Wall clock time and date at job start Tue Mar 31 2020 03:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 115.54863 * 2 1 4 4 C 1.50694 * 109.47489 * 294.33830 * 3 2 1 5 5 O 1.21276 * 120.00142 * 355.88134 * 4 3 2 6 6 N 1.34778 * 120.00033 * 175.88288 * 4 3 2 7 7 C 1.47508 * 118.75794 * 359.97438 * 6 4 3 8 8 C 1.53573 * 111.02946 * 221.62789 * 7 6 4 9 9 C 1.51538 * 109.58132 * 39.97508 * 8 7 6 10 10 O 1.42149 * 108.76491 * 268.60493 * 9 8 7 11 11 C 1.38015 * 119.44122 * 87.22068 * 10 9 8 12 12 H 1.09000 * 109.46578 * 56.57471 * 11 10 9 13 13 C 1.52995 * 109.47350 * 176.57434 * 11 10 9 14 14 N 1.46501 * 109.46951 * 300.00303 * 13 11 10 15 15 C 1.36938 * 120.00220 * 180.02562 * 14 13 11 16 16 H 1.07997 * 120.00149 * 359.97438 * 15 14 13 17 17 C 1.38814 * 119.99972 * 180.02562 * 15 14 13 18 18 N 1.31612 * 120.00017 * 359.72029 * 17 15 14 19 19 Si 1.86806 * 119.99617 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46703 * 179.72229 * 19 17 15 21 21 H 1.48499 * 109.46823 * 299.72059 * 19 17 15 22 22 H 1.48498 * 109.47403 * 59.72073 * 19 17 15 23 23 C 1.45122 * 118.76099 * 180.02562 * 6 4 3 24 24 C 1.53001 * 117.49668 * 145.67234 * 2 1 3 25 25 C 1.53000 * 117.49475 * 214.33418 * 2 1 3 26 26 H 1.09007 * 109.46898 * 53.64933 * 1 2 3 27 27 H 1.09000 * 109.47020 * 173.65071 * 1 2 3 28 28 H 1.08998 * 109.46952 * 293.65421 * 1 2 3 29 29 H 1.09002 * 109.46907 * 174.33553 * 3 2 1 30 30 H 1.09002 * 109.46892 * 54.34119 * 3 2 1 31 31 H 1.08994 * 109.17035 * 101.22824 * 7 6 4 32 32 H 1.09010 * 109.16877 * 342.02517 * 7 6 4 33 33 H 1.09001 * 109.45128 * 279.94755 * 8 7 6 34 34 H 1.08995 * 109.45416 * 160.00754 * 8 7 6 35 35 H 1.08997 * 109.59114 * 148.81977 * 9 8 7 36 36 H 1.09005 * 109.58563 * 28.38443 * 9 8 7 37 37 H 1.08997 * 109.47300 * 180.02562 * 13 11 10 38 38 H 1.08994 * 109.47449 * 59.99771 * 13 11 10 39 39 H 0.97000 * 120.00338 * 0.02562 * 14 13 11 40 40 H 0.97004 * 120.00260 * 0.27596 * 18 17 15 41 41 H 1.09008 * 109.45311 * 330.68745 * 23 6 4 42 42 H 1.08994 * 109.46098 * 210.73210 * 23 6 4 43 43 H 1.08996 * 117.49790 * 214.99940 * 24 2 1 44 44 H 1.08996 * 117.49891 * 0.02562 * 24 2 1 45 45 H 1.08999 * 117.50382 * 359.97438 * 25 2 1 46 46 H 1.09008 * 117.49529 * 145.00186 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 1.8783 2.0862 -1.2945 5 8 1.2591 1.5116 -2.1647 6 7 2.2878 3.3560 -1.4852 7 6 3.0384 4.0289 -0.4083 8 6 2.5738 5.4827 -0.2380 9 6 1.0669 5.5544 -0.3816 10 8 0.7489 5.8069 -1.7439 11 6 0.6178 4.7467 -2.6177 12 1 -0.1375 4.0569 -2.2411 13 6 0.1927 5.2679 -3.9919 14 7 -1.0903 5.9653 -3.8741 15 6 -1.6726 6.5197 -4.9826 16 1 -1.1858 6.4432 -5.9436 17 6 -2.8880 7.1809 -4.8709 18 7 -3.4834 7.2702 -3.7006 19 14 -3.6818 7.9378 -6.3830 20 1 -4.9674 8.5751 -6.0005 21 1 -2.7735 8.9620 -6.9587 22 1 -3.9355 6.8781 -7.3919 23 6 1.9725 4.0101 -2.7417 24 6 2.2364 -1.1208 0.7653 25 6 2.2364 -1.1207 -0.7655 26 1 -0.3633 0.6092 -0.8277 27 1 -0.3633 -1.0214 -0.1136 28 1 -0.3633 0.4123 0.9413 29 1 3.2693 1.2671 0.1014 30 1 1.8061 1.9665 0.8350 31 1 4.1007 4.0190 -0.6524 32 1 2.8820 3.4913 0.5270 33 1 3.0411 6.1050 -1.0012 34 1 2.8617 5.8425 0.7498 35 1 0.6785 6.3612 0.2399 36 1 0.6249 4.6071 -0.0727 37 1 0.0887 4.4305 -4.6818 38 1 0.9479 5.9577 -4.3684 39 1 -1.5274 6.0343 -3.0109 40 1 -3.0710 6.8775 -2.9153 41 1 1.9079 3.2635 -3.5334 42 1 2.7556 4.7286 -2.9835 43 1 3.1713 -0.8748 1.2688 44 1 1.6112 -1.8583 1.2685 45 1 1.6112 -1.8582 -1.2687 46 1 3.1714 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200991766.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:37 Heat of formation + Delta-G solvation = -38.644621 kcal Electronic energy + Delta-G solvation = -25184.179747 eV Core-core repulsion = 21689.299162 eV Total energy + Delta-G solvation = -3494.880585 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.74001 -38.98726 -37.54975 -35.69190 -34.74806 -33.01690 -30.89454 -30.44611 -28.72712 -27.82218 -26.56644 -24.71579 -22.78644 -22.61125 -21.80140 -21.05565 -19.97439 -18.57983 -17.44201 -17.21248 -16.59346 -16.38658 -16.09478 -15.47083 -15.26836 -14.57989 -14.38910 -14.05697 -13.84671 -13.65052 -13.53195 -13.09740 -12.97941 -12.68356 -12.63529 -12.33723 -12.22908 -11.95468 -11.71576 -11.64617 -11.45363 -11.32280 -11.02572 -10.65229 -10.49157 -10.48190 -10.29710 -10.07231 -9.91687 -9.55697 -9.44935 -9.11533 -8.79642 -8.55995 -6.88491 -6.00264 -2.98130 2.55094 2.80939 3.56293 3.57754 3.62252 3.79320 3.90436 4.33714 4.36837 4.54901 4.57270 4.66110 4.74735 4.76417 4.85381 4.90728 5.15275 5.19424 5.24950 5.31323 5.33727 5.40516 5.42099 5.47061 5.57194 5.67555 5.71086 5.72847 5.77246 5.78895 5.89591 5.92104 5.94497 5.95669 6.05099 6.17792 6.23329 6.49258 6.62602 6.74528 7.21336 7.88646 7.95739 8.12883 8.87099 9.34982 10.21550 10.37726 11.48808 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.019948 B = 0.003585 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.347628 B = 7807.429642 C = 8503.502178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.109 4.109 3 C -0.103 4.103 4 C 0.506 3.494 5 O -0.522 6.522 6 N -0.613 5.613 7 C 0.105 3.895 8 C -0.167 4.167 9 C 0.073 3.927 10 O -0.370 6.370 11 C 0.088 3.912 12 H 0.049 0.951 13 C 0.172 3.828 14 N -0.737 5.737 15 C -0.329 4.329 16 H 0.064 0.936 17 C -0.047 4.047 18 N -0.945 5.945 19 Si 1.081 2.919 20 H -0.285 1.285 21 H -0.296 1.296 22 H -0.296 1.296 23 C 0.082 3.918 24 C -0.178 4.178 25 C -0.161 4.161 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.046 0.954 37 H 0.035 0.965 38 H 0.026 0.974 39 H 0.370 0.630 40 H 0.255 0.745 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.147 -12.741 13.004 25.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.109 4.109 3 C -0.143 4.143 4 C 0.294 3.706 5 O -0.397 6.397 6 N -0.347 5.347 7 C -0.017 4.017 8 C -0.205 4.205 9 C -0.003 4.003 10 O -0.288 6.288 11 C 0.028 3.972 12 H 0.067 0.933 13 C 0.044 3.956 14 N -0.382 5.382 15 C -0.460 4.460 16 H 0.082 0.918 17 C -0.244 4.244 18 N -0.591 5.591 19 Si 0.912 3.088 20 H -0.211 1.211 21 H -0.223 1.223 22 H -0.223 1.223 23 C -0.041 4.041 24 C -0.215 4.215 25 C -0.198 4.198 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.110 0.890 30 H 0.113 0.887 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.044 0.956 39 H 0.204 0.796 40 H 0.066 0.934 41 H 0.111 0.889 42 H 0.100 0.900 43 H 0.110 0.890 44 H 0.113 0.887 45 H 0.113 0.887 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 15.590 -12.028 11.684 22.896 hybrid contribution 1.553 -1.076 1.006 2.141 sum 17.142 -13.104 12.691 25.033 Atomic orbital electron populations 1.21351 0.91525 1.02290 1.02265 1.21046 0.95263 0.89197 1.05389 1.21260 1.01702 0.95176 0.96178 1.20710 0.79103 0.81367 0.89389 1.90719 1.38925 1.65392 1.44658 1.47987 1.56333 1.13310 1.17094 1.21999 0.95569 0.94029 0.90151 1.22508 0.98566 0.95928 1.03533 1.22118 0.93233 1.01141 0.83851 1.86429 1.89915 1.34426 1.18032 1.22259 0.94374 0.88541 0.91991 0.93273 1.20545 0.89314 0.95223 0.90541 1.42204 1.20639 1.66839 1.08554 1.20040 1.05128 1.32208 0.88666 0.91823 1.25767 0.94886 1.00109 1.03650 1.70848 1.40881 1.48292 0.99045 0.83231 0.76092 0.75819 0.73641 1.21077 1.22329 1.22310 1.22346 0.98258 0.97591 0.85925 1.23123 1.02170 1.01284 0.94919 1.22954 1.02213 1.01137 0.93540 0.90760 0.92553 0.92700 0.88991 0.88672 0.91510 0.89941 0.89935 0.89656 0.89290 0.93557 0.94742 0.95572 0.79634 0.93362 0.88896 0.90015 0.88967 0.88692 0.88715 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 9.52 37.16 0.35 -0.95 16 2 C -0.11 -1.09 1.59 -154.51 -0.25 -1.33 16 3 C -0.10 -0.95 4.01 -27.89 -0.11 -1.06 16 4 C 0.51 6.59 7.42 -10.99 -0.08 6.51 16 5 O -0.52 -8.84 13.97 5.56 0.08 -8.76 16 6 N -0.61 -7.44 2.19 -172.54 -0.38 -7.82 16 7 C 0.11 0.89 6.04 -3.19 -0.02 0.87 16 8 C -0.17 -1.58 5.79 -27.17 -0.16 -1.73 16 9 C 0.07 0.96 6.37 36.42 0.23 1.19 16 10 O -0.37 -6.68 9.18 -26.54 -0.24 -6.92 16 11 C 0.09 1.62 2.73 -25.84 -0.07 1.55 16 12 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 13 C 0.17 3.81 5.95 -4.04 -0.02 3.78 16 14 N -0.74 -20.17 5.49 -59.91 -0.33 -20.50 16 15 C -0.33 -9.87 9.99 -15.06 -0.15 -10.02 16 16 H 0.06 1.86 7.83 -52.49 -0.41 1.45 16 17 C -0.05 -1.43 5.50 -17.43 -0.10 -1.52 16 18 N -0.94 -30.56 13.70 55.49 0.76 -29.80 16 19 Si 1.08 26.97 29.92 -169.99 -5.09 21.88 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.30 -7.03 7.11 56.52 0.40 -6.62 16 22 H -0.30 -7.04 7.11 56.52 0.40 -6.63 16 23 C 0.08 1.21 4.86 -3.89 -0.02 1.19 16 24 C -0.18 -1.40 9.94 -26.69 -0.27 -1.67 16 25 C -0.16 -1.57 9.84 -26.69 -0.26 -1.84 16 26 H 0.07 1.04 6.59 -51.93 -0.34 0.70 16 27 H 0.06 0.57 8.08 -51.93 -0.42 0.16 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.09 0.66 8.09 -51.93 -0.42 0.24 16 30 H 0.10 0.73 7.18 -51.93 -0.37 0.36 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.52 5.79 -51.92 -0.30 0.22 16 33 H 0.08 0.88 8.01 -51.93 -0.42 0.46 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.05 0.60 7.40 -51.93 -0.38 0.22 16 37 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.37 10.49 6.36 -40.82 -0.26 10.23 16 40 H 0.26 8.21 6.77 -40.82 -0.28 7.93 16 41 H 0.09 1.46 7.27 -51.92 -0.38 1.08 16 42 H 0.08 1.10 8.11 -51.93 -0.42 0.68 16 43 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.09 0.87 8.14 -51.92 -0.42 0.44 16 LS Contribution 362.38 15.07 5.46 5.46 Total: -1.00 -35.81 362.38 -8.50 -44.31 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -7.85 Total: 7.18 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -0.92 Total: -5.04 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: 0.05 Total: -58.12 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.17 Total: -15.68 kcal Atomic # 14 Polarization: 26.97 SS G_CDS: -5.09 Total: 21.88 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.81 -8.50 -44.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200991766.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.669 kcal (2) G-P(sol) polarization free energy of solvation -35.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds