218 * 187.88069 * 13 11 10 15 15 C 1.34775 * 118.75924 * 90.71267 * 14 13 11 16 16 O 1.21279 * 119.99951 * 0.02562 * 15 14 13 17 17 C 1.50704 * 120.00278 * 179.97438 * 15 14 13 18 18 C 1.52992 * 109.47323 * 180.02562 * 17 15 14 19 19 C 1.53780 * 113.61832 * 272.50277 * 18 17 15 20 20 C 1.53781 * 87.08227 * 220.02101 * 19 18 17 21 21 C 1.53774 * 87.08311 * 25.42927 * 20 19 18 22 22 C 1.47507 * 122.48588 * 270.69728 * 14 13 11 23 23 C 1.53570 * 111.02965 * 41.64779 * 22 14 13 24 24 C 1.51538 * 109.58056 * 39.98076 * 23 22 14 25 25 O 1.38014 * 109.47405 * 300.00216 * 11 10 9 26 26 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 27 27 H 0.96999 * 120.00331 * 0.02562 * 9 7 2 28 28 H 1.09000 * 109.47212 * 300.00262 * 10 9 7 29 29 H 1.09001 * 109.46577 * 60.00336 * 10 9 7 30 30 H 1.09005 * 109.45925 * 307.89910 * 13 11 10 31 31 H 1.09004 * 109.46025 * 67.85654 * 13 11 10 32 32 H 1.08995 * 109.47299 * 300.01044 * 17 15 14 33 33 H 1.09008 * 109.46677 * 60.00606 * 17 15 14 34 34 H 1.09004 * 112.84895 * 43.80871 * 18 17 15 35 35 H 1.09009 * 113.61176 * 334.56887 * 19 18 17 36 36 H 1.08998 * 113.62089 * 105.46788 * 19 18 17 37 37 H 1.09000 * 113.60865 * 270.87777 * 20 19 18 38 38 H 1.08999 * 113.61858 * 139.98372 * 20 19 18 39 39 H 1.08998 * 113.61398 * 220.02433 * 21 20 19 40 40 H 1.08998 * 113.68939 * 89.12535 * 21 20 19 41 41 H 1.09001 * 109.17175 * 162.05216 * 22 14 13 42 42 H 1.09002 * 109.16764 * 281.30131 * 22 14 13 43 43 H 1.09007 * 109.45079 * 160.01508 * 23 22 14 44 44 H 1.08999 * 109.45132 * 279.96755 * 23 22 14 45 45 H 1.09007 * 109.58626 * 28.38033 * 24 23 22 46 46 H 1.08996 * 109.58977 * 148.81615 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 -0.0068 5 1 1.8864 2.3994 -1.2091 6 1 1.8966 2.3934 1.2158 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 6 1.0636 -4.8197 -0.0109 12 1 0.4339 -4.7598 -0.8986 13 6 1.8376 -6.1603 -0.0175 14 7 0.9064 -7.2575 -0.2045 15 6 0.6372 -7.6732 -1.4580 16 8 1.1702 -7.1324 -2.4037 17 6 -0.3251 -8.8106 -1.6844 18 6 -0.4511 -9.0810 -3.1850 19 6 -1.5276 -8.2279 -3.8765 20 6 -1.8907 -9.4837 -4.6864 21 6 -1.3187 -10.3059 -3.5195 22 6 0.2435 -7.9353 0.9256 23 6 -0.2168 -6.9213 1.9831 24 6 -0.7764 -5.6912 1.2976 25 8 0.2740 -4.7493 1.1189 26 1 -0.4850 0.8400 0.0040 27 1 0.3555 -2.3880 -0.0021 28 1 2.6812 -3.7126 -0.9040 29 1 2.6880 -3.7165 0.8760 30 1 2.5628 -6.1570 -0.8313 31 1 2.3583 -6.2838 0.9321 32 1 0.0456 -9.7052 -1.1842 33 1 -1.3019 -8.5462 -1.2793 34 1 0.5103 -9.0736 -3.6986 35 1 -2.3202 -7.8969 -3.2053 36 1 -1.1206 -7.4193 -4.4836 37 1 -1.3235 -9.5855 -5.6116 38 1 -2.9631 -9.6161 -4.8296 39 1 -0.7431 -11.1747 -3.8385 40 1 -2.0532 -10.5438 -2.7501 41 1 -0.6223 -8.4845 0.5556 42 1 0.9426 -8.6357 1.3827 43 1 -0.9888 -7.3724 2.6067 44 1 0.6313 -6.6356 2.6053 45 1 -1.1871 -5.9690 0.3267 46 1 -1.5595 -5.2526 1.9160 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200189312.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:18 Heat of formation + Delta-G solvation = -69.680200 kcal Electronic energy + Delta-G solvation = -24977.210840 eV Core-core repulsion = 21480.984451 eV Total energy + Delta-G solvation = -3496.226389 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.72328 -40.13025 -38.98231 -36.90786 -36.21896 -34.35159 -32.67344 -31.92555 -29.96927 -27.79972 -26.68611 -26.44597 -25.06937 -23.79893 -22.72355 -22.29634 -20.33937 -19.91390 -19.27812 -18.33214 -17.76524 -17.56460 -17.03048 -16.63484 -16.33680 -16.10798 -15.63953 -15.28463 -15.13917 -14.89746 -14.79039 -14.48190 -14.03533 -13.80189 -13.60071 -13.29927 -13.28740 -13.11509 -12.85105 -12.80643 -12.59484 -12.34746 -12.28181 -12.09382 -11.98632 -11.83592 -11.53709 -11.41332 -11.23533 -11.06612 -11.00788 -10.73424 -10.55669 -9.62893 -9.03342 -7.95698 -5.25824 1.45449 1.47898 1.58064 1.60952 1.96990 2.55012 2.71306 3.37535 3.43302 3.63455 3.73541 3.78244 3.85660 3.91725 3.99803 4.01513 4.09033 4.13586 4.28499 4.35616 4.42093 4.47605 4.51444 4.56915 4.68983 4.69072 4.76784 4.85557 4.86761 4.88072 4.92658 5.01426 5.07589 5.09873 5.12863 5.17552 5.21001 5.39515 5.45484 5.54847 5.63902 6.24763 6.32655 6.74405 7.17843 7.30972 8.04766 8.30671 9.28424 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.018804 B = 0.003477 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.668120 B = 8050.600235 C = 8778.653133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.980 3.020 4 H -0.265 1.265 5 H -0.292 1.292 6 H -0.290 1.290 7 C -0.248 4.248 8 H 0.078 0.922 9 N -0.740 5.740 10 C 0.162 3.838 11 C 0.107 3.893 12 H 0.016 0.984 13 C 0.094 3.906 14 N -0.612 5.612 15 C 0.496 3.504 16 O -0.585 6.585 17 C -0.121 4.121 18 C -0.102 4.102 19 C -0.148 4.148 20 C -0.141 4.141 21 C -0.119 4.119 22 C 0.100 3.900 23 C -0.157 4.157 24 C 0.063 3.937 25 O -0.398 6.398 26 H 0.251 0.749 27 H 0.374 0.626 28 H 0.032 0.968 29 H 0.033 0.967 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.127 0.873 33 H 0.115 0.885 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.037 0.963 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.102 0.898 41 H 0.114 0.886 42 H 0.093 0.907 43 H 0.122 0.878 44 H 0.072 0.928 45 H 0.042 0.958 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.465 -27.679 1.031 28.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.809 3.191 4 H -0.189 1.189 5 H -0.219 1.219 6 H -0.217 1.217 7 C -0.380 4.380 8 H 0.095 0.905 9 N -0.382 5.382 10 C 0.035 3.965 11 C 0.047 3.953 12 H 0.034 0.966 13 C -0.031 4.031 14 N -0.344 5.344 15 C 0.286 3.714 16 O -0.464 6.464 17 C -0.160 4.160 18 C -0.121 4.121 19 C -0.185 4.185 20 C -0.178 4.178 21 C -0.156 4.156 22 C -0.020 4.020 23 C -0.195 4.195 24 C -0.012 4.012 25 O -0.317 6.317 26 H 0.060 0.940 27 H 0.205 0.795 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.094 0.906 31 H 0.118 0.882 32 H 0.145 0.855 33 H 0.133 0.867 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.056 0.944 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.121 0.879 41 H 0.132 0.868 42 H 0.112 0.888 43 H 0.140 0.860 44 H 0.090 0.910 45 H 0.061 0.939 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.975 -27.204 0.696 27.501 hybrid contribution 0.112 1.439 -0.455 1.513 sum -3.863 -25.765 0.241 26.054 Atomic orbital electron populations 1.69865 1.06792 1.26034 1.59421 1.25669 0.96509 1.01360 1.03503 0.84974 0.78174 0.79227 0.76765 1.18876 1.21925 1.21667 1.19726 0.91578 0.85263 1.41433 0.90454 1.42421 1.05640 1.00911 1.89276 1.20759 0.93188 0.84236 0.98309 1.21847 0.91780 0.94678 0.87040 0.96575 1.22046 0.92318 0.85255 1.03435 1.48128 1.44789 1.34131 1.07393 1.21704 0.82522 0.85145 0.81979 1.90701 1.53703 1.59342 1.42697 1.21827 0.99220 0.96651 0.98329 1.22330 0.98132 0.97827 0.93784 1.23030 0.98721 0.97010 0.99773 1.22795 1.01617 0.95753 0.97646 1.22925 0.98702 0.95755 0.98264 1.22354 0.98896 0.94602 0.86176 1.22441 1.03241 0.95278 0.98538 1.22431 0.89066 0.89976 0.99766 1.86368 1.46073 1.56855 1.42407 0.93977 0.79464 0.95044 0.94919 0.90561 0.88195 0.85540 0.86722 0.90867 0.89758 0.94409 0.90696 0.90329 0.90531 0.87932 0.86777 0.88839 0.85990 0.90951 0.93940 0.88838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.83 13.06 21.65 0.28 -62.55 16 2 C -0.08 -4.78 5.50 84.86 0.47 -4.31 16 3 Si 0.98 48.37 29.55 68.60 2.03 50.39 16 4 H -0.26 -12.21 7.11 99.48 0.71 -11.51 16 5 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 6 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 7 C -0.25 -14.96 9.99 84.03 0.84 -14.12 16 8 H 0.08 4.44 7.83 -2.91 -0.02 4.41 16 9 N -0.74 -42.01 5.49 -343.44 -1.89 -43.90 16 10 C 0.16 7.39 5.95 86.38 0.51 7.90 16 11 C 0.11 4.09 2.73 31.21 0.09 4.18 16 12 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 13 C 0.09 2.79 4.86 87.25 0.42 3.21 16 14 N -0.61 -14.11 2.19 -817.96 -1.79 -15.90 16 15 C 0.50 12.74 7.63 87.66 0.67 13.41 16 16 O -0.58 -21.28 15.18 -3.03 -0.05 -21.33 16 17 C -0.12 -1.83 3.87 29.85 0.12 -1.72 16 18 C -0.10 -1.85 3.15 -10.27 -0.03 -1.88 16 19 C -0.15 -3.01 7.63 31.12 0.24 -2.77 16 20 C -0.14 -2.11 8.08 31.12 0.25 -1.86 16 21 C -0.12 -1.40 7.64 31.12 0.24 -1.16 16 22 C 0.10 1.31 6.00 86.38 0.52 1.82 16 23 C -0.16 -2.47 5.79 30.31 0.18 -2.30 16 24 C 0.06 1.63 6.38 71.50 0.46 2.08 16 25 O -0.40 -14.78 9.19 -117.85 -1.08 -15.86 16 26 H 0.25 15.58 8.31 -92.71 -0.77 14.81 16 27 H 0.37 22.82 7.53 -92.71 -0.70 22.12 16 28 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.08 2.50 7.27 -2.38 -0.02 2.48 16 31 H 0.10 2.56 8.11 -2.38 -0.02 2.54 16 32 H 0.13 1.09 8.04 -2.39 -0.02 1.07 16 33 H 0.11 1.27 7.11 -2.38 -0.02 1.25 16 34 H 0.07 1.72 7.67 -2.38 -0.02 1.70 16 35 H 0.08 1.56 7.90 -2.38 -0.02 1.54 16 36 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.10 0.79 8.10 -2.39 -0.02 0.77 16 41 H 0.11 0.81 5.88 -2.39 -0.01 0.79 16 42 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.12 1.08 8.14 -2.38 -0.02 1.06 16 44 H 0.07 1.34 8.01 -2.39 -0.02 1.32 16 45 H 0.04 1.10 7.40 -2.38 -0.02 1.08 16 46 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -80.46 361.78 2.72 -77.74 By element: Atomic # 1 Polarization: 28.66 SS G_CDS: 0.25 Total: 28.92 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 4.96 Total: 2.49 kcal Atomic # 7 Polarization: -118.95 SS G_CDS: -3.39 Total: -122.34 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -1.13 Total: -37.19 kcal Atomic # 14 Polarization: 48.37 SS G_CDS: 2.03 Total: 50.39 kcal Total: -80.46 2.72 -77.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200189312.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.057 kcal (2) G-P(sol) polarization free energy of solvation -80.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds