Wall clock time and date at job start Tue Mar 31 2020 03:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47137 * 2 1 4 4 N 1.46496 * 109.47359 * 240.00219 * 2 1 3 5 5 C 1.34778 * 120.00062 * 84.99746 * 4 2 1 6 6 N 1.34778 * 120.00211 * 180.02562 * 5 4 2 7 7 O 1.21586 * 120.00199 * 0.02562 * 5 4 2 8 8 C 1.50704 * 109.47310 * 120.00006 * 2 1 3 9 9 O 1.21278 * 119.99856 * 120.00072 * 8 2 1 10 10 N 1.34770 * 120.00036 * 300.00337 * 8 2 1 11 11 C 1.47290 * 136.54396 * 359.62451 * 10 8 2 12 12 C 1.54367 * 87.49897 * 151.46928 * 11 10 8 13 13 H 1.08999 * 114.92908 * 141.75426 * 12 11 10 14 14 C 1.53067 * 112.44853 * 274.15143 * 12 11 10 15 15 C 1.53144 * 109.21425 * 142.78258 * 14 12 11 16 16 N 1.46541 * 108.25162 * 301.59245 * 15 14 12 17 17 C 1.36936 * 119.73714 * 236.44176 * 16 15 14 18 18 H 1.07997 * 119.99984 * 26.56887 * 17 16 15 19 19 C 1.38818 * 120.00019 * 206.56580 * 17 16 15 20 20 N 1.31611 * 119.99653 * 12.76816 * 19 17 16 21 21 Si 1.86794 * 119.99879 * 192.76510 * 19 17 16 22 22 H 1.48496 * 109.47399 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47321 * 120.00391 * 21 19 17 24 24 H 1.48505 * 109.46869 * 239.99988 * 21 19 17 25 25 C 1.44780 * 120.89468 * 55.60735 * 16 15 14 26 26 C 1.46463 * 136.54366 * 180.02562 * 10 8 2 27 27 H 1.09007 * 111.44399 * 96.34256 * 26 10 8 28 28 H 1.08998 * 109.47137 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47086 * 299.99477 * 1 2 3 30 30 H 1.08999 * 109.47572 * 59.99887 * 1 2 3 31 31 H 0.97002 * 120.00243 * 265.00259 * 4 2 1 32 32 H 0.97003 * 120.00028 * 359.97438 * 6 5 4 33 33 H 0.96998 * 120.00193 * 179.72141 * 6 5 4 34 34 H 1.09007 * 113.52713 * 266.09529 * 11 10 8 35 35 H 1.09001 * 113.52933 * 36.72201 * 11 10 8 36 36 H 1.08999 * 109.51500 * 262.70803 * 14 12 11 37 37 H 1.09003 * 109.51002 * 22.86020 * 14 12 11 38 38 H 1.08998 * 109.70888 * 61.28327 * 15 14 12 39 39 H 1.09001 * 109.70564 * 181.86019 * 15 14 12 40 40 H 0.97000 * 119.99918 * 180.02562 * 20 19 17 41 41 H 1.09002 * 109.76440 * 199.61802 * 25 16 15 42 42 H 1.08993 * 107.24535 * 81.73943 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1961 5 6 2.1470 -0.0182 -2.3571 6 7 2.5958 -0.6535 -3.4577 7 8 1.8583 1.1617 -2.4116 8 6 2.0323 -0.7104 1.2305 9 8 2.7296 -1.6965 1.1192 10 7 1.7067 -0.2500 2.4545 11 6 0.9226 0.8703 3.0018 12 6 0.6399 -0.0174 4.2326 13 1 0.6382 0.5083 5.1875 14 6 -0.5700 -0.9324 4.0279 15 6 -0.2967 -2.2854 4.6912 16 7 0.9142 -2.8536 4.0925 17 6 0.8681 -4.0939 3.5139 18 1 -0.0615 -4.4673 3.1105 19 6 2.0163 -4.8711 3.4457 20 7 3.0787 -4.5384 4.1477 21 14 2.0534 -6.3891 2.3578 22 1 0.7419 -6.5434 1.6785 23 1 3.1245 -6.2425 1.3397 24 1 2.3230 -7.5886 3.1907 25 6 2.1587 -2.1138 4.0877 26 6 1.9785 -0.6336 3.8417 27 1 2.8143 -0.0687 4.2549 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 2.2490 -1.6317 -1.1527 32 1 2.8266 -1.5947 -3.4142 33 1 2.6846 -0.1706 -4.2942 34 1 1.5228 1.7513 3.2294 35 1 0.0323 1.1043 2.4181 36 1 -1.4514 -0.4770 4.4795 37 1 -0.7403 -1.0775 2.9611 38 1 -0.1469 -2.1464 5.7618 39 1 -1.1401 -2.9548 4.5219 40 1 3.8811 -5.0813 4.0998 41 1 2.8246 -2.5177 3.3251 42 1 2.6215 -2.2535 5.0645 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221501665.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:43 Heat of formation + Delta-G solvation = 7.221558 kcal Electronic energy + Delta-G solvation = -25716.141168 eV Core-core repulsion = 22119.709146 eV Total energy + Delta-G solvation = -3596.432022 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.74112 -39.81263 -37.85719 -35.30864 -34.72205 -33.72130 -32.20311 -30.62773 -30.14045 -28.48361 -26.98449 -24.40849 -23.82291 -22.88445 -21.19559 -20.86962 -19.79890 -18.66127 -17.77014 -17.42448 -16.61293 -15.85772 -15.76259 -15.55889 -15.17292 -14.66287 -14.37577 -13.98435 -13.93781 -13.62361 -13.34239 -13.05484 -12.92304 -12.46602 -12.34854 -12.15827 -11.87080 -11.49610 -11.40922 -11.06355 -10.71908 -10.68068 -10.48131 -10.32525 -10.18170 -9.90785 -9.80712 -9.76486 -9.55731 -9.18992 -8.88781 -8.32593 -8.17514 -6.57297 -5.67435 -3.11971 2.70997 3.04974 3.20776 3.38411 3.43807 3.50147 3.51953 4.47325 4.56441 4.58605 4.64529 5.12495 5.18925 5.24838 5.34760 5.44562 5.50663 5.56633 5.68808 5.76385 5.81881 5.89954 6.02800 6.12679 6.22341 6.28668 6.39717 6.45028 6.50574 6.58245 6.69738 6.77349 6.86567 6.99392 7.49985 7.76335 7.92393 7.95701 8.25337 8.56729 8.58421 8.63694 9.35574 9.99213 10.45860 11.40165 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.013279 B = 0.006435 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.010252 B = 4350.077106 C = 5784.455499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.151 3.849 3 H 0.106 0.894 4 N -0.725 5.725 5 C 0.710 3.290 6 N -0.867 5.867 7 O -0.602 6.602 8 C 0.537 3.463 9 O -0.515 6.515 10 N -0.627 5.627 11 C 0.090 3.910 12 C -0.112 4.112 13 H 0.091 0.909 14 C -0.116 4.116 15 C 0.149 3.851 16 N -0.584 5.584 17 C -0.253 4.253 18 H 0.061 0.939 19 C 0.011 3.989 20 N -0.903 5.903 21 Si 0.902 3.098 22 H -0.280 1.280 23 H -0.289 1.289 24 H -0.292 1.292 25 C 0.169 3.831 26 C 0.118 3.882 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.408 0.592 32 H 0.399 0.601 33 H 0.413 0.587 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.020 0.980 39 H 0.056 0.944 40 H 0.251 0.749 41 H 0.101 0.899 42 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.366 11.057 -6.549 13.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.042 3.958 3 H 0.124 0.876 4 N -0.383 5.383 5 C 0.408 3.592 6 N -0.435 5.435 7 O -0.481 6.481 8 C 0.324 3.676 9 O -0.390 6.390 10 N -0.364 5.364 11 C -0.033 4.033 12 C -0.132 4.132 13 H 0.110 0.890 14 C -0.155 4.155 15 C 0.023 3.977 16 N -0.306 5.306 17 C -0.383 4.383 18 H 0.079 0.921 19 C -0.187 4.187 20 N -0.548 5.548 21 Si 0.732 3.268 22 H -0.205 1.205 23 H -0.216 1.216 24 H -0.219 1.219 25 C 0.042 3.958 26 C 0.015 3.985 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.245 0.755 32 H 0.227 0.773 33 H 0.245 0.755 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.038 0.962 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.119 0.881 42 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -4.027 11.310 -6.686 13.742 hybrid contribution 0.506 -1.334 -0.951 1.715 sum -3.521 9.976 -7.637 13.048 Atomic orbital electron populations 1.22200 0.93284 1.03317 1.03043 1.20491 0.95361 0.97140 0.82839 0.87587 1.44838 1.70848 1.14668 1.07932 1.15851 0.77888 0.84798 0.80621 1.42932 1.73627 1.15121 1.11838 1.90937 1.57921 1.14374 1.84881 1.19802 0.80483 0.84733 0.82547 1.90775 1.37568 1.25488 1.85132 1.49351 1.52641 1.29587 1.04799 1.23536 0.95078 0.90916 0.93815 1.22784 0.96645 0.96688 0.97052 0.89039 1.21828 0.94596 0.97445 1.01637 1.20719 0.90680 0.91902 0.94443 1.43227 1.05608 1.15776 1.66009 1.19121 0.95990 0.91965 1.31186 0.92126 1.24973 0.97298 0.97705 0.98744 1.70011 1.03687 1.39846 1.41211 0.86238 0.77447 0.82768 0.80335 1.20512 1.21592 1.21905 1.20042 0.89450 0.84706 1.01593 1.22726 0.95939 1.01453 0.78422 0.90878 0.91619 0.90784 0.91326 0.75488 0.77322 0.75501 0.90197 0.90513 0.92587 0.92022 0.96219 0.92584 0.93861 0.88064 0.95376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.37 37.16 0.35 -1.81 16 2 C 0.15 2.31 2.88 -69.09 -0.20 2.11 16 3 H 0.11 1.60 7.58 -51.93 -0.39 1.21 16 4 N -0.73 -10.61 4.96 -59.82 -0.30 -10.91 16 5 C 0.71 10.10 8.80 -86.92 -0.77 9.33 16 6 N -0.87 -8.36 8.88 27.63 0.25 -8.12 16 7 O -0.60 -10.53 16.84 5.29 0.09 -10.44 16 8 C 0.54 10.06 7.41 -10.99 -0.08 9.98 16 9 O -0.51 -11.95 15.08 5.56 0.08 -11.86 16 10 N -0.63 -10.77 3.30 -187.49 -0.62 -11.39 16 11 C 0.09 1.13 7.45 -11.39 -0.08 1.04 16 12 C -0.11 -1.62 4.52 -90.14 -0.41 -2.03 16 13 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 14 C -0.12 -1.82 5.75 -26.62 -0.15 -1.97 16 15 C 0.15 2.98 6.47 -3.94 -0.03 2.95 16 16 N -0.58 -14.48 3.01 -175.61 -0.53 -15.01 16 17 C -0.25 -7.05 9.50 -15.06 -0.14 -7.20 16 18 H 0.06 1.68 7.84 -52.49 -0.41 1.27 16 19 C 0.01 0.33 4.97 -17.43 -0.09 0.24 16 20 N -0.90 -26.96 10.93 55.49 0.61 -26.35 16 21 Si 0.90 22.71 29.57 -169.99 -5.03 17.68 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 C 0.17 4.08 4.51 -5.91 -0.03 4.05 16 26 C 0.12 2.18 4.04 -77.67 -0.31 1.86 16 27 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.07 0.89 5.25 -51.93 -0.27 0.62 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.41 5.99 7.80 -40.82 -0.32 5.67 16 32 H 0.40 2.96 8.84 -40.82 -0.36 2.60 16 33 H 0.41 3.27 8.93 -40.82 -0.36 2.90 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.08 0.84 5.71 -51.93 -0.30 0.54 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.06 1.05 7.76 -51.93 -0.40 0.65 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 1.11 7.88 -51.93 -0.41 0.70 16 40 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.10 2.89 5.07 -51.93 -0.26 2.63 16 42 H 0.03 0.75 7.92 -51.93 -0.41 0.34 16 LS Contribution 335.43 15.07 5.05 5.05 Total: -1.00 -35.55 335.43 -8.33 -43.87 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -6.00 Total: 8.90 kcal Atomic # 6 Polarization: 20.51 SS G_CDS: -1.94 Total: 18.57 kcal Atomic # 7 Polarization: -71.18 SS G_CDS: -0.59 Total: -71.78 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: 0.17 Total: -22.31 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.03 Total: 17.68 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.55 -8.33 -43.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221501665.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.096 kcal (2) G-P(sol) polarization free energy of solvation -35.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds