Wall clock time and date at job start Tue Mar 31 2020 03:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47137 * 2 1 4 4 N 1.46496 * 109.47359 * 240.00219 * 2 1 3 5 5 C 1.34778 * 120.00062 * 84.99746 * 4 2 1 6 6 N 1.34778 * 120.00211 * 180.02562 * 5 4 2 7 7 O 1.21586 * 120.00199 * 0.02562 * 5 4 2 8 8 C 1.50704 * 109.47310 * 120.00006 * 2 1 3 9 9 O 1.21278 * 119.99856 * 120.00072 * 8 2 1 10 10 N 1.34770 * 120.00036 * 300.00337 * 8 2 1 11 11 C 1.47290 * 136.54396 * 359.62451 * 10 8 2 12 12 C 1.54367 * 87.49897 * 151.46928 * 11 10 8 13 13 H 1.08999 * 114.92908 * 141.75426 * 12 11 10 14 14 C 1.53067 * 112.44853 * 274.15143 * 12 11 10 15 15 C 1.53144 * 109.21425 * 142.78258 * 14 12 11 16 16 N 1.46541 * 108.25162 * 301.59245 * 15 14 12 17 17 C 1.36936 * 119.73714 * 236.44176 * 16 15 14 18 18 H 1.07997 * 119.99984 * 26.56887 * 17 16 15 19 19 C 1.38818 * 120.00019 * 206.56580 * 17 16 15 20 20 N 1.31611 * 119.99653 * 12.76816 * 19 17 16 21 21 Si 1.86794 * 119.99879 * 192.76510 * 19 17 16 22 22 H 1.48496 * 109.47399 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47321 * 120.00391 * 21 19 17 24 24 H 1.48505 * 109.46869 * 239.99988 * 21 19 17 25 25 C 1.44780 * 120.89468 * 55.60735 * 16 15 14 26 26 C 1.46463 * 136.54366 * 180.02562 * 10 8 2 27 27 H 1.09007 * 111.44399 * 96.34256 * 26 10 8 28 28 H 1.08998 * 109.47137 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47086 * 299.99477 * 1 2 3 30 30 H 1.08999 * 109.47572 * 59.99887 * 1 2 3 31 31 H 0.97002 * 120.00243 * 265.00259 * 4 2 1 32 32 H 0.97003 * 120.00028 * 359.97438 * 6 5 4 33 33 H 0.96998 * 120.00193 * 179.72141 * 6 5 4 34 34 H 1.09007 * 113.52713 * 266.09529 * 11 10 8 35 35 H 1.09001 * 113.52933 * 36.72201 * 11 10 8 36 36 H 1.08999 * 109.51500 * 262.70803 * 14 12 11 37 37 H 1.09003 * 109.51002 * 22.86020 * 14 12 11 38 38 H 1.08998 * 109.70888 * 61.28327 * 15 14 12 39 39 H 1.09001 * 109.70564 * 181.86019 * 15 14 12 40 40 H 0.97000 * 119.99918 * 180.02562 * 20 19 17 41 41 H 1.09002 * 109.76440 * 199.61802 * 25 16 15 42 42 H 1.08993 * 107.24535 * 81.73943 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1961 5 6 2.1470 -0.0182 -2.3571 6 7 2.5958 -0.6535 -3.4577 7 8 1.8583 1.1617 -2.4116 8 6 2.0323 -0.7104 1.2305 9 8 2.7296 -1.6965 1.1192 10 7 1.7067 -0.2500 2.4545 11 6 0.9226 0.8703 3.0018 12 6 0.6399 -0.0174 4.2326 13 1 0.6382 0.5083 5.1875 14 6 -0.5700 -0.9324 4.0279 15 6 -0.2967 -2.2854 4.6912 16 7 0.9142 -2.8536 4.0925 17 6 0.8681 -4.0939 3.5139 18 1 -0.0615 -4.4673 3.1105 19 6 2.0163 -4.8711 3.4457 20 7 3.0787 -4.5384 4.1477 21 14 2.0534 -6.3891 2.3578 22 1 0.7419 -6.5434 1.6785 23 1 3.1245 -6.2425 1.3397 24 1 2.3230 -7.5886 3.1907 25 6 2.1587 -2.1138 4.0877 26 6 1.9785 -0.6336 3.8417 27 1 2.8143 -0.0687 4.2549 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 2.2490 -1.6317 -1.1527 32 1 2.8266 -1.5947 -3.4142 33 1 2.6846 -0.1706 -4.2942 34 1 1.5228 1.7513 3.2294 35 1 0.0323 1.1043 2.4181 36 1 -1.4514 -0.4770 4.4795 37 1 -0.7403 -1.0775 2.9611 38 1 -0.1469 -2.1464 5.7618 39 1 -1.1401 -2.9548 4.5219 40 1 3.8811 -5.0813 4.0998 41 1 2.8246 -2.5177 3.3251 42 1 2.6215 -2.2535 5.0645 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221501665.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:43 Heat of formation + Delta-G solvation = -22.297206 kcal Electronic energy + Delta-G solvation = -25717.421197 eV Core-core repulsion = 22119.709146 eV Total energy + Delta-G solvation = -3597.712051 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.07000 -40.98055 -39.28446 -37.10007 -35.97508 -34.74262 -33.98116 -32.01404 -31.73676 -29.91209 -28.59919 -25.81580 -25.42559 -24.34100 -22.59702 -22.14272 -21.11477 -19.83542 -19.38691 -18.56553 -18.12202 -17.35775 -17.25435 -16.83076 -16.38459 -16.23920 -15.76854 -15.66664 -15.19681 -15.17066 -14.75651 -14.49231 -14.41682 -13.99026 -13.78060 -13.40590 -13.31683 -13.07731 -12.81337 -12.68326 -12.56126 -12.28808 -12.16117 -11.92874 -11.73476 -11.54488 -11.43289 -11.01658 -10.79220 -10.67066 -10.39532 -10.11314 -9.53516 -8.61292 -7.82305 -5.28790 1.38145 1.41832 1.49686 1.56148 1.67084 2.07676 2.19463 2.49957 3.31402 3.35125 3.45282 3.55595 3.77693 3.97120 4.02724 4.08513 4.22522 4.36713 4.50751 4.56320 4.69059 4.73317 4.74465 4.81371 4.84999 4.97285 5.10743 5.14198 5.20393 5.30826 5.35565 5.47253 5.60008 5.72894 5.78466 5.85556 5.99810 6.43096 6.89342 6.95922 7.21431 7.23202 7.56381 8.01088 8.37726 9.21355 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.013279 B = 0.006435 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.010252 B = 4350.077106 C = 5784.455499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.160 3.840 3 H 0.113 0.887 4 N -0.729 5.729 5 C 0.708 3.292 6 N -0.846 5.846 7 O -0.634 6.634 8 C 0.528 3.472 9 O -0.574 6.574 10 N -0.633 5.633 11 C 0.103 3.897 12 C -0.100 4.100 13 H 0.129 0.871 14 C -0.105 4.105 15 C 0.140 3.860 16 N -0.600 5.600 17 C -0.254 4.254 18 H 0.059 0.941 19 C -0.046 4.046 20 N -0.934 5.934 21 Si 0.957 3.043 22 H -0.266 1.266 23 H -0.299 1.299 24 H -0.289 1.289 25 C 0.184 3.816 26 C 0.105 3.895 27 H 0.089 0.911 28 H 0.050 0.950 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.407 0.593 32 H 0.411 0.589 33 H 0.424 0.576 34 H 0.116 0.884 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.048 0.952 38 H 0.025 0.975 39 H 0.051 0.949 40 H 0.243 0.757 41 H 0.051 0.949 42 H -0.011 1.011 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.450 13.506 -6.989 16.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.050 3.950 3 H 0.131 0.869 4 N -0.386 5.386 5 C 0.406 3.594 6 N -0.415 5.415 7 O -0.516 6.516 8 C 0.317 3.683 9 O -0.453 6.453 10 N -0.368 5.368 11 C -0.018 4.018 12 C -0.119 4.119 13 H 0.147 0.853 14 C -0.144 4.144 15 C 0.015 3.985 16 N -0.323 5.323 17 C -0.385 4.385 18 H 0.077 0.923 19 C -0.241 4.241 20 N -0.581 5.581 21 Si 0.786 3.214 22 H -0.191 1.191 23 H -0.227 1.227 24 H -0.216 1.216 25 C 0.057 3.943 26 C 0.000 4.000 27 H 0.107 0.893 28 H 0.069 0.931 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.243 0.757 32 H 0.242 0.758 33 H 0.258 0.742 34 H 0.134 0.866 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.066 0.934 38 H 0.043 0.957 39 H 0.070 0.930 40 H 0.052 0.948 41 H 0.069 0.931 42 H 0.007 0.993 Dipole moment (debyes) X Y Z Total from point charges -6.167 13.789 -7.130 16.704 hybrid contribution 1.137 -2.115 -0.756 2.518 sum -5.030 11.674 -7.887 14.959 Atomic orbital electron populations 1.22125 0.91587 1.02681 1.04282 1.20456 0.96424 0.96653 0.81421 0.86941 1.44878 1.71020 1.14563 1.08124 1.15981 0.77880 0.84437 0.81131 1.42753 1.71996 1.15741 1.11059 1.90909 1.59552 1.15741 1.85445 1.20472 0.79721 0.84204 0.83900 1.90750 1.40262 1.28204 1.86133 1.49516 1.52494 1.30899 1.03846 1.23765 0.95839 0.90117 0.92099 1.22824 0.92961 0.96265 0.99884 0.85298 1.21712 0.96998 0.95095 1.00576 1.20965 0.88408 0.94253 0.94898 1.43467 1.07166 1.15321 1.66390 1.19407 0.95667 0.93134 1.30267 0.92330 1.25677 0.97353 1.00625 1.00418 1.70190 1.03966 1.40886 1.43013 0.85349 0.77471 0.79934 0.78598 1.19051 1.22700 1.21554 1.19617 0.88386 0.88510 0.97808 1.22732 0.99545 0.97438 0.80236 0.89303 0.93123 0.88807 0.90708 0.75707 0.75840 0.74218 0.86644 0.87921 0.88130 0.93360 0.95690 0.93037 0.94759 0.93096 0.99312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.37 71.98 0.67 -2.98 16 2 C 0.16 4.68 2.88 44.25 0.13 4.81 16 3 H 0.11 3.17 7.58 -2.39 -0.02 3.16 16 4 N -0.73 -20.99 4.96 -461.42 -2.29 -23.28 16 5 C 0.71 19.35 8.80 179.05 1.58 20.92 16 6 N -0.85 -15.14 8.88 -184.74 -1.64 -16.78 16 7 O -0.63 -21.34 16.84 -3.99 -0.07 -21.41 16 8 C 0.53 19.69 7.41 87.66 0.65 20.34 16 9 O -0.57 -27.80 15.08 -3.02 -0.05 -27.84 16 10 N -0.63 -20.63 3.30 -865.49 -2.86 -23.48 16 11 C 0.10 2.07 7.45 81.19 0.60 2.67 16 12 C -0.10 -2.47 4.52 -10.48 -0.05 -2.52 16 13 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16 14 C -0.10 -2.90 5.75 30.67 0.18 -2.73 16 15 C 0.14 5.40 6.47 86.42 0.56 5.96 16 16 N -0.60 -30.33 3.01 -709.49 -2.14 -32.47 16 17 C -0.25 -14.57 9.50 84.03 0.80 -13.77 16 18 H 0.06 3.31 7.84 -2.91 -0.02 3.28 16 19 C -0.05 -2.71 4.97 84.86 0.42 -2.29 16 20 N -0.93 -58.78 10.93 21.65 0.24 -58.54 16 21 Si 0.96 48.35 29.57 68.60 2.03 50.37 16 22 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 23 H -0.30 -15.49 7.11 99.48 0.71 -14.79 16 24 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 25 C 0.18 9.21 4.51 86.09 0.39 9.60 16 26 C 0.11 3.74 4.04 38.70 0.16 3.89 16 27 H 0.09 2.87 8.14 -2.38 -0.02 2.85 16 28 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.09 1.88 5.25 -2.39 -0.01 1.87 16 30 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.41 12.11 7.80 -92.71 -0.72 11.39 16 32 H 0.41 5.56 8.84 -92.71 -0.82 4.74 16 33 H 0.42 5.96 8.93 -92.71 -0.83 5.13 16 34 H 0.12 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.10 1.62 5.71 -2.39 -0.01 1.60 16 36 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.05 1.49 7.76 -2.39 -0.02 1.47 16 38 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.05 2.00 7.88 -2.39 -0.02 1.98 16 40 H 0.24 15.00 8.31 -92.71 -0.77 14.23 16 41 H 0.05 3.08 5.07 -2.39 -0.01 3.07 16 42 H -0.01 -0.61 7.92 -2.39 -0.02 -0.63 16 Total: -1.00 -83.72 335.43 -1.98 -85.70 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: -1.29 Total: 23.82 kcal Atomic # 6 Polarization: 37.83 SS G_CDS: 6.08 Total: 43.92 kcal Atomic # 7 Polarization: -145.87 SS G_CDS: -8.68 Total: -154.55 kcal Atomic # 8 Polarization: -49.14 SS G_CDS: -0.11 Total: -49.25 kcal Atomic # 14 Polarization: 48.35 SS G_CDS: 2.03 Total: 50.37 kcal Total: -83.72 -1.98 -85.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221501665.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.398 kcal (2) G-P(sol) polarization free energy of solvation -83.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds