Wall clock time and date at job start Tue Mar 31 2020 03:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46895 * 109.46770 * 179.72214 * 9 7 2 11 11 C 1.47487 * 110.99661 * 265.96648 * 10 9 7 12 12 C 1.53519 * 87.93131 * 221.29922 * 11 10 9 13 13 O 1.42899 * 114.34051 * 139.68571 * 12 11 10 14 14 C 1.42902 * 113.99939 * 116.07911 * 13 12 11 15 15 C 1.53002 * 109.47250 * 179.97438 * 14 13 12 16 16 H 1.09003 * 109.78409 * 54.20854 * 15 14 13 17 17 C 1.53952 * 109.79298 * 174.99730 * 15 14 13 18 18 C 1.54451 * 104.31573 * 120.88515 * 17 15 14 19 19 H 1.09001 * 108.32741 * 261.31469 * 18 17 15 20 20 C 1.49808 * 110.85668 * 142.33869 * 18 17 15 21 21 C 1.50797 * 117.40986 * 262.86709 * 20 18 17 22 22 N 1.46292 * 112.67382 * 325.64821 * 21 20 18 23 23 C 1.47206 * 109.51139 * 58.81370 * 22 21 20 24 24 C 1.50940 * 108.10167 * 290.26415 * 23 22 21 25 25 H 1.08997 * 109.41736 * 292.78720 * 24 23 22 26 26 O 1.43233 * 109.78984 * 293.37932 * 15 14 13 27 27 C 1.47482 * 110.99583 * 170.00101 * 10 9 7 28 28 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 30 30 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 31 31 H 1.08995 * 113.47973 * 336.06656 * 11 10 9 32 32 H 1.09001 * 113.47018 * 106.53585 * 11 10 9 33 33 H 1.08995 * 114.17339 * 272.37664 * 12 11 10 34 34 H 1.09001 * 109.46753 * 299.99966 * 14 13 12 35 35 H 1.09001 * 109.47029 * 59.99341 * 14 13 12 36 36 H 1.09002 * 110.46667 * 239.59617 * 17 15 14 37 37 H 1.09001 * 110.46543 * 2.17844 * 17 15 14 38 38 H 1.09003 * 107.85444 * 24.86758 * 20 18 17 39 39 H 1.08996 * 107.86170 * 140.85863 * 20 18 17 40 40 H 1.09003 * 108.84292 * 86.47290 * 21 20 18 41 41 H 1.08994 * 108.84161 * 204.93206 * 21 20 18 42 42 H 1.00901 * 111.00298 * 181.71752 * 22 21 20 43 43 H 1.09010 * 109.71202 * 49.73988 * 23 22 21 44 44 H 1.09001 * 109.71508 * 170.32613 * 23 22 21 45 45 H 1.09002 * 113.47552 * 253.46397 * 27 10 9 46 46 H 1.08998 * 113.48119 * 23.93593 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2055 -3.6157 -0.0102 11 6 2.4754 -4.0742 -1.3858 12 6 2.4189 -5.5145 -0.8574 13 8 1.7499 -6.4336 -1.7233 14 6 2.5927 -7.4675 -2.2361 15 6 1.7754 -8.3879 -3.1449 16 1 1.2786 -7.7989 -3.9158 17 6 2.7008 -9.4294 -3.8000 18 6 2.1290 -10.7894 -3.3430 19 1 2.7207 -11.1438 -2.4989 20 6 2.2163 -11.8017 -4.4439 21 6 0.9832 -12.0224 -5.2834 22 7 -0.2541 -11.8847 -4.5151 23 6 -0.3185 -10.5380 -3.9241 24 6 0.7311 -10.4496 -2.8430 25 1 0.4621 -11.1136 -2.0216 26 8 0.8002 -9.0941 -2.3691 27 6 1.5182 -4.8996 0.2230 28 1 -0.4850 0.8401 -0.0004 29 1 0.6242 -2.5609 0.8844 30 1 0.6244 -2.5529 -0.8956 31 1 1.6756 -3.8373 -2.0873 32 1 3.4597 -3.7853 -1.7544 33 1 3.3712 -5.8905 -0.4837 34 1 3.4074 -7.0223 -2.8072 35 1 3.0031 -8.0458 -1.4082 36 1 2.6612 -9.3448 -4.8860 37 1 3.7240 -9.3073 -3.4444 38 1 3.0251 -11.5018 -5.1103 39 1 2.4928 -12.7572 -3.9983 40 1 0.9758 -11.2958 -6.0959 41 1 1.0219 -13.0251 -5.7088 42 1 -1.0609 -12.0646 -5.0937 43 1 -0.1176 -9.7899 -4.6910 44 1 -1.3076 -10.3706 -3.4976 45 1 1.6912 -5.3102 1.2178 46 1 0.4629 -4.8830 -0.0492 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001217899620.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:17 Heat of formation + Delta-G solvation = -49.640579 kcal Electronic energy + Delta-G solvation = -24073.125753 eV Core-core repulsion = 20577.768348 eV Total energy + Delta-G solvation = -3495.357406 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.87663 -39.44438 -37.30115 -36.16508 -33.61886 -32.82188 -31.13050 -30.30018 -29.02134 -26.24091 -25.33141 -24.80151 -23.80921 -23.33898 -21.55530 -21.32562 -19.36880 -19.16591 -17.17232 -16.99551 -16.56799 -16.24133 -16.04646 -15.49321 -15.27734 -15.01969 -14.68619 -14.34695 -13.98451 -13.65133 -13.58861 -13.22848 -13.07442 -12.74699 -12.57237 -12.20838 -12.10086 -11.98140 -11.92580 -11.43425 -11.20628 -11.09109 -10.92803 -10.89481 -10.83484 -10.59263 -10.45901 -10.15755 -9.80235 -9.68624 -9.17344 -9.06164 -8.90946 -8.40932 -7.87543 -6.00535 -4.01695 3.32719 3.39558 3.45054 3.45647 3.68128 3.87034 4.07516 4.29731 4.45602 4.48200 4.64848 4.76093 4.86180 4.90730 4.93284 4.99072 5.03097 5.07070 5.15813 5.19014 5.28524 5.32749 5.34647 5.42160 5.45495 5.50433 5.62819 5.65142 5.78447 5.82119 5.89106 5.98180 6.14903 6.26099 6.35680 6.46399 6.46794 6.64431 6.85540 6.90765 7.24599 7.51257 7.69269 7.89402 8.13809 8.48670 9.05875 9.62011 11.10669 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.039669 B = 0.002334 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.677040 B =11992.719022 C =12172.999949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.052 3.948 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.503 4.503 8 H 0.064 0.936 9 C 0.161 3.839 10 N -0.465 5.465 11 C -0.005 4.005 12 C 0.051 3.949 13 O -0.366 6.366 14 C 0.062 3.938 15 C 0.081 3.919 16 H 0.076 0.924 17 C -0.147 4.147 18 C -0.106 4.106 19 H 0.081 0.919 20 C -0.105 4.105 21 C 0.058 3.942 22 N -0.679 5.679 23 C 0.035 3.965 24 C 0.090 3.910 25 H 0.101 0.899 26 O -0.354 6.354 27 C -0.002 4.002 28 H 0.261 0.739 29 H 0.030 0.970 30 H 0.005 0.995 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.027 0.973 41 H 0.076 0.924 42 H 0.347 0.653 43 H 0.039 0.961 44 H 0.085 0.915 45 H 0.078 0.922 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.964 -26.428 -11.427 29.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.149 4.149 3 Si 0.728 3.272 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.542 4.542 8 H 0.082 0.918 9 C 0.035 3.965 10 N -0.189 5.189 11 C -0.134 4.134 12 C -0.007 4.007 13 O -0.284 6.284 14 C -0.015 4.015 15 C 0.023 3.977 16 H 0.093 0.907 17 C -0.184 4.184 18 C -0.125 4.125 19 H 0.099 0.901 20 C -0.143 4.143 21 C -0.072 4.072 22 N -0.312 5.312 23 C -0.094 4.094 24 C 0.032 3.968 25 H 0.118 0.882 26 O -0.272 6.272 27 C -0.131 4.131 28 H 0.070 0.930 29 H 0.048 0.952 30 H 0.023 0.977 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.110 0.890 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.045 0.955 41 H 0.095 0.905 42 H 0.165 0.835 43 H 0.057 0.943 44 H 0.103 0.897 45 H 0.096 0.904 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.295 -26.240 -10.271 28.504 hybrid contribution -0.163 1.325 -1.447 1.969 sum 4.131 -24.916 -11.718 27.842 Atomic orbital electron populations 1.69977 1.06066 1.26670 1.51219 1.25024 0.94910 0.99415 0.95508 0.86411 0.80067 0.83285 0.77487 1.19653 1.21092 1.20992 1.21145 0.93611 0.89748 1.49707 0.91818 1.20265 0.90593 0.88852 0.96832 1.68945 1.33803 1.01654 1.14505 1.24247 1.02141 0.92829 0.94222 1.24002 0.96327 0.88490 0.91859 1.88012 1.36094 1.39756 1.64572 1.22751 0.92735 0.89144 0.96867 1.22626 0.89304 0.92711 0.93063 0.90656 1.23107 1.00340 0.93635 1.01346 1.21330 0.96923 0.95261 0.98964 0.90062 1.20380 0.97670 0.99243 0.96964 1.21383 0.90189 1.01078 0.94534 1.60626 1.04534 1.28013 1.37981 1.22133 1.00627 0.89364 0.97283 1.21914 0.93458 0.84438 0.96964 0.88163 1.88791 1.59434 1.21414 1.57568 1.24033 0.98114 0.92814 0.98157 0.92973 0.95223 0.97690 0.91120 0.90720 0.89016 0.92290 0.92813 0.90293 0.89912 0.91292 0.91580 0.95522 0.90522 0.83530 0.94319 0.89656 0.90402 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.49 13.29 55.43 0.74 -26.75 16 2 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 3 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.50 -14.81 9.39 -34.44 -0.32 -15.13 16 8 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 9 C 0.16 4.40 4.57 -4.98 -0.02 4.38 16 10 N -0.46 -10.70 6.32 -246.09 -1.55 -12.25 16 11 C 0.00 -0.10 7.56 -7.54 -0.06 -0.15 16 12 C 0.05 0.88 4.65 -26.20 -0.12 0.75 16 13 O -0.37 -6.07 10.38 -37.71 -0.39 -6.46 16 14 C 0.06 0.77 5.21 37.16 0.19 0.96 16 15 C 0.08 0.90 3.55 -26.23 -0.09 0.81 16 16 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 17 C -0.15 -1.15 6.01 -25.47 -0.15 -1.30 16 18 C -0.11 -0.82 3.02 -91.80 -0.28 -1.10 16 19 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 20 C -0.10 -0.64 5.41 -29.42 -0.16 -0.80 16 21 C 0.06 0.35 6.41 -5.26 -0.03 0.32 16 22 N -0.68 -4.83 6.92 -116.38 -0.80 -5.63 16 23 C 0.04 0.31 6.10 -4.69 -0.03 0.28 16 24 C 0.09 0.88 3.56 -28.12 -0.10 0.78 16 25 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 26 O -0.35 -4.59 10.70 -37.71 -0.40 -4.99 16 27 C 0.00 -0.04 7.52 -7.54 -0.06 -0.09 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 29 H 0.03 0.86 8.08 -51.93 -0.42 0.44 16 30 H 0.01 0.15 7.30 -51.93 -0.38 -0.23 16 31 H 0.07 1.50 7.42 -51.93 -0.39 1.11 16 32 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.09 1.38 7.88 -51.93 -0.41 0.97 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.54 7.72 -51.93 -0.40 0.14 16 37 H 0.08 0.56 7.69 -51.93 -0.40 0.16 16 38 H 0.07 0.35 7.55 -51.93 -0.39 -0.04 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.03 0.16 8.09 -51.93 -0.42 -0.26 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.35 1.89 8.90 -39.29 -0.35 1.54 16 43 H 0.04 0.36 7.85 -51.92 -0.41 -0.05 16 44 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 46 H 0.07 1.42 7.91 -51.93 -0.41 1.01 16 LS Contribution 360.81 15.07 5.44 5.44 Total: -1.00 -32.84 360.81 -11.48 -44.32 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -8.15 Total: -1.98 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -1.33 Total: -8.86 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: -1.62 Total: -44.64 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: -0.79 Total: -11.45 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.84 -11.48 -44.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217899620.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.325 kcal (2) G-P(sol) polarization free energy of solvation -32.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds