Wall clock time and date at job start Tue Mar 31 2020 03:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46895 * 109.46770 * 179.72214 * 9 7 2 11 11 C 1.47487 * 110.99661 * 265.96648 * 10 9 7 12 12 C 1.53519 * 87.93131 * 221.29922 * 11 10 9 13 13 O 1.42899 * 114.34051 * 139.68571 * 12 11 10 14 14 C 1.42902 * 113.99939 * 116.07911 * 13 12 11 15 15 C 1.53002 * 109.47250 * 179.97438 * 14 13 12 16 16 H 1.09003 * 109.78409 * 54.20854 * 15 14 13 17 17 C 1.53952 * 109.79298 * 174.99730 * 15 14 13 18 18 C 1.54451 * 104.31573 * 120.88515 * 17 15 14 19 19 H 1.09001 * 108.32741 * 261.31469 * 18 17 15 20 20 C 1.49808 * 110.85668 * 142.33869 * 18 17 15 21 21 C 1.50797 * 117.40986 * 262.86709 * 20 18 17 22 22 N 1.46292 * 112.67382 * 325.64821 * 21 20 18 23 23 C 1.47206 * 109.51139 * 58.81370 * 22 21 20 24 24 C 1.50940 * 108.10167 * 290.26415 * 23 22 21 25 25 H 1.08997 * 109.41736 * 292.78720 * 24 23 22 26 26 O 1.43233 * 109.78984 * 293.37932 * 15 14 13 27 27 C 1.47482 * 110.99583 * 170.00101 * 10 9 7 28 28 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 30 30 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 31 31 H 1.08995 * 113.47973 * 336.06656 * 11 10 9 32 32 H 1.09001 * 113.47018 * 106.53585 * 11 10 9 33 33 H 1.08995 * 114.17339 * 272.37664 * 12 11 10 34 34 H 1.09001 * 109.46753 * 299.99966 * 14 13 12 35 35 H 1.09001 * 109.47029 * 59.99341 * 14 13 12 36 36 H 1.09002 * 110.46667 * 239.59617 * 17 15 14 37 37 H 1.09001 * 110.46543 * 2.17844 * 17 15 14 38 38 H 1.09003 * 107.85444 * 24.86758 * 20 18 17 39 39 H 1.08996 * 107.86170 * 140.85863 * 20 18 17 40 40 H 1.09003 * 108.84292 * 86.47290 * 21 20 18 41 41 H 1.08994 * 108.84161 * 204.93206 * 21 20 18 42 42 H 1.00901 * 111.00298 * 181.71752 * 22 21 20 43 43 H 1.09010 * 109.71202 * 49.73988 * 23 22 21 44 44 H 1.09001 * 109.71508 * 170.32613 * 23 22 21 45 45 H 1.09002 * 113.47552 * 253.46397 * 27 10 9 46 46 H 1.08998 * 113.48119 * 23.93593 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2055 -3.6157 -0.0102 11 6 2.4754 -4.0742 -1.3858 12 6 2.4189 -5.5145 -0.8574 13 8 1.7499 -6.4336 -1.7233 14 6 2.5927 -7.4675 -2.2361 15 6 1.7754 -8.3879 -3.1449 16 1 1.2786 -7.7989 -3.9158 17 6 2.7008 -9.4294 -3.8000 18 6 2.1290 -10.7894 -3.3430 19 1 2.7207 -11.1438 -2.4989 20 6 2.2163 -11.8017 -4.4439 21 6 0.9832 -12.0224 -5.2834 22 7 -0.2541 -11.8847 -4.5151 23 6 -0.3185 -10.5380 -3.9241 24 6 0.7311 -10.4496 -2.8430 25 1 0.4621 -11.1136 -2.0216 26 8 0.8002 -9.0941 -2.3691 27 6 1.5182 -4.8996 0.2230 28 1 -0.4850 0.8401 -0.0004 29 1 0.6242 -2.5609 0.8844 30 1 0.6244 -2.5529 -0.8956 31 1 1.6756 -3.8373 -2.0873 32 1 3.4597 -3.7853 -1.7544 33 1 3.3712 -5.8905 -0.4837 34 1 3.4074 -7.0223 -2.8072 35 1 3.0031 -8.0458 -1.4082 36 1 2.6612 -9.3448 -4.8860 37 1 3.7240 -9.3073 -3.4444 38 1 3.0251 -11.5018 -5.1103 39 1 2.4928 -12.7572 -3.9983 40 1 0.9758 -11.2958 -6.0959 41 1 1.0219 -13.0251 -5.7088 42 1 -1.0609 -12.0646 -5.0937 43 1 -0.1176 -9.7899 -4.6910 44 1 -1.3076 -10.3706 -3.4976 45 1 1.6912 -5.3102 1.2178 46 1 0.4629 -4.8830 -0.0492 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001217899620.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:16 Heat of formation + Delta-G solvation = -75.946161 kcal Electronic energy + Delta-G solvation = -24074.266449 eV Core-core repulsion = 20577.768348 eV Total energy + Delta-G solvation = -3496.498101 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.62150 -41.00867 -38.24814 -37.24412 -35.02755 -34.26694 -32.08339 -30.93237 -30.88440 -27.43356 -26.94081 -26.42914 -24.54576 -23.93490 -23.42695 -22.20856 -20.89076 -19.86644 -18.68260 -18.14328 -17.64800 -17.39647 -17.08004 -16.78772 -16.28331 -16.14672 -15.95413 -15.79571 -15.21330 -14.84904 -14.39555 -14.28706 -14.16572 -14.08344 -13.74259 -13.65439 -13.28378 -13.07373 -12.98868 -12.79071 -12.64984 -12.52037 -12.27778 -12.20151 -12.06649 -11.66087 -11.52309 -11.44476 -11.26605 -11.19182 -10.65502 -10.62149 -10.40504 -9.77748 -9.47757 -8.25387 -6.36794 1.38749 1.39997 1.54378 2.36947 2.53438 2.76159 3.06508 3.25217 3.38343 3.45592 3.46335 3.67137 3.85314 3.88888 4.00857 4.06795 4.18984 4.23784 4.27944 4.36217 4.44406 4.47074 4.49517 4.53812 4.60681 4.64663 4.68554 4.71330 4.81255 4.83296 4.87072 4.91245 4.93630 5.03423 5.09475 5.15833 5.26261 5.30147 5.52812 5.71884 5.88178 6.02669 6.08594 6.31211 6.37103 6.40793 6.77539 7.32893 8.86564 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.039669 B = 0.002334 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.677040 B =11992.719022 C =12172.999949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.977 3.023 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.062 0.938 9 C 0.176 3.824 10 N -0.478 5.478 11 C -0.010 4.010 12 C 0.083 3.917 13 O -0.389 6.389 14 C 0.055 3.945 15 C 0.077 3.923 16 H 0.062 0.938 17 C -0.137 4.137 18 C -0.102 4.102 19 H 0.084 0.916 20 C -0.105 4.105 21 C 0.054 3.946 22 N -0.682 5.682 23 C 0.040 3.960 24 C 0.084 3.916 25 H 0.093 0.907 26 O -0.386 6.386 27 C -0.009 4.009 28 H 0.266 0.734 29 H 0.001 0.999 30 H -0.024 1.024 31 H 0.049 0.951 32 H 0.090 0.910 33 H 0.125 0.875 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.027 0.973 41 H 0.092 0.908 42 H 0.356 0.644 43 H 0.031 0.969 44 H 0.075 0.925 45 H 0.097 0.903 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.330 -27.485 -12.310 30.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.801 3.199 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.081 0.919 9 C 0.049 3.951 10 N -0.201 5.201 11 C -0.140 4.140 12 C 0.025 3.975 13 O -0.307 6.307 14 C -0.022 4.022 15 C 0.019 3.981 16 H 0.079 0.921 17 C -0.174 4.174 18 C -0.121 4.121 19 H 0.103 0.897 20 C -0.143 4.143 21 C -0.075 4.075 22 N -0.316 5.316 23 C -0.090 4.090 24 C 0.026 3.974 25 H 0.111 0.889 26 O -0.305 6.305 27 C -0.138 4.138 28 H 0.075 0.925 29 H 0.019 0.981 30 H -0.006 1.006 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.142 0.858 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.118 0.882 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.046 0.954 41 H 0.110 0.890 42 H 0.174 0.826 43 H 0.049 0.951 44 H 0.094 0.906 45 H 0.115 0.885 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.664 -27.334 -11.168 30.270 hybrid contribution -0.971 1.549 -1.187 2.180 sum 5.693 -25.785 -12.355 29.154 Atomic orbital electron populations 1.70106 1.07870 1.28061 1.51583 1.26037 0.95871 1.03595 0.94555 0.85220 0.78863 0.77924 0.77907 1.18616 1.20124 1.20118 1.21447 0.93682 0.90962 1.50383 0.91941 1.19921 0.90612 0.90541 0.94019 1.68845 1.32771 1.01733 1.16796 1.24285 1.02028 0.95278 0.92377 1.23695 0.96483 0.87266 0.90050 1.87997 1.37633 1.40559 1.64518 1.23082 0.93010 0.88400 0.97682 1.22709 0.89632 0.93285 0.92486 0.92051 1.23092 1.00286 0.92227 1.01814 1.21326 0.95317 0.95707 0.99728 0.89725 1.20404 0.98160 0.98988 0.96735 1.21485 0.89588 1.02005 0.94419 1.60628 1.05606 1.26668 1.38674 1.21998 0.99892 0.90168 0.96914 1.22049 0.95164 0.83082 0.97063 0.88861 1.88754 1.60260 1.23028 1.58467 1.24102 0.97571 0.91722 1.00445 0.92519 0.98131 1.00605 0.93233 0.89189 0.85764 0.90032 0.91646 0.89052 0.88169 0.89698 0.90989 0.95423 0.89007 0.82554 0.95052 0.90602 0.88514 0.93092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.40 13.29 21.45 0.28 -58.11 16 2 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 3 Si 0.98 45.58 29.54 68.60 2.03 47.60 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 7 C -0.53 -31.57 9.39 25.60 0.24 -31.33 16 8 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 9 C 0.18 10.07 4.57 85.56 0.39 10.46 16 10 N -0.48 -22.33 6.32 -932.87 -5.89 -28.22 16 11 C -0.01 -0.41 7.56 83.58 0.63 0.22 16 12 C 0.08 2.74 4.65 30.94 0.14 2.88 16 13 O -0.39 -12.58 10.38 -146.61 -1.52 -14.10 16 14 C 0.05 1.24 5.21 71.98 0.38 1.61 16 15 C 0.08 1.64 3.55 30.92 0.11 1.75 16 16 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 17 C -0.14 -1.81 6.01 31.41 0.19 -1.62 16 18 C -0.10 -1.38 3.02 -11.56 -0.03 -1.41 16 19 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 20 C -0.11 -1.02 5.41 28.85 0.16 -0.86 16 21 C 0.05 0.55 6.41 85.70 0.55 1.10 16 22 N -0.68 -8.94 6.92 -522.11 -3.61 -12.55 16 23 C 0.04 0.69 6.10 85.57 0.52 1.22 16 24 C 0.08 1.60 3.56 29.69 0.11 1.71 16 25 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 26 O -0.39 -10.00 10.70 -146.61 -1.57 -11.57 16 27 C -0.01 -0.36 7.52 83.58 0.63 0.27 16 28 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 29 H 0.00 0.04 8.08 -2.38 -0.02 0.02 16 30 H -0.02 -1.46 7.30 -2.39 -0.02 -1.48 16 31 H 0.05 2.18 7.42 -2.39 -0.02 2.17 16 32 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 33 H 0.12 3.31 7.88 -2.39 -0.02 3.29 16 34 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 36 H 0.09 1.00 7.72 -2.39 -0.02 0.98 16 37 H 0.10 1.00 7.69 -2.39 -0.02 0.98 16 38 H 0.08 0.58 7.55 -2.39 -0.02 0.56 16 39 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.03 0.28 8.09 -2.39 -0.02 0.26 16 41 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.36 3.52 8.90 -89.69 -0.80 2.72 16 43 H 0.03 0.58 7.85 -2.38 -0.02 0.56 16 44 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.10 3.40 8.14 -2.39 -0.02 3.39 16 46 H 0.05 2.19 7.91 -2.39 -0.02 2.17 16 Total: -1.00 -72.50 360.81 -5.66 -78.16 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.15 Total: 12.52 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: 4.47 Total: -13.72 kcal Atomic # 7 Polarization: -89.67 SS G_CDS: -9.22 Total: -98.89 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -3.09 Total: -25.67 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -72.50 -5.66 -78.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217899620.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.212 kcal (2) G-P(sol) polarization free energy of solvation -72.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds