Wall clock time and date at job start Tue Mar 31 2020 03:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 115.54863 * 2 1 4 4 C 1.50694 * 109.47489 * 294.33830 * 3 2 1 5 5 O 1.21276 * 120.00142 * 355.88134 * 4 3 2 6 6 N 1.34778 * 120.00033 * 175.88288 * 4 3 2 7 7 C 1.47508 * 118.75794 * 359.97438 * 6 4 3 8 8 C 1.53573 * 111.02946 * 221.62789 * 7 6 4 9 9 C 1.51538 * 109.58132 * 39.97508 * 8 7 6 10 10 O 1.42149 * 108.76491 * 268.60493 * 9 8 7 11 11 C 1.38015 * 119.44122 * 87.22068 * 10 9 8 12 12 H 1.09000 * 109.46578 * 56.57471 * 11 10 9 13 13 C 1.52995 * 109.47350 * 176.57434 * 11 10 9 14 14 N 1.46501 * 109.46951 * 300.00303 * 13 11 10 15 15 C 1.36938 * 120.00220 * 180.02562 * 14 13 11 16 16 H 1.07997 * 120.00149 * 359.97438 * 15 14 13 17 17 C 1.38814 * 119.99972 * 180.02562 * 15 14 13 18 18 N 1.31612 * 120.00017 * 359.72029 * 17 15 14 19 19 Si 1.86806 * 119.99617 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46703 * 179.72229 * 19 17 15 21 21 H 1.48499 * 109.46823 * 299.72059 * 19 17 15 22 22 H 1.48498 * 109.47403 * 59.72073 * 19 17 15 23 23 C 1.45122 * 118.76099 * 180.02562 * 6 4 3 24 24 C 1.53001 * 117.49668 * 145.67234 * 2 1 3 25 25 C 1.53000 * 117.49475 * 214.33418 * 2 1 3 26 26 H 1.09007 * 109.46898 * 53.64933 * 1 2 3 27 27 H 1.09000 * 109.47020 * 173.65071 * 1 2 3 28 28 H 1.08998 * 109.46952 * 293.65421 * 1 2 3 29 29 H 1.09002 * 109.46907 * 174.33553 * 3 2 1 30 30 H 1.09002 * 109.46892 * 54.34119 * 3 2 1 31 31 H 1.08994 * 109.17035 * 101.22824 * 7 6 4 32 32 H 1.09010 * 109.16877 * 342.02517 * 7 6 4 33 33 H 1.09001 * 109.45128 * 279.94755 * 8 7 6 34 34 H 1.08995 * 109.45416 * 160.00754 * 8 7 6 35 35 H 1.08997 * 109.59114 * 148.81977 * 9 8 7 36 36 H 1.09005 * 109.58563 * 28.38443 * 9 8 7 37 37 H 1.08997 * 109.47300 * 180.02562 * 13 11 10 38 38 H 1.08994 * 109.47449 * 59.99771 * 13 11 10 39 39 H 0.97000 * 120.00338 * 0.02562 * 14 13 11 40 40 H 0.97004 * 120.00260 * 0.27596 * 18 17 15 41 41 H 1.09008 * 109.45311 * 330.68745 * 23 6 4 42 42 H 1.08994 * 109.46098 * 210.73210 * 23 6 4 43 43 H 1.08996 * 117.49790 * 214.99940 * 24 2 1 44 44 H 1.08996 * 117.49891 * 0.02562 * 24 2 1 45 45 H 1.08999 * 117.50382 * 359.97438 * 25 2 1 46 46 H 1.09008 * 117.49529 * 145.00186 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 1.8783 2.0862 -1.2945 5 8 1.2591 1.5116 -2.1647 6 7 2.2878 3.3560 -1.4852 7 6 3.0384 4.0289 -0.4083 8 6 2.5738 5.4827 -0.2380 9 6 1.0669 5.5544 -0.3816 10 8 0.7489 5.8069 -1.7439 11 6 0.6178 4.7467 -2.6177 12 1 -0.1375 4.0569 -2.2411 13 6 0.1927 5.2679 -3.9919 14 7 -1.0903 5.9653 -3.8741 15 6 -1.6726 6.5197 -4.9826 16 1 -1.1858 6.4432 -5.9436 17 6 -2.8880 7.1809 -4.8709 18 7 -3.4834 7.2702 -3.7006 19 14 -3.6818 7.9378 -6.3830 20 1 -4.9674 8.5751 -6.0005 21 1 -2.7735 8.9620 -6.9587 22 1 -3.9355 6.8781 -7.3919 23 6 1.9725 4.0101 -2.7417 24 6 2.2364 -1.1208 0.7653 25 6 2.2364 -1.1207 -0.7655 26 1 -0.3633 0.6092 -0.8277 27 1 -0.3633 -1.0214 -0.1136 28 1 -0.3633 0.4123 0.9413 29 1 3.2693 1.2671 0.1014 30 1 1.8061 1.9665 0.8350 31 1 4.1007 4.0190 -0.6524 32 1 2.8820 3.4913 0.5270 33 1 3.0411 6.1050 -1.0012 34 1 2.8617 5.8425 0.7498 35 1 0.6785 6.3612 0.2399 36 1 0.6249 4.6071 -0.0727 37 1 0.0887 4.4305 -4.6818 38 1 0.9479 5.9577 -4.3684 39 1 -1.5274 6.0343 -3.0109 40 1 -3.0710 6.8775 -2.9153 41 1 1.9079 3.2635 -3.5334 42 1 2.7556 4.7286 -2.9835 43 1 3.1713 -0.8748 1.2688 44 1 1.6112 -1.8583 1.2685 45 1 1.6112 -1.8582 -1.2687 46 1 3.1714 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200991766.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:37 Heat of formation + Delta-G solvation = -62.360009 kcal Electronic energy + Delta-G solvation = -25185.208123 eV Core-core repulsion = 21689.299162 eV Total energy + Delta-G solvation = -3495.908962 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.78019 -40.08827 -38.44529 -37.11304 -36.36231 -34.48906 -32.59676 -31.45117 -29.86721 -28.98593 -27.57181 -26.37804 -24.69242 -23.30574 -22.97858 -22.37561 -20.87512 -19.47243 -19.39468 -18.39905 -17.84330 -17.61759 -17.25788 -16.55307 -16.37763 -15.85133 -15.69923 -15.37527 -15.17658 -14.99543 -14.81365 -14.59714 -14.09763 -13.93360 -13.60273 -13.47989 -13.16258 -13.03068 -12.81888 -12.69165 -12.59798 -12.40185 -12.33720 -12.18372 -12.05630 -11.88155 -11.60220 -11.33034 -11.25172 -10.99337 -10.89169 -10.63819 -10.42991 -9.66934 -9.16015 -8.44187 -5.37035 1.56291 1.58576 1.68165 1.84535 1.89404 2.62167 2.70076 2.85030 3.37576 3.50820 3.56938 3.66153 3.80289 3.83636 3.91762 3.99036 4.01169 4.04515 4.16079 4.22711 4.23905 4.40206 4.44831 4.52978 4.56867 4.61819 4.70399 4.75756 4.79392 4.81729 4.90299 4.94269 4.98130 5.04364 5.06090 5.12706 5.16094 5.26605 5.33702 5.50211 5.52865 6.28966 6.44575 6.65512 7.04870 7.16540 7.94924 8.07935 9.07581 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.019948 B = 0.003585 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.347628 B = 7807.429642 C = 8503.502178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.128 4.128 3 C -0.095 4.095 4 C 0.498 3.502 5 O -0.572 6.572 6 N -0.613 5.613 7 C 0.100 3.900 8 C -0.157 4.157 9 C 0.063 3.937 10 O -0.400 6.400 11 C 0.107 3.893 12 H 0.017 0.983 13 C 0.168 3.832 14 N -0.751 5.751 15 C -0.340 4.340 16 H 0.068 0.932 17 C -0.106 4.106 18 N -0.972 5.972 19 Si 1.133 2.867 20 H -0.290 1.290 21 H -0.275 1.275 22 H -0.277 1.277 23 C 0.097 3.903 24 C -0.147 4.147 25 C -0.179 4.179 26 H 0.035 0.965 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.124 0.876 30 H 0.118 0.882 31 H 0.093 0.907 32 H 0.114 0.886 33 H 0.071 0.929 34 H 0.123 0.877 35 H 0.095 0.905 36 H 0.043 0.957 37 H 0.030 0.970 38 H 0.031 0.969 39 H 0.361 0.639 40 H 0.241 0.759 41 H 0.076 0.924 42 H 0.099 0.901 43 H 0.117 0.883 44 H 0.102 0.898 45 H 0.081 0.919 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.701 -12.898 14.629 27.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.128 4.128 3 C -0.134 4.134 4 C 0.288 3.712 5 O -0.451 6.451 6 N -0.346 5.346 7 C -0.021 4.021 8 C -0.195 4.195 9 C -0.013 4.013 10 O -0.319 6.319 11 C 0.047 3.953 12 H 0.035 0.965 13 C 0.041 3.959 14 N -0.396 5.396 15 C -0.471 4.471 16 H 0.086 0.914 17 C -0.296 4.296 18 N -0.620 5.620 19 Si 0.957 3.043 20 H -0.216 1.216 21 H -0.200 1.200 22 H -0.203 1.203 23 C -0.028 4.028 24 C -0.183 4.183 25 C -0.217 4.217 26 H 0.054 0.946 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.142 0.858 30 H 0.136 0.864 31 H 0.111 0.889 32 H 0.132 0.868 33 H 0.090 0.910 34 H 0.141 0.859 35 H 0.113 0.887 36 H 0.062 0.938 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.192 0.808 40 H 0.051 0.949 41 H 0.095 0.905 42 H 0.117 0.883 43 H 0.135 0.865 44 H 0.120 0.880 45 H 0.100 0.900 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 18.219 -12.200 13.343 25.667 hybrid contribution 0.770 -1.049 0.549 1.413 sum 18.989 -13.249 13.892 27.002 Atomic orbital electron populations 1.21299 0.93155 1.01665 1.01217 1.21110 0.94346 0.90310 1.07058 1.21323 1.03620 0.94302 0.94146 1.21539 0.77972 0.81424 0.90247 1.90704 1.41128 1.66649 1.46631 1.48115 1.56222 1.13266 1.16967 1.22358 0.96315 0.93272 0.90141 1.22436 0.95030 0.96740 1.05294 1.22438 0.96364 1.01273 0.81183 1.86346 1.90581 1.34683 1.20318 1.21829 0.95644 0.87901 0.89963 0.96461 1.20679 0.87295 0.94524 0.93404 1.42414 1.22318 1.67267 1.07561 1.20452 1.05424 1.31715 0.89559 0.91384 1.27405 0.95860 1.00714 1.05658 1.70975 1.41579 1.49878 0.99537 0.82584 0.75204 0.75893 0.70641 1.21570 1.20040 1.20302 1.21977 0.96387 0.97148 0.87307 1.23196 1.02551 0.99290 0.93304 1.22973 1.02108 1.01225 0.95353 0.94607 0.92381 0.91503 0.85785 0.86442 0.88870 0.86800 0.91013 0.85928 0.88732 0.93814 0.95183 0.95157 0.80756 0.94877 0.90542 0.88324 0.86480 0.88000 0.90006 0.89162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 9.52 71.98 0.69 -1.92 16 2 C -0.13 -2.35 1.59 -52.18 -0.08 -2.43 16 3 C -0.09 -1.46 4.01 29.85 0.12 -1.34 16 4 C 0.50 12.55 7.42 87.66 0.65 13.20 16 5 O -0.57 -20.20 13.97 -3.02 -0.04 -20.24 16 6 N -0.61 -13.94 2.19 -818.18 -1.79 -15.73 16 7 C 0.10 1.29 6.04 86.38 0.52 1.81 16 8 C -0.16 -2.45 5.79 30.31 0.18 -2.28 16 9 C 0.06 1.59 6.37 71.50 0.46 2.05 16 10 O -0.40 -14.72 9.18 -117.87 -1.08 -15.80 16 11 C 0.11 4.07 2.73 31.17 0.09 4.16 16 12 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 13 C 0.17 7.75 5.95 86.38 0.51 8.26 16 14 N -0.75 -42.78 5.49 -343.47 -1.88 -44.67 16 15 C -0.34 -20.83 9.99 84.03 0.84 -19.99 16 16 H 0.07 4.02 7.83 -2.91 -0.02 3.99 16 17 C -0.11 -6.53 5.50 84.86 0.47 -6.06 16 18 N -0.97 -64.51 13.70 21.65 0.30 -64.21 16 19 Si 1.13 54.47 29.92 68.60 2.05 56.52 16 20 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 C 0.10 2.85 4.86 87.22 0.42 3.27 16 24 C -0.15 -1.85 9.94 30.62 0.30 -1.55 16 25 C -0.18 -3.31 9.84 30.62 0.30 -3.01 16 26 H 0.03 1.07 6.59 -2.38 -0.02 1.05 16 27 H 0.06 1.22 8.08 -2.39 -0.02 1.20 16 28 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.12 1.16 8.09 -2.39 -0.02 1.14 16 30 H 0.12 1.31 7.18 -2.39 -0.02 1.29 16 31 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.11 0.80 5.79 -2.38 -0.01 0.79 16 33 H 0.07 1.33 8.01 -2.39 -0.02 1.31 16 34 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.04 1.11 7.40 -2.38 -0.02 1.10 16 37 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.36 21.54 6.36 -92.71 -0.59 20.95 16 40 H 0.24 16.18 6.77 -92.71 -0.63 15.55 16 41 H 0.08 2.50 7.27 -2.38 -0.02 2.48 16 42 H 0.10 2.55 8.11 -2.39 -0.02 2.53 16 43 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 Total: -1.00 -82.44 362.38 3.51 -78.92 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: 0.51 Total: 31.05 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: 5.46 Total: -5.84 kcal Atomic # 7 Polarization: -121.23 SS G_CDS: -3.38 Total: -124.61 kcal Atomic # 8 Polarization: -34.92 SS G_CDS: -1.12 Total: -36.04 kcal Atomic # 14 Polarization: 54.47 SS G_CDS: 2.05 Total: 56.52 kcal Total: -82.44 3.51 -78.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200991766.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.563 kcal (2) G-P(sol) polarization free energy of solvation -82.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds