Wall clock time and date at job start Tue Mar 31 2020 03:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00044 * 2 1 4 4 H 1.48502 * 109.47189 * 86.23233 * 3 2 1 5 5 H 1.48501 * 109.46864 * 206.23330 * 3 2 1 6 6 H 1.48504 * 109.47177 * 326.23022 * 3 2 1 7 7 C 1.38815 * 119.99729 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00084 * 163.00210 * 7 2 1 9 9 N 1.36937 * 119.99959 * 342.99586 * 7 2 1 10 10 C 1.46929 * 120.63206 * 331.86470 * 9 7 2 11 11 C 1.52764 * 109.00608 * 233.58578 * 10 9 7 12 12 C 1.53046 * 109.37895 * 305.58439 * 11 10 9 13 13 C 1.53039 * 109.53618 * 61.24509 * 12 11 10 14 14 H 1.09003 * 109.49979 * 58.58464 * 13 12 11 15 15 N 1.46506 * 109.52256 * 178.66335 * 13 12 11 16 16 C 1.34767 * 120.00160 * 204.85268 * 15 13 12 17 17 O 1.21287 * 120.00309 * 0.02562 * 16 15 13 18 18 C 1.50701 * 120.00087 * 180.02562 * 16 15 13 19 19 C 1.53004 * 109.47083 * 180.02562 * 18 16 15 20 20 C 1.52996 * 109.47148 * 180.02562 * 19 18 16 21 21 H 1.09004 * 110.45804 * 54.29574 * 20 19 18 22 22 C 1.54510 * 110.51523 * 176.90089 * 20 19 18 23 23 C 1.54481 * 104.06349 * 118.63867 * 22 20 19 24 24 O 1.44424 * 104.79880 * 23.98337 * 23 22 20 25 25 C 1.44638 * 105.37288 * 319.55940 * 24 23 22 26 26 C 1.46920 * 120.62822 * 152.14133 * 9 7 2 27 27 H 0.96996 * 119.99625 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.58621 * 353.41496 * 10 9 7 29 29 H 1.08991 * 109.58638 * 113.84202 * 10 9 7 30 30 H 1.08996 * 109.56533 * 185.55583 * 11 10 9 31 31 H 1.08997 * 109.36277 * 65.49703 * 11 10 9 32 32 H 1.09000 * 109.46044 * 301.22118 * 12 11 10 33 33 H 1.08996 * 109.44672 * 181.25491 * 12 11 10 34 34 H 0.97001 * 119.99564 * 24.85436 * 15 13 12 35 35 H 1.08998 * 109.47152 * 299.99825 * 18 16 15 36 36 H 1.08994 * 109.47074 * 60.00232 * 18 16 15 37 37 H 1.09007 * 109.46847 * 300.00050 * 19 18 16 38 38 H 1.08996 * 109.47379 * 59.99542 * 19 18 16 39 39 H 1.08991 * 110.51333 * 237.28945 * 22 20 19 40 40 H 1.09001 * 110.50773 * 0.02562 * 22 20 19 41 41 H 1.09002 * 110.37027 * 142.81065 * 23 22 20 42 42 H 1.08991 * 110.37516 * 265.04093 * 23 22 20 43 43 H 1.08993 * 110.34347 * 281.59841 * 25 24 23 44 44 H 1.09003 * 110.50894 * 159.18710 * 25 24 23 45 45 H 1.09006 * 109.58812 * 246.15431 * 26 9 7 46 46 H 1.09004 * 109.58737 * 6.44239 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4181 2.0924 1.3971 5 1 3.5854 1.4184 -0.6189 6 1 1.4898 2.6284 -0.7783 7 6 2.0103 -1.2022 -0.0005 8 1 3.0549 -1.2226 -0.2740 9 7 1.3704 -2.3623 0.3458 10 6 0.2272 -2.3400 1.2685 11 6 0.4935 -3.3150 2.4140 12 6 0.8119 -4.6977 1.8405 13 6 2.0697 -4.6145 0.9726 14 1 2.9023 -4.2477 1.5729 15 7 2.3925 -5.9444 0.4495 16 6 3.6597 -6.2418 0.1003 17 8 4.5330 -5.4087 0.2195 18 6 3.9916 -7.6096 -0.4383 19 6 5.4868 -7.6844 -0.7539 20 6 5.8237 -9.0728 -1.3013 21 1 5.1869 -9.3113 -2.1532 22 6 7.3141 -9.1502 -1.7011 23 6 7.8904 -10.2561 -0.7893 24 8 6.7529 -11.0727 -0.4357 25 6 5.6722 -10.1417 -0.1962 26 6 1.8178 -3.6536 -0.1936 27 1 -0.4849 0.8400 -0.0004 28 1 0.1002 -1.3341 1.6687 29 1 -0.6761 -2.6413 0.7383 30 1 -0.3888 -3.3797 3.0508 31 1 1.3409 -2.9605 3.0007 32 1 -0.0260 -5.0409 1.2337 33 1 0.9802 -5.3994 2.6573 34 1 1.6940 -6.6108 0.3546 35 1 3.7397 -8.3644 0.3067 36 1 3.4185 -7.7910 -1.3474 37 1 5.7391 -6.9295 -1.4987 38 1 6.0597 -7.5031 0.1555 39 1 7.4142 -9.4293 -2.7499 40 1 7.8111 -8.1995 -1.5083 41 1 8.6286 -10.8478 -1.3307 42 1 8.3370 -9.8177 0.1031 43 1 5.7755 -9.6864 0.7887 44 1 4.7088 -10.6441 -0.2838 45 1 1.0467 -4.0643 -0.8455 46 1 2.7386 -3.5138 -0.7600 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267612023.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:56 Heat of formation + Delta-G solvation = -104.365170 kcal Electronic energy + Delta-G solvation = -24225.275594 eV Core-core repulsion = 20727.545152 eV Total energy + Delta-G solvation = -3497.730442 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.05658 -40.26429 -38.98035 -35.96293 -35.39925 -34.13960 -32.36200 -31.91826 -30.43876 -29.14455 -27.27785 -25.54441 -23.92708 -23.81079 -23.04800 -21.36410 -21.14786 -20.77899 -18.73737 -17.98276 -17.41390 -17.10701 -16.78596 -16.59140 -16.41055 -16.05754 -15.75731 -15.39698 -15.03634 -14.89336 -14.62680 -14.23193 -14.10725 -13.87381 -13.55916 -13.39402 -13.19466 -13.03870 -12.78094 -12.57826 -12.43015 -12.34589 -12.11969 -11.98807 -11.85000 -11.76137 -11.59619 -11.57846 -11.39380 -11.31406 -10.75254 -10.72825 -10.62801 -10.06667 -8.71155 -7.92824 -5.38741 1.42648 1.43823 1.53761 1.73765 2.23405 2.49631 3.07644 3.21051 3.61547 3.65664 3.78986 3.84598 3.92964 4.04152 4.11043 4.17588 4.24980 4.30040 4.37594 4.45692 4.47882 4.56751 4.67285 4.72990 4.80334 4.83391 4.86917 4.91523 4.93870 5.01385 5.06226 5.08318 5.11916 5.19399 5.24416 5.27477 5.38615 5.48362 5.60142 5.61025 5.74847 5.87290 6.34723 6.68707 7.10685 7.40148 7.80564 8.30138 9.12874 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.024906 B = 0.002830 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.952174 B = 9890.396567 C =10712.964790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.044 4.044 3 Si 0.966 3.034 4 H -0.282 1.282 5 H -0.275 1.275 6 H -0.288 1.288 7 C -0.268 4.268 8 H 0.052 0.948 9 N -0.608 5.608 10 C 0.171 3.829 11 C -0.131 4.131 12 C -0.103 4.103 13 C 0.140 3.860 14 H 0.053 0.947 15 N -0.711 5.711 16 C 0.501 3.499 17 O -0.593 6.593 18 C -0.130 4.130 19 C -0.091 4.091 20 C -0.115 4.115 21 H 0.098 0.902 22 C -0.154 4.154 23 C 0.040 3.960 24 O -0.402 6.402 25 C 0.043 3.957 26 C 0.146 3.854 27 H 0.253 0.747 28 H 0.053 0.947 29 H 0.005 0.995 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.417 0.583 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.101 0.899 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.110 0.890 45 H 0.021 0.979 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.856 -22.822 0.433 23.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.240 4.240 3 Si 0.794 3.206 4 H -0.209 1.209 5 H -0.200 1.200 6 H -0.214 1.214 7 C -0.398 4.398 8 H 0.069 0.931 9 N -0.332 5.332 10 C 0.046 3.954 11 C -0.170 4.170 12 C -0.141 4.141 13 C 0.033 3.967 14 H 0.071 0.929 15 N -0.363 5.363 16 C 0.289 3.711 17 O -0.474 6.474 18 C -0.169 4.169 19 C -0.129 4.129 20 C -0.133 4.133 21 H 0.116 0.884 22 C -0.192 4.192 23 C -0.037 4.037 24 O -0.322 6.322 25 C -0.033 4.033 26 C 0.019 3.981 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.023 0.977 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.254 0.746 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.119 0.881 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.128 0.872 45 H 0.039 0.961 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 7.358 -22.336 0.515 23.523 hybrid contribution 0.116 1.495 -0.238 1.519 sum 7.473 -20.841 0.277 22.142 Atomic orbital electron populations 1.70169 1.06366 1.26022 1.54903 1.25738 0.96157 1.01237 1.00878 0.85282 0.78049 0.79606 0.77687 1.20862 1.19986 1.21402 1.19396 0.92424 0.86375 1.41656 0.93055 1.44225 1.36064 1.01695 1.51257 1.20629 0.87611 0.98123 0.89056 1.21954 1.01328 0.95481 0.98266 1.21599 0.95936 0.97473 0.99114 1.21199 0.97704 0.82639 0.95138 0.92907 1.45967 1.10163 1.14693 1.65461 1.21591 0.81862 0.91035 0.76577 1.90722 1.48620 1.52326 1.55697 1.21755 0.98502 0.92291 1.04368 1.21313 0.94555 0.95922 1.01087 1.22538 0.97235 0.94324 0.99239 0.88378 1.23034 0.95300 0.99746 1.01121 1.23532 0.89572 0.92488 0.98074 1.89111 1.21568 1.31407 1.90068 1.23751 0.91792 0.90111 0.97628 1.21213 0.96242 0.86483 0.94155 0.93818 0.92846 0.97659 0.89681 0.93618 0.90505 0.89441 0.74596 0.85946 0.86209 0.92558 0.92508 0.89773 0.90441 0.88076 0.92205 0.92058 0.87237 0.96109 0.95457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.61 11.20 21.65 0.24 -55.36 16 2 C -0.04 -2.56 4.91 84.86 0.42 -2.14 16 3 Si 0.97 46.61 29.59 68.60 2.03 48.64 16 4 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 5 H -0.27 -12.99 7.11 99.48 0.71 -12.29 16 6 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 7 C -0.27 -15.77 9.58 84.03 0.81 -14.97 16 8 H 0.05 3.09 7.88 -2.91 -0.02 3.07 16 9 N -0.61 -32.08 3.00 -699.92 -2.10 -34.17 16 10 C 0.17 8.23 5.28 86.22 0.45 8.68 16 11 C -0.13 -4.69 6.07 30.53 0.19 -4.50 16 12 C -0.10 -2.99 5.36 30.62 0.16 -2.83 16 13 C 0.14 4.87 2.60 45.07 0.12 4.99 16 14 H 0.05 2.21 7.58 -2.39 -0.02 2.19 16 15 N -0.71 -17.95 5.08 -442.15 -2.25 -20.19 16 16 C 0.50 13.66 7.80 87.66 0.68 14.34 16 17 O -0.59 -23.14 15.65 -3.05 -0.05 -23.18 16 18 C -0.13 -2.01 5.56 29.85 0.17 -1.85 16 19 C -0.09 -1.62 3.71 30.59 0.11 -1.51 16 20 C -0.11 -1.54 3.13 -9.78 -0.03 -1.57 16 21 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 22 C -0.15 -2.11 6.74 31.61 0.21 -1.90 16 23 C 0.04 0.57 7.64 72.49 0.55 1.13 16 24 O -0.40 -7.42 11.65 -148.98 -1.74 -9.16 16 25 C 0.04 0.59 6.43 72.49 0.47 1.06 16 26 C 0.15 6.50 6.09 86.36 0.53 7.03 16 27 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 28 H 0.05 2.93 6.06 -2.39 -0.01 2.91 16 29 H 0.01 0.26 8.14 -2.39 -0.02 0.25 16 30 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.42 6.88 8.60 -92.71 -0.80 6.08 16 35 H 0.12 1.17 7.55 -2.39 -0.02 1.15 16 36 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.06 1.24 8.10 -2.38 -0.02 1.22 16 38 H 0.06 1.20 7.97 -2.39 -0.02 1.18 16 39 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.08 1.12 7.73 -2.39 -0.02 1.10 16 41 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.06 0.84 7.78 -2.39 -0.02 0.82 16 44 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 46 H 0.03 1.34 7.93 -2.38 -0.02 1.32 16 Total: -1.00 -75.93 361.59 1.13 -74.80 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 0.15 Total: 12.67 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 4.84 Total: 5.97 kcal Atomic # 7 Polarization: -105.63 SS G_CDS: -4.10 Total: -109.73 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -1.78 Total: -32.34 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -75.93 1.13 -74.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267612023.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.569 kcal (2) G-P(sol) polarization free energy of solvation -75.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds