Wall clock time and date at job start Tue Mar 31 2020 03:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00168 * 2 1 4 4 H 1.48506 * 109.47207 * 269.99766 * 3 2 1 5 5 H 1.48500 * 109.47309 * 30.00017 * 3 2 1 6 6 H 1.48504 * 109.47538 * 149.99884 * 3 2 1 7 7 C 1.37879 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00423 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99911 * 180.02562 * 7 2 1 10 10 N 1.46902 * 109.47253 * 179.97438 * 9 7 2 11 11 C 1.47955 * 110.99696 * 169.99594 * 10 9 7 12 12 C 1.53938 * 86.18093 * 222.41730 * 11 10 9 13 13 O 1.42898 * 113.73693 * 138.08141 * 12 11 10 14 14 C 1.42899 * 114.00175 * 149.99974 * 13 12 11 15 15 C 1.53005 * 109.46801 * 180.02562 * 14 13 12 16 16 H 1.08996 * 109.86924 * 305.44960 * 15 14 13 17 17 C 1.56088 * 109.81786 * 184.47599 * 15 14 13 18 18 C 1.55539 * 103.12025 * 239.84185 * 17 15 14 19 19 H 1.08999 * 112.61749 * 216.83375 * 18 17 15 20 20 C 1.53104 * 106.81444 * 93.08799 * 18 17 15 21 21 C 1.52736 * 110.44987 * 198.48679 * 20 18 17 22 22 N 1.47105 * 108.67757 * 61.14717 * 21 20 18 23 23 C 1.46919 * 109.30147 * 293.85043 * 22 21 20 24 24 C 1.51293 * 110.74741 * 62.55948 * 23 22 21 25 25 H 1.09006 * 108.84737 * 184.98543 * 24 23 22 26 26 O 1.43486 * 112.54277 * 63.71849 * 24 23 22 27 27 C 1.47960 * 110.99885 * 70.63761 * 10 9 7 28 28 H 0.97003 * 120.00303 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.47080 * 59.99673 * 9 7 2 30 30 H 1.09004 * 109.46896 * 299.99970 * 9 7 2 31 31 H 1.09005 * 113.75723 * 108.10216 * 11 10 9 32 32 H 1.08998 * 113.76386 * 336.73409 * 11 10 9 33 33 H 1.09005 * 113.73651 * 269.26422 * 12 11 10 34 34 H 1.08998 * 109.46690 * 60.00222 * 14 13 12 35 35 H 1.08991 * 109.47181 * 300.00295 * 14 13 12 36 36 H 1.08999 * 110.79198 * 121.58018 * 17 15 14 37 37 H 1.08996 * 111.08853 * 358.25190 * 17 15 14 38 38 H 1.09001 * 109.30569 * 78.18752 * 20 18 17 39 39 H 1.08999 * 109.14715 * 318.68582 * 20 18 17 40 40 H 1.09000 * 109.60240 * 180.90879 * 21 20 18 41 41 H 1.09002 * 109.60066 * 301.38600 * 21 20 18 42 42 H 1.00899 * 111.00008 * 58.24387 * 22 21 20 43 43 H 1.08998 * 110.33861 * 301.64799 * 23 22 21 44 44 H 1.09001 * 108.41323 * 182.23459 * 23 22 21 45 45 H 1.08999 * 113.75992 * 23.26200 * 27 10 9 46 46 H 1.08998 * 113.75863 * 251.90469 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0011 10 7 4.0011 -2.5792 0.0022 11 6 5.4604 -2.6257 -0.2371 12 6 5.1656 -3.8146 -1.1695 13 8 5.9124 -3.7894 -2.3876 14 6 6.1969 -5.0838 -2.9219 15 6 6.9964 -4.9360 -4.2181 16 1 6.4626 -4.2850 -4.9104 17 6 7.2139 -6.3381 -4.8685 18 6 8.7631 -6.4695 -4.9144 19 1 9.1142 -6.9774 -5.8126 20 6 9.1841 -7.1957 -3.6339 21 6 10.6703 -6.9753 -3.3595 22 7 10.9072 -5.5350 -3.1772 23 6 10.6516 -4.8366 -4.4443 24 6 9.2055 -4.9936 -4.8605 25 1 9.0709 -4.5417 -5.8433 26 8 8.2966 -4.3855 -3.9315 27 6 3.7466 -3.2326 -1.3006 28 1 -0.4851 0.8400 -0.0004 29 1 3.8744 -0.6801 0.8911 30 1 3.8751 -0.6805 -0.8889 31 1 6.0419 -2.8933 0.6452 32 1 5.8490 -1.7482 -0.7539 33 1 5.1999 -4.7829 -0.6701 34 1 5.2621 -5.6049 -3.1285 35 1 6.7793 -5.6552 -2.1993 36 1 6.7981 -6.3662 -5.8756 37 1 6.7815 -7.1271 -4.2533 38 1 8.9925 -8.2629 -3.7453 39 1 8.6020 -6.8105 -2.7966 40 1 10.9585 -7.5108 -2.4549 41 1 11.2558 -7.3383 -4.2043 42 1 10.3496 -5.1699 -2.4197 43 1 11.2942 -5.2317 -5.2310 44 1 10.8696 -3.7779 -4.3039 45 1 3.6338 -2.5325 -2.1284 46 1 2.9585 -3.9849 -1.2681 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001217899619.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:14 Heat of formation + Delta-G solvation = -77.073047 kcal Electronic energy + Delta-G solvation = -24527.730574 eV Core-core repulsion = 21031.183607 eV Total energy + Delta-G solvation = -3496.546967 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.58175 -40.89173 -38.14709 -37.05972 -34.94666 -34.04619 -31.94597 -31.14801 -30.73108 -27.50445 -27.12534 -26.41726 -23.90225 -23.55280 -23.07062 -22.12851 -20.95339 -20.81229 -19.05264 -18.32899 -17.57763 -17.31461 -17.05552 -16.38280 -16.30161 -16.15570 -15.96390 -15.49561 -15.18005 -14.79833 -14.53335 -14.47644 -14.07523 -13.91848 -13.66350 -13.47398 -13.39092 -13.06094 -12.88709 -12.71503 -12.68643 -12.56096 -12.36209 -12.23150 -11.99132 -11.83906 -11.66507 -11.46455 -11.38193 -11.26442 -10.85764 -10.56475 -10.47771 -9.72438 -9.32475 -8.34770 -6.39471 1.30922 1.32457 1.43985 2.29735 2.49550 2.75963 2.98137 3.20187 3.36376 3.48300 3.51561 3.63756 3.80324 3.88631 4.03067 4.04707 4.14000 4.21125 4.36326 4.39125 4.44620 4.46270 4.47749 4.57176 4.60009 4.63188 4.64478 4.66670 4.77677 4.80602 4.85962 4.92552 4.94396 4.98385 5.01347 5.07013 5.11772 5.34182 5.34957 5.67258 5.89080 5.93356 6.10243 6.26798 6.40945 6.44016 6.65340 7.24462 8.81887 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.029707 B = 0.002782 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.321686 B =10063.804425 C =10260.630688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.010 3.990 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.251 1.251 7 C -0.523 4.523 8 H 0.036 0.964 9 C 0.142 3.858 10 N -0.486 5.486 11 C -0.001 4.001 12 C 0.080 3.920 13 O -0.388 6.388 14 C 0.059 3.941 15 C 0.075 3.925 16 H 0.063 0.937 17 C -0.138 4.138 18 C -0.111 4.111 19 H 0.115 0.885 20 C -0.146 4.146 21 C 0.052 3.948 22 N -0.689 5.689 23 C 0.067 3.933 24 C 0.034 3.966 25 H 0.064 0.936 26 O -0.378 6.378 27 C -0.001 4.001 28 H 0.269 0.731 29 H 0.032 0.968 30 H -0.007 1.007 31 H 0.109 0.891 32 H 0.064 0.936 33 H 0.116 0.884 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.052 0.948 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.344 0.656 43 H 0.106 0.894 44 H 0.069 0.931 45 H 0.054 0.946 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.558 -17.093 -12.515 31.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.188 4.188 3 Si 0.771 3.229 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.174 1.174 7 C -0.561 4.561 8 H 0.055 0.945 9 C 0.014 3.986 10 N -0.210 5.210 11 C -0.130 4.130 12 C 0.021 3.979 13 O -0.307 6.307 14 C -0.017 4.017 15 C 0.017 3.983 16 H 0.081 0.919 17 C -0.175 4.175 18 C -0.129 4.129 19 H 0.133 0.867 20 C -0.185 4.185 21 C -0.077 4.077 22 N -0.318 5.318 23 C -0.063 4.063 24 C -0.025 4.025 25 H 0.082 0.918 26 O -0.297 6.297 27 C -0.130 4.130 28 H 0.078 0.922 29 H 0.050 0.950 30 H 0.011 0.989 31 H 0.127 0.873 32 H 0.082 0.918 33 H 0.133 0.867 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.102 0.898 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.162 0.838 43 H 0.124 0.876 44 H 0.087 0.913 45 H 0.073 0.927 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 23.936 -16.942 -11.923 31.656 hybrid contribution -1.486 1.228 -0.697 2.050 sum 22.450 -15.714 -12.620 30.170 Atomic orbital electron populations 1.70037 1.08059 1.28306 1.52100 1.25866 0.95682 1.03204 0.94046 0.85700 0.79466 0.78530 0.79209 1.19253 1.20123 1.17432 1.21169 0.90821 0.93426 1.50681 0.94546 1.20427 0.94876 0.87900 0.95393 1.68351 1.06062 1.16555 1.30050 1.24282 0.91612 0.97975 0.99148 1.24062 0.89423 0.99335 0.85038 1.88003 1.73873 1.29383 1.39398 1.22958 0.98650 0.85035 0.95089 1.23212 0.84558 0.95470 0.95061 0.91870 1.23504 0.96663 0.95014 1.02356 1.22741 0.94626 0.95399 1.00145 0.86734 1.22226 0.98192 1.01340 0.96763 1.22127 0.94150 0.88749 1.02715 1.60934 1.60253 1.04165 1.06421 1.21721 0.91460 0.99993 0.93106 1.23292 0.92842 0.92879 0.93480 0.91825 1.88914 1.17707 1.65714 1.57401 1.24233 0.98231 0.98674 0.91879 0.92219 0.95032 0.98916 0.87332 0.91798 0.86677 0.90769 0.91886 0.88904 0.88870 0.89773 0.92920 0.90204 0.89843 0.83824 0.87611 0.91271 0.92722 0.90156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.22 13.96 21.45 0.30 -59.92 16 2 C 0.01 0.59 5.47 84.66 0.46 1.05 16 3 Si 0.95 45.43 27.47 68.60 1.88 47.31 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.25 -11.30 6.54 99.48 0.65 -10.65 16 7 C -0.52 -31.51 9.40 25.60 0.24 -31.27 16 8 H 0.04 2.43 8.05 -2.91 -0.02 2.41 16 9 C 0.14 7.22 3.65 85.56 0.31 7.53 16 10 N -0.49 -21.34 6.25 -916.36 -5.73 -27.07 16 11 C 0.00 -0.05 7.81 86.41 0.67 0.62 16 12 C 0.08 2.49 4.50 31.24 0.14 2.64 16 13 O -0.39 -11.91 10.35 -147.00 -1.52 -13.43 16 14 C 0.06 1.30 5.28 71.98 0.38 1.68 16 15 C 0.07 1.50 3.63 31.67 0.12 1.62 16 16 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 17 C -0.14 -1.70 6.07 32.54 0.20 -1.50 16 18 C -0.11 -1.23 3.62 -9.48 -0.03 -1.27 16 19 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 20 C -0.15 -1.60 4.93 30.54 0.15 -1.45 16 21 C 0.05 0.59 6.53 86.18 0.56 1.15 16 22 N -0.69 -10.77 6.95 -516.84 -3.59 -14.37 16 23 C 0.07 0.98 6.24 85.74 0.53 1.51 16 24 C 0.03 0.54 3.18 30.44 0.10 0.64 16 25 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 26 O -0.38 -8.68 10.64 -147.00 -1.56 -10.25 16 27 C 0.00 -0.04 7.29 86.41 0.63 0.59 16 28 H 0.27 15.88 8.31 -92.71 -0.77 15.10 16 29 H 0.03 1.60 7.20 -2.39 -0.02 1.58 16 30 H -0.01 -0.35 7.12 -2.39 -0.02 -0.36 16 31 H 0.11 3.24 8.14 -2.38 -0.02 3.22 16 32 H 0.06 2.32 7.79 -2.39 -0.02 2.31 16 33 H 0.12 3.00 7.87 -2.38 -0.02 2.98 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.06 1.25 7.53 -2.39 -0.02 1.23 16 36 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.09 0.98 7.38 -2.39 -0.02 0.96 16 38 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.05 0.77 7.18 -2.39 -0.02 0.75 16 40 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.08 0.78 8.06 -2.39 -0.02 0.76 16 42 H 0.34 6.28 8.70 -89.69 -0.78 5.50 16 43 H 0.11 1.12 8.10 -2.39 -0.02 1.10 16 44 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.05 2.37 7.78 -2.39 -0.02 2.36 16 46 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -71.77 356.46 -5.64 -77.41 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.11 Total: 16.76 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 4.46 Total: -16.46 kcal Atomic # 7 Polarization: -92.33 SS G_CDS: -9.02 Total: -101.35 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -3.09 Total: -23.68 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.88 Total: 47.31 kcal Total: -71.77 -5.64 -77.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217899619.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.339 kcal (2) G-P(sol) polarization free energy of solvation -71.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds