Wall clock time and date at job start Tue Mar 31 2020 03:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00168 * 2 1 4 4 H 1.48506 * 109.47207 * 269.99766 * 3 2 1 5 5 H 1.48500 * 109.47309 * 30.00017 * 3 2 1 6 6 H 1.48504 * 109.47538 * 149.99884 * 3 2 1 7 7 C 1.37879 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00423 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99911 * 180.02562 * 7 2 1 10 10 N 1.46902 * 109.47253 * 179.97438 * 9 7 2 11 11 C 1.47955 * 110.99696 * 169.99594 * 10 9 7 12 12 C 1.53938 * 86.18093 * 222.41730 * 11 10 9 13 13 O 1.42898 * 113.73693 * 138.08141 * 12 11 10 14 14 C 1.42899 * 114.00175 * 149.99974 * 13 12 11 15 15 C 1.53005 * 109.46801 * 180.02562 * 14 13 12 16 16 H 1.08996 * 109.86924 * 305.44960 * 15 14 13 17 17 C 1.56088 * 109.81786 * 184.47599 * 15 14 13 18 18 C 1.55539 * 103.12025 * 239.84185 * 17 15 14 19 19 H 1.08999 * 112.61749 * 216.83375 * 18 17 15 20 20 C 1.53104 * 106.81444 * 93.08799 * 18 17 15 21 21 C 1.52736 * 110.44987 * 198.48679 * 20 18 17 22 22 N 1.47105 * 108.67757 * 61.14717 * 21 20 18 23 23 C 1.46919 * 109.30147 * 293.85043 * 22 21 20 24 24 C 1.51293 * 110.74741 * 62.55948 * 23 22 21 25 25 H 1.09006 * 108.84737 * 184.98543 * 24 23 22 26 26 O 1.43486 * 112.54277 * 63.71849 * 24 23 22 27 27 C 1.47960 * 110.99885 * 70.63761 * 10 9 7 28 28 H 0.97003 * 120.00303 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.47080 * 59.99673 * 9 7 2 30 30 H 1.09004 * 109.46896 * 299.99970 * 9 7 2 31 31 H 1.09005 * 113.75723 * 108.10216 * 11 10 9 32 32 H 1.08998 * 113.76386 * 336.73409 * 11 10 9 33 33 H 1.09005 * 113.73651 * 269.26422 * 12 11 10 34 34 H 1.08998 * 109.46690 * 60.00222 * 14 13 12 35 35 H 1.08991 * 109.47181 * 300.00295 * 14 13 12 36 36 H 1.08999 * 110.79198 * 121.58018 * 17 15 14 37 37 H 1.08996 * 111.08853 * 358.25190 * 17 15 14 38 38 H 1.09001 * 109.30569 * 78.18752 * 20 18 17 39 39 H 1.08999 * 109.14715 * 318.68582 * 20 18 17 40 40 H 1.09000 * 109.60240 * 180.90879 * 21 20 18 41 41 H 1.09002 * 109.60066 * 301.38600 * 21 20 18 42 42 H 1.00899 * 111.00008 * 58.24387 * 22 21 20 43 43 H 1.08998 * 110.33861 * 301.64799 * 23 22 21 44 44 H 1.09001 * 108.41323 * 182.23459 * 23 22 21 45 45 H 1.08999 * 113.75992 * 23.26200 * 27 10 9 46 46 H 1.08998 * 113.75863 * 251.90469 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0011 10 7 4.0011 -2.5792 0.0022 11 6 5.4604 -2.6257 -0.2371 12 6 5.1656 -3.8146 -1.1695 13 8 5.9124 -3.7894 -2.3876 14 6 6.1969 -5.0838 -2.9219 15 6 6.9964 -4.9360 -4.2181 16 1 6.4626 -4.2850 -4.9104 17 6 7.2139 -6.3381 -4.8685 18 6 8.7631 -6.4695 -4.9144 19 1 9.1142 -6.9774 -5.8126 20 6 9.1841 -7.1957 -3.6339 21 6 10.6703 -6.9753 -3.3595 22 7 10.9072 -5.5350 -3.1772 23 6 10.6516 -4.8366 -4.4443 24 6 9.2055 -4.9936 -4.8605 25 1 9.0709 -4.5417 -5.8433 26 8 8.2966 -4.3855 -3.9315 27 6 3.7466 -3.2326 -1.3006 28 1 -0.4851 0.8400 -0.0004 29 1 3.8744 -0.6801 0.8911 30 1 3.8751 -0.6805 -0.8889 31 1 6.0419 -2.8933 0.6452 32 1 5.8490 -1.7482 -0.7539 33 1 5.1999 -4.7829 -0.6701 34 1 5.2621 -5.6049 -3.1285 35 1 6.7793 -5.6552 -2.1993 36 1 6.7981 -6.3662 -5.8756 37 1 6.7815 -7.1271 -4.2533 38 1 8.9925 -8.2629 -3.7453 39 1 8.6020 -6.8105 -2.7966 40 1 10.9585 -7.5108 -2.4549 41 1 11.2558 -7.3383 -4.2043 42 1 10.3496 -5.1699 -2.4197 43 1 11.2942 -5.2317 -5.2310 44 1 10.8696 -3.7779 -4.3039 45 1 3.6338 -2.5325 -2.1284 46 1 2.9585 -3.9849 -1.2681 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001217899619.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:15 Heat of formation + Delta-G solvation = -50.527069 kcal Electronic energy + Delta-G solvation = -24526.579454 eV Core-core repulsion = 21031.183607 eV Total energy + Delta-G solvation = -3495.395847 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.89420 -39.41832 -37.14410 -36.09870 -33.41305 -32.73452 -30.84401 -30.22459 -29.41289 -26.38007 -25.64047 -24.85797 -23.31102 -22.86647 -21.49254 -21.09416 -20.34488 -19.32134 -17.35264 -16.86734 -16.55919 -16.49951 -15.93106 -15.55909 -15.18661 -14.91460 -14.60358 -14.25989 -14.22621 -13.63146 -13.39311 -13.04216 -12.95893 -12.73192 -12.35751 -12.32081 -12.16978 -12.07711 -12.05136 -11.72662 -11.55661 -11.29141 -11.21366 -11.09466 -10.82144 -10.69747 -10.59626 -9.86549 -9.81125 -9.72019 -9.26719 -9.20878 -8.72498 -8.60227 -7.97772 -6.06199 -4.04272 3.29238 3.36453 3.39774 3.40549 3.62831 3.97298 4.09253 4.25310 4.40408 4.42169 4.63934 4.73726 4.74042 4.80306 4.86930 4.94247 5.01901 5.07830 5.12672 5.17143 5.19834 5.26085 5.27564 5.37712 5.45382 5.47271 5.51685 5.56195 5.66549 5.71547 5.84952 5.89659 6.03052 6.11135 6.34451 6.39630 6.51376 6.55108 6.72497 6.82843 7.07844 7.29940 7.42678 7.75094 7.83216 8.59648 9.00994 9.55192 11.06991 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.029707 B = 0.002782 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.321686 B =10063.804425 C =10260.630688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.876 3.124 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.512 4.512 8 H 0.079 0.921 9 C 0.132 3.868 10 N -0.466 5.466 11 C -0.001 4.001 12 C 0.052 3.948 13 O -0.369 6.369 14 C 0.065 3.935 15 C 0.079 3.921 16 H 0.078 0.922 17 C -0.146 4.146 18 C -0.118 4.118 19 H 0.094 0.906 20 C -0.151 4.151 21 C 0.052 3.948 22 N -0.680 5.680 23 C 0.066 3.934 24 C 0.040 3.960 25 H 0.063 0.937 26 O -0.350 6.350 27 C 0.008 3.992 28 H 0.264 0.736 29 H 0.032 0.968 30 H -0.007 1.007 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.353 0.647 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.227 -16.116 -11.804 29.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.550 4.550 8 H 0.097 0.903 9 C 0.004 3.996 10 N -0.190 5.190 11 C -0.131 4.131 12 C -0.006 4.006 13 O -0.287 6.287 14 C -0.012 4.012 15 C 0.021 3.979 16 H 0.096 0.904 17 C -0.184 4.184 18 C -0.136 4.136 19 H 0.112 0.888 20 C -0.190 4.190 21 C -0.078 4.078 22 N -0.309 5.309 23 C -0.064 4.064 24 C -0.020 4.020 25 H 0.080 0.920 26 O -0.269 6.269 27 C -0.121 4.121 28 H 0.074 0.926 29 H 0.050 0.950 30 H 0.011 0.989 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.106 0.894 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.172 0.828 43 H 0.106 0.894 44 H 0.100 0.900 45 H 0.093 0.907 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 21.583 -15.936 -11.200 29.073 hybrid contribution -0.751 1.022 -0.878 1.542 sum 20.832 -14.914 -12.078 28.324 Atomic orbital electron populations 1.69895 1.06146 1.26897 1.50950 1.24911 0.94770 0.98945 0.94681 0.86836 0.80396 0.83853 0.78563 1.20250 1.21067 1.19083 1.20962 0.88562 0.94811 1.50655 0.90336 1.20665 0.97627 0.85607 0.95681 1.68443 1.03262 1.18701 1.28603 1.24206 0.93990 0.97275 0.97587 1.24390 0.92274 0.99000 0.84915 1.88025 1.74321 1.26667 1.39690 1.22682 0.97579 0.86605 0.94355 1.23165 0.85070 0.93774 0.95886 0.90374 1.23520 0.96085 0.96969 1.01816 1.22720 0.95177 0.96548 0.99192 0.88795 1.22271 0.98616 1.00569 0.97520 1.22069 0.93868 0.89799 1.02058 1.60903 1.60341 1.03127 1.06512 1.21689 0.91436 1.00546 0.92755 1.23127 0.93059 0.91734 0.94045 0.91952 1.88942 1.16876 1.64716 1.56369 1.24209 0.95483 0.98940 0.93500 0.92629 0.95003 0.98886 0.89813 0.91155 0.89370 0.92136 0.93030 0.90207 0.89905 0.91344 0.91274 0.90530 0.90944 0.82838 0.89427 0.89969 0.90659 0.90036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.02 13.96 55.43 0.77 -27.25 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 7 C -0.51 -15.00 9.40 -34.44 -0.32 -15.32 16 8 H 0.08 2.50 8.05 -52.49 -0.42 2.07 16 9 C 0.13 3.33 3.65 -4.97 -0.02 3.31 16 10 N -0.47 -10.25 6.25 -239.98 -1.50 -11.75 16 11 C 0.00 -0.03 7.81 -2.77 -0.02 -0.05 16 12 C 0.05 0.85 4.50 -25.80 -0.12 0.74 16 13 O -0.37 -5.86 10.35 -37.30 -0.39 -6.24 16 14 C 0.06 0.77 5.28 37.16 0.20 0.96 16 15 C 0.08 0.84 3.63 -25.07 -0.09 0.75 16 16 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 17 C -0.15 -1.08 6.07 -23.73 -0.14 -1.23 16 18 C -0.12 -0.82 3.62 -88.60 -0.32 -1.14 16 19 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 20 C -0.15 -1.02 4.93 -26.81 -0.13 -1.15 16 21 C 0.05 0.35 6.53 -3.85 -0.03 0.33 16 22 N -0.68 -5.75 6.95 -114.71 -0.80 -6.55 16 23 C 0.07 0.52 6.24 -4.67 -0.03 0.49 16 24 C 0.04 0.35 3.18 -26.97 -0.09 0.26 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 O -0.35 -4.16 10.64 -37.30 -0.40 -4.56 16 27 C 0.01 0.15 7.29 -2.77 -0.02 0.13 16 28 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 29 H 0.03 0.82 7.20 -51.93 -0.37 0.45 16 30 H -0.01 -0.17 7.12 -51.93 -0.37 -0.54 16 31 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.07 1.32 7.79 -51.93 -0.40 0.91 16 33 H 0.09 1.27 7.87 -51.93 -0.41 0.86 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.57 7.53 -51.93 -0.39 0.18 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.56 7.38 -51.93 -0.38 0.18 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.58 7.18 -51.93 -0.37 0.20 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.44 8.06 -51.93 -0.42 0.02 16 42 H 0.35 3.33 8.70 -39.29 -0.34 2.99 16 43 H 0.09 0.56 8.10 -51.93 -0.42 0.14 16 44 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.08 1.59 7.78 -51.93 -0.40 1.18 16 46 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 LS Contribution 356.46 15.07 5.37 5.37 Total: -1.00 -32.53 356.46 -10.94 -43.47 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -8.11 Total: 0.13 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -1.23 Total: -9.97 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: -1.52 Total: -45.55 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: -0.78 Total: -10.80 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.53 -10.94 -43.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217899619.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.055 kcal (2) G-P(sol) polarization free energy of solvation -32.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds