Wall clock time and date at job start Tue Mar 31 2020 03:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00044 * 2 1 4 4 H 1.48502 * 109.47189 * 86.23233 * 3 2 1 5 5 H 1.48501 * 109.46864 * 206.23330 * 3 2 1 6 6 H 1.48504 * 109.47177 * 326.23022 * 3 2 1 7 7 C 1.38815 * 119.99729 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00084 * 163.00210 * 7 2 1 9 9 N 1.36937 * 119.99959 * 342.99586 * 7 2 1 10 10 C 1.46929 * 120.63206 * 331.86470 * 9 7 2 11 11 C 1.52764 * 109.00608 * 233.58578 * 10 9 7 12 12 C 1.53046 * 109.37895 * 305.58439 * 11 10 9 13 13 C 1.53039 * 109.53618 * 61.24509 * 12 11 10 14 14 H 1.09003 * 109.49979 * 58.58464 * 13 12 11 15 15 N 1.46506 * 109.52256 * 178.66335 * 13 12 11 16 16 C 1.34767 * 120.00160 * 204.85268 * 15 13 12 17 17 O 1.21287 * 120.00309 * 0.02562 * 16 15 13 18 18 C 1.50701 * 120.00087 * 180.02562 * 16 15 13 19 19 C 1.53004 * 109.47083 * 180.02562 * 18 16 15 20 20 C 1.52996 * 109.47148 * 180.02562 * 19 18 16 21 21 H 1.09004 * 110.45804 * 54.29574 * 20 19 18 22 22 C 1.54510 * 110.51523 * 176.90089 * 20 19 18 23 23 C 1.54481 * 104.06349 * 118.63867 * 22 20 19 24 24 O 1.44424 * 104.79880 * 23.98337 * 23 22 20 25 25 C 1.44638 * 105.37288 * 319.55940 * 24 23 22 26 26 C 1.46920 * 120.62822 * 152.14133 * 9 7 2 27 27 H 0.96996 * 119.99625 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.58621 * 353.41496 * 10 9 7 29 29 H 1.08991 * 109.58638 * 113.84202 * 10 9 7 30 30 H 1.08996 * 109.56533 * 185.55583 * 11 10 9 31 31 H 1.08997 * 109.36277 * 65.49703 * 11 10 9 32 32 H 1.09000 * 109.46044 * 301.22118 * 12 11 10 33 33 H 1.08996 * 109.44672 * 181.25491 * 12 11 10 34 34 H 0.97001 * 119.99564 * 24.85436 * 15 13 12 35 35 H 1.08998 * 109.47152 * 299.99825 * 18 16 15 36 36 H 1.08994 * 109.47074 * 60.00232 * 18 16 15 37 37 H 1.09007 * 109.46847 * 300.00050 * 19 18 16 38 38 H 1.08996 * 109.47379 * 59.99542 * 19 18 16 39 39 H 1.08991 * 110.51333 * 237.28945 * 22 20 19 40 40 H 1.09001 * 110.50773 * 0.02562 * 22 20 19 41 41 H 1.09002 * 110.37027 * 142.81065 * 23 22 20 42 42 H 1.08991 * 110.37516 * 265.04093 * 23 22 20 43 43 H 1.08993 * 110.34347 * 281.59841 * 25 24 23 44 44 H 1.09003 * 110.50894 * 159.18710 * 25 24 23 45 45 H 1.09006 * 109.58812 * 246.15431 * 26 9 7 46 46 H 1.09004 * 109.58737 * 6.44239 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4181 2.0924 1.3971 5 1 3.5854 1.4184 -0.6189 6 1 1.4898 2.6284 -0.7783 7 6 2.0103 -1.2022 -0.0005 8 1 3.0549 -1.2226 -0.2740 9 7 1.3704 -2.3623 0.3458 10 6 0.2272 -2.3400 1.2685 11 6 0.4935 -3.3150 2.4140 12 6 0.8119 -4.6977 1.8405 13 6 2.0697 -4.6145 0.9726 14 1 2.9023 -4.2477 1.5729 15 7 2.3925 -5.9444 0.4495 16 6 3.6597 -6.2418 0.1003 17 8 4.5330 -5.4087 0.2195 18 6 3.9916 -7.6096 -0.4383 19 6 5.4868 -7.6844 -0.7539 20 6 5.8237 -9.0728 -1.3013 21 1 5.1869 -9.3113 -2.1532 22 6 7.3141 -9.1502 -1.7011 23 6 7.8904 -10.2561 -0.7893 24 8 6.7529 -11.0727 -0.4357 25 6 5.6722 -10.1417 -0.1962 26 6 1.8178 -3.6536 -0.1936 27 1 -0.4849 0.8400 -0.0004 28 1 0.1002 -1.3341 1.6687 29 1 -0.6761 -2.6413 0.7383 30 1 -0.3888 -3.3797 3.0508 31 1 1.3409 -2.9605 3.0007 32 1 -0.0260 -5.0409 1.2337 33 1 0.9802 -5.3994 2.6573 34 1 1.6940 -6.6108 0.3546 35 1 3.7397 -8.3644 0.3067 36 1 3.4185 -7.7910 -1.3474 37 1 5.7391 -6.9295 -1.4987 38 1 6.0597 -7.5031 0.1555 39 1 7.4142 -9.4293 -2.7499 40 1 7.8111 -8.1995 -1.5083 41 1 8.6286 -10.8478 -1.3307 42 1 8.3370 -9.8177 0.1031 43 1 5.7755 -9.6864 0.7887 44 1 4.7088 -10.6441 -0.2838 45 1 1.0467 -4.0643 -0.8455 46 1 2.7386 -3.5138 -0.7600 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267612023.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:56 Heat of formation + Delta-G solvation = -81.718960 kcal Electronic energy + Delta-G solvation = -24224.293581 eV Core-core repulsion = 20727.545152 eV Total energy + Delta-G solvation = -3496.748429 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.02175 -39.38336 -37.40069 -34.71204 -34.23962 -32.43885 -31.12513 -30.46154 -29.25782 -28.13966 -25.28360 -24.66943 -22.97598 -22.13867 -21.73311 -20.49140 -20.05549 -19.25365 -16.98774 -16.79608 -16.62144 -15.96878 -15.79586 -15.50470 -15.14279 -14.72537 -14.29534 -13.94622 -13.71129 -13.53617 -13.25098 -13.02104 -12.90142 -12.46729 -12.38372 -12.32896 -11.88847 -11.75325 -11.66628 -11.18097 -11.07772 -10.94361 -10.87640 -10.79933 -10.73867 -10.25831 -10.21038 -10.08378 -9.93116 -9.90241 -9.63400 -9.43802 -8.80014 -8.39505 -6.66549 -5.77750 -3.20242 2.86466 3.36782 3.40418 3.47137 3.50122 3.68617 4.24361 4.42687 4.51966 4.59893 4.78612 4.79631 4.95495 5.02285 5.09920 5.26834 5.33415 5.37463 5.39640 5.43578 5.45537 5.52879 5.55388 5.62629 5.66655 5.71053 5.73873 5.95851 6.08411 6.10640 6.16862 6.24217 6.47998 6.53245 6.61407 6.69024 6.69995 6.84717 7.00656 7.36184 7.64589 7.77372 7.83935 8.44412 8.50864 9.22987 9.85233 10.40935 11.31067 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.024906 B = 0.002830 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.952174 B = 9890.396567 C =10712.964790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.278 1.278 6 H -0.291 1.291 7 C -0.250 4.250 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.167 3.833 11 C -0.140 4.140 12 C -0.114 4.114 13 C 0.125 3.875 14 H 0.085 0.915 15 N -0.724 5.724 16 C 0.507 3.493 17 O -0.538 6.538 18 C -0.142 4.142 19 C -0.095 4.095 20 C -0.123 4.123 21 H 0.085 0.915 22 C -0.152 4.152 23 C 0.044 3.956 24 O -0.380 6.380 25 C 0.046 3.954 26 C 0.143 3.857 27 H 0.253 0.747 28 H 0.089 0.911 29 H 0.018 0.982 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.394 0.606 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.091 0.909 45 H 0.016 0.984 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.388 -20.448 0.085 21.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.203 1.203 6 H -0.218 1.218 7 C -0.380 4.380 8 H 0.084 0.916 9 N -0.311 5.311 10 C 0.041 3.959 11 C -0.180 4.180 12 C -0.152 4.152 13 C 0.019 3.981 14 H 0.103 0.897 15 N -0.375 5.375 16 C 0.293 3.707 17 O -0.415 6.415 18 C -0.182 4.182 19 C -0.133 4.133 20 C -0.141 4.141 21 H 0.103 0.897 22 C -0.190 4.190 23 C -0.033 4.033 24 O -0.299 6.299 25 C -0.030 4.030 26 C 0.016 3.984 27 H 0.063 0.937 28 H 0.107 0.893 29 H 0.037 0.963 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.227 0.773 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.109 0.891 45 H 0.034 0.966 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.911 -19.899 0.167 21.415 hybrid contribution -0.076 0.764 -0.086 0.773 sum 7.834 -19.135 0.081 20.677 Atomic orbital electron populations 1.70044 1.05236 1.25455 1.54152 1.25036 0.95317 0.98405 1.00899 0.86249 0.79230 0.83549 0.77637 1.21433 1.20311 1.21781 1.19244 0.92696 0.84641 1.41374 0.91564 1.43990 1.35647 1.01172 1.50277 1.20749 0.88646 0.98493 0.87983 1.22111 1.00439 0.95266 1.00135 1.21671 0.96782 0.98531 0.98257 1.21730 0.97680 0.81576 0.97088 0.89731 1.46184 1.09336 1.15944 1.66047 1.20612 0.82619 0.89639 0.77869 1.90734 1.47017 1.50165 1.53555 1.21719 0.98666 0.95242 1.02602 1.21400 0.94283 0.95288 1.02342 1.22606 0.96904 0.95735 0.98902 0.89708 1.23012 0.95357 1.00006 1.00645 1.23415 0.89706 0.92368 0.97803 1.89135 1.20616 1.30234 1.89903 1.23626 0.91410 0.90226 0.97760 1.21171 0.97825 0.86804 0.92634 0.93678 0.89312 0.96349 0.92699 0.92470 0.92277 0.93158 0.77279 0.89256 0.88917 0.90504 0.90879 0.90619 0.90004 0.89266 0.92240 0.91941 0.89080 0.96598 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.43 11.20 55.49 0.62 -25.81 16 2 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 3 Si 0.90 22.18 29.59 -169.99 -5.03 17.15 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 7 C -0.25 -7.09 9.58 -15.06 -0.14 -7.23 16 8 H 0.07 1.90 7.88 -52.49 -0.41 1.48 16 9 N -0.59 -15.06 3.00 -172.58 -0.52 -15.58 16 10 C 0.17 3.96 5.28 -3.93 -0.02 3.94 16 11 C -0.14 -2.61 6.07 -26.83 -0.16 -2.77 16 12 C -0.11 -1.83 5.36 -26.69 -0.14 -1.97 16 13 C 0.12 2.22 2.60 -67.81 -0.18 2.05 16 14 H 0.08 1.75 7.58 -51.93 -0.39 1.36 16 15 N -0.72 -9.95 5.08 -53.69 -0.27 -10.22 16 16 C 0.51 7.23 7.80 -10.99 -0.09 7.14 16 17 O -0.54 -10.26 15.65 5.55 0.09 -10.18 16 18 C -0.14 -1.31 5.56 -27.88 -0.16 -1.46 16 19 C -0.10 -0.91 3.71 -26.73 -0.10 -1.01 16 20 C -0.12 -0.96 3.13 -89.05 -0.28 -1.24 16 21 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 22 C -0.15 -1.14 6.74 -25.16 -0.17 -1.31 16 23 C 0.04 0.34 7.64 37.93 0.29 0.63 16 24 O -0.38 -3.85 11.65 -35.23 -0.41 -4.26 16 25 C 0.05 0.37 6.43 37.94 0.24 0.62 16 26 C 0.14 3.14 6.09 -3.71 -0.02 3.11 16 27 H 0.25 7.13 8.31 -40.82 -0.34 6.80 16 28 H 0.09 2.36 6.06 -51.93 -0.31 2.05 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.39 4.04 8.60 -40.82 -0.35 3.69 16 35 H 0.09 0.63 7.55 -51.93 -0.39 0.24 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 38 H 0.07 0.78 7.97 -51.93 -0.41 0.36 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.60 7.73 -51.93 -0.40 0.20 16 41 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.50 7.78 -51.93 -0.40 0.09 16 44 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.06 1.34 7.93 -51.93 -0.41 0.93 16 LS Contribution 361.59 15.07 5.45 5.45 Total: -1.00 -33.09 361.59 -9.21 -42.30 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -8.13 Total: 0.68 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -1.01 Total: 0.48 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: -0.17 Total: -51.62 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.32 Total: -14.44 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.09 -9.21 -42.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267612023.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.422 kcal (2) G-P(sol) polarization free energy of solvation -33.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds