Wall clock time and date at job start Tue Mar 31 2020 03:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35343 * 117.00154 * 2 1 4 4 C 1.39001 * 126.40821 * 264.71455 * 3 2 1 5 5 C 1.46922 * 126.49227 * 0.02562 * 4 3 2 6 6 O 1.21664 * 120.00167 * 359.71444 * 5 4 3 7 7 N 1.34775 * 119.99551 * 179.71192 * 5 4 3 8 8 C 1.46503 * 119.99844 * 179.72712 * 7 5 4 9 9 C 1.53000 * 109.46966 * 180.02562 * 8 7 5 10 10 C 1.53009 * 109.47033 * 179.97438 * 9 8 7 11 11 H 1.09006 * 109.46624 * 305.00021 * 10 9 8 12 12 C 1.52994 * 109.47001 * 184.99925 * 10 9 8 13 13 N 1.46495 * 109.47100 * 64.99693 * 10 9 8 14 14 C 1.36940 * 119.99719 * 205.00241 * 13 10 9 15 15 H 1.07996 * 120.00035 * 0.02562 * 14 13 10 16 16 C 1.38815 * 119.99601 * 180.02562 * 14 13 10 17 17 N 1.31624 * 119.99688 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00409 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47388 * 89.99500 * 18 16 14 20 20 H 1.48497 * 109.47242 * 210.00246 * 18 16 14 21 21 H 1.48507 * 109.46818 * 329.99885 * 18 16 14 22 22 C 1.41459 * 107.00789 * 179.75429 * 4 3 2 23 23 N 1.30317 * 108.13808 * 0.23845 * 22 4 3 24 24 N 1.34657 * 126.40514 * 84.88233 * 3 2 1 25 25 C 1.46499 * 125.74380 * 0.02562 * 24 3 2 26 26 H 1.09001 * 109.47111 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46963 * 299.97541 * 1 2 3 28 28 H 1.08998 * 109.47505 * 59.97630 * 1 2 3 29 29 H 0.97006 * 120.00486 * 0.02562 * 7 5 4 30 30 H 1.09001 * 109.46875 * 299.99539 * 8 7 5 31 31 H 1.08992 * 109.47270 * 59.99892 * 8 7 5 32 32 H 1.09005 * 109.47317 * 299.99365 * 9 8 7 33 33 H 1.09001 * 109.47222 * 60.00023 * 9 8 7 34 34 H 1.09001 * 109.47217 * 59.99847 * 12 10 9 35 35 H 1.09003 * 109.46770 * 179.97438 * 12 10 9 36 36 H 1.09002 * 109.47045 * 299.99638 * 12 10 9 37 37 H 0.96997 * 120.00273 * 24.99906 * 13 10 9 38 38 H 0.97003 * 119.99485 * 180.02562 * 17 16 14 39 39 H 1.08000 * 125.93494 * 180.21944 * 22 4 3 40 40 H 1.09000 * 109.47383 * 275.43127 * 25 24 3 41 41 H 1.09005 * 109.47215 * 35.42959 * 25 24 3 42 42 H 1.08995 * 109.47498 * 155.42979 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2059 0.0000 4 6 2.5099 1.8942 -1.1139 5 6 2.4286 1.4508 -2.5123 6 8 1.9166 0.3806 -2.7824 7 7 2.9210 2.2296 -3.4958 8 6 2.8453 1.7849 -4.8897 9 6 3.4712 2.8451 -5.7980 10 6 3.3927 2.3803 -7.2537 11 1 3.8573 1.3987 -7.3471 12 6 4.1280 3.3800 -8.1485 13 7 1.9890 2.2973 -7.6648 14 6 1.6220 1.4568 -8.6816 15 1 2.3673 0.8548 -9.1802 16 6 0.2920 1.3785 -9.0715 17 7 -0.0607 0.5710 -10.0492 18 14 -0.9969 2.4203 -8.2096 19 1 -1.1272 3.7244 -8.9078 20 1 -2.3023 1.7129 -8.2341 21 1 -0.5856 2.6516 -6.8015 22 6 3.0720 3.1053 -0.6466 23 7 2.9537 3.1333 0.6509 24 7 2.3202 1.9619 1.0795 25 6 2.0060 1.6180 2.4684 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5135 0.8902 28 1 -0.3634 0.5142 -0.8897 29 1 3.3295 3.0827 -3.2805 30 1 3.3872 0.8457 -5.0012 31 1 1.8018 1.6376 -5.1679 32 1 2.9297 3.7846 -5.6865 33 1 4.5147 2.9919 -5.5196 34 1 5.1723 3.4417 -7.8426 35 1 4.0724 3.0486 -9.1854 36 1 3.6633 4.3615 -8.0550 37 1 1.3196 2.8377 -7.2167 38 1 -0.9900 0.5166 -10.3219 39 1 3.5214 3.8732 -1.2587 40 1 0.9803 1.9112 2.6922 41 1 2.1155 0.5427 2.6102 42 1 2.6882 2.1439 3.1362 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274822795.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:22 Heat of formation + Delta-G solvation = 20.299211 kcal Electronic energy + Delta-G solvation = -23767.975324 eV Core-core repulsion = 20172.110391 eV Total energy + Delta-G solvation = -3595.864932 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.82168 -39.04226 -38.39939 -36.65452 -34.34951 -33.70352 -32.18138 -30.41180 -29.69472 -28.56202 -27.40803 -27.03741 -23.92200 -23.02657 -22.16315 -21.19993 -20.43982 -19.79760 -18.54680 -17.56153 -16.90667 -16.71248 -16.11181 -15.45020 -15.27775 -15.00602 -14.86577 -14.60940 -14.02996 -13.92387 -13.69477 -13.51482 -13.11544 -13.08984 -12.76941 -12.49301 -12.24049 -12.13898 -11.87904 -11.63092 -11.15713 -11.00461 -10.74080 -10.61163 -10.54448 -10.35744 -9.98501 -9.79691 -9.66799 -9.52903 -9.01019 -8.89043 -8.68552 -7.21790 -5.71224 -3.06372 0.97296 1.77950 1.89657 3.16814 3.39779 3.42165 3.44836 3.49838 3.55016 4.08007 4.61010 4.64612 4.64999 4.71441 4.83391 4.94561 4.98270 5.04761 5.21210 5.26062 5.31962 5.42124 5.55229 5.64891 5.70343 5.74557 6.02476 6.04110 6.13614 6.31093 6.33192 6.43837 6.56055 6.71083 6.83225 7.02131 7.03638 7.14853 7.72066 8.05346 8.47270 8.47981 9.26495 9.99067 10.18382 11.47389 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.018963 B = 0.003443 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.242830 B = 8130.840970 C = 9000.929733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.296 6.296 3 C 0.320 3.680 4 C -0.292 4.292 5 C 0.588 3.412 6 O -0.535 6.535 7 N -0.726 5.726 8 C 0.124 3.876 9 C -0.136 4.136 10 C 0.179 3.821 11 H 0.058 0.942 12 C -0.164 4.164 13 N -0.748 5.748 14 C -0.240 4.240 15 H 0.090 0.910 16 C 0.004 3.996 17 N -0.935 5.935 18 Si 0.883 3.117 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.277 1.277 22 C 0.091 3.909 23 N -0.280 5.280 24 N -0.373 5.373 25 C 0.093 3.907 26 H 0.108 0.892 27 H 0.045 0.955 28 H 0.062 0.938 29 H 0.394 0.606 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.039 0.961 35 H 0.058 0.942 36 H 0.044 0.956 37 H 0.360 0.640 38 H 0.258 0.742 39 H 0.196 0.804 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.896 5.795 25.910 27.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.204 6.204 3 C 0.146 3.854 4 C -0.308 4.308 5 C 0.374 3.626 6 O -0.412 6.412 7 N -0.378 5.378 8 C 0.001 3.999 9 C -0.175 4.175 10 C 0.070 3.930 11 H 0.076 0.924 12 C -0.224 4.224 13 N -0.392 5.392 14 C -0.369 4.369 15 H 0.108 0.892 16 C -0.191 4.191 17 N -0.583 5.583 18 Si 0.713 3.287 19 H -0.212 1.212 20 H -0.218 1.218 21 H -0.203 1.203 22 C -0.096 4.096 23 N -0.103 5.103 24 N -0.162 5.162 25 C -0.047 4.047 26 H 0.126 0.874 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.228 0.772 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.193 0.807 38 H 0.069 0.931 39 H 0.212 0.788 40 H 0.096 0.904 41 H 0.110 0.890 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.744 5.179 26.680 27.778 hybrid contribution -1.180 0.832 0.002 1.444 sum 4.564 6.011 26.682 27.729 Atomic orbital electron populations 1.23152 0.76528 1.04658 1.01221 1.86029 1.21443 1.20131 1.92817 1.19351 0.95028 0.84618 0.86370 1.20137 1.18318 0.98694 0.93621 1.16966 0.78286 0.84039 0.83268 1.90842 1.44486 1.22109 1.83724 1.45847 1.61931 1.22677 1.07299 1.21428 1.02945 0.97661 0.77877 1.22112 1.00416 0.98371 0.96559 1.20128 0.86380 0.97198 0.89335 0.92388 1.22392 0.98175 1.00074 1.01726 1.42827 1.02907 1.51258 1.42164 1.19069 0.93748 1.16013 1.08114 0.89178 1.24655 0.96813 0.99318 0.98356 1.69703 1.16953 1.40871 1.30797 0.86570 0.82268 0.80324 0.79498 1.21247 1.21849 1.20312 1.23928 0.97279 0.96457 0.91954 1.77206 1.18554 1.01056 1.13474 1.48955 1.45818 1.14433 1.07018 1.21994 1.02526 1.02639 0.77587 0.87375 0.93621 0.91923 0.77244 0.91392 0.90316 0.91739 0.91375 0.94209 0.92275 0.93644 0.80705 0.93145 0.78764 0.90418 0.89039 0.88364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 11.13 101.05 1.12 1.49 16 2 O -0.30 -3.74 9.83 -24.98 -0.25 -3.98 16 3 C 0.32 4.01 6.99 -16.03 -0.11 3.90 16 4 C -0.29 -3.82 6.15 -104.87 -0.64 -4.46 16 5 C 0.59 9.25 7.80 -12.75 -0.10 9.15 16 6 O -0.53 -10.70 16.38 -2.03 -0.03 -10.73 16 7 N -0.73 -9.71 5.55 -61.54 -0.34 -10.05 16 8 C 0.12 1.99 5.56 -4.04 -0.02 1.96 16 9 C -0.14 -1.93 4.87 -26.73 -0.13 -2.06 16 10 C 0.18 3.29 2.89 -67.93 -0.20 3.09 16 11 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 12 C -0.16 -2.73 9.49 37.15 0.35 -2.38 16 13 N -0.75 -17.33 4.38 -53.42 -0.23 -17.56 16 14 C -0.24 -6.73 10.41 -15.06 -0.16 -6.89 16 15 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 16 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 17 N -0.94 -29.76 13.97 55.49 0.78 -28.99 16 18 Si 0.88 22.51 27.74 -169.99 -4.71 17.79 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 21 H -0.28 -6.68 6.52 56.52 0.37 -6.32 16 22 C 0.09 0.92 11.50 -16.97 -0.20 0.72 16 23 N -0.28 -3.05 12.48 30.88 0.39 -2.66 16 24 N -0.37 -3.83 3.99 -67.67 -0.27 -4.10 16 25 C 0.09 0.53 11.38 59.85 0.68 1.21 16 26 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.39 3.77 7.42 -40.82 -0.30 3.46 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.08 1.55 7.75 -51.93 -0.40 1.14 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.36 8.27 5.66 -40.82 -0.23 8.04 16 38 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 39 H 0.20 1.20 7.50 -52.49 -0.39 0.80 16 40 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 359.18 15.07 5.41 5.41 Total: -1.00 -37.18 359.18 -5.17 -42.36 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -6.41 Total: 6.74 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: 0.51 Total: 5.77 kcal Atomic # 7 Polarization: -63.67 SS G_CDS: 0.31 Total: -63.36 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.28 Total: -14.71 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.71 Total: 17.79 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -37.18 -5.17 -42.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274822795.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.657 kcal (2) G-P(sol) polarization free energy of solvation -37.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds