Wall clock time and date at job start Tue Mar 31 2020 03:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35343 * 117.00154 * 2 1 4 4 C 1.39001 * 126.40821 * 264.71455 * 3 2 1 5 5 C 1.46922 * 126.49227 * 0.02562 * 4 3 2 6 6 O 1.21664 * 120.00167 * 359.71444 * 5 4 3 7 7 N 1.34775 * 119.99551 * 179.71192 * 5 4 3 8 8 C 1.46503 * 119.99844 * 179.72712 * 7 5 4 9 9 C 1.53000 * 109.46966 * 180.02562 * 8 7 5 10 10 C 1.53009 * 109.47033 * 179.97438 * 9 8 7 11 11 H 1.09006 * 109.46624 * 305.00021 * 10 9 8 12 12 C 1.52994 * 109.47001 * 184.99925 * 10 9 8 13 13 N 1.46495 * 109.47100 * 64.99693 * 10 9 8 14 14 C 1.36940 * 119.99719 * 205.00241 * 13 10 9 15 15 H 1.07996 * 120.00035 * 0.02562 * 14 13 10 16 16 C 1.38815 * 119.99601 * 180.02562 * 14 13 10 17 17 N 1.31624 * 119.99688 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00409 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47388 * 89.99500 * 18 16 14 20 20 H 1.48497 * 109.47242 * 210.00246 * 18 16 14 21 21 H 1.48507 * 109.46818 * 329.99885 * 18 16 14 22 22 C 1.41459 * 107.00789 * 179.75429 * 4 3 2 23 23 N 1.30317 * 108.13808 * 0.23845 * 22 4 3 24 24 N 1.34657 * 126.40514 * 84.88233 * 3 2 1 25 25 C 1.46499 * 125.74380 * 0.02562 * 24 3 2 26 26 H 1.09001 * 109.47111 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46963 * 299.97541 * 1 2 3 28 28 H 1.08998 * 109.47505 * 59.97630 * 1 2 3 29 29 H 0.97006 * 120.00486 * 0.02562 * 7 5 4 30 30 H 1.09001 * 109.46875 * 299.99539 * 8 7 5 31 31 H 1.08992 * 109.47270 * 59.99892 * 8 7 5 32 32 H 1.09005 * 109.47317 * 299.99365 * 9 8 7 33 33 H 1.09001 * 109.47222 * 60.00023 * 9 8 7 34 34 H 1.09001 * 109.47217 * 59.99847 * 12 10 9 35 35 H 1.09003 * 109.46770 * 179.97438 * 12 10 9 36 36 H 1.09002 * 109.47045 * 299.99638 * 12 10 9 37 37 H 0.96997 * 120.00273 * 24.99906 * 13 10 9 38 38 H 0.97003 * 119.99485 * 180.02562 * 17 16 14 39 39 H 1.08000 * 125.93494 * 180.21944 * 22 4 3 40 40 H 1.09000 * 109.47383 * 275.43127 * 25 24 3 41 41 H 1.09005 * 109.47215 * 35.42959 * 25 24 3 42 42 H 1.08995 * 109.47498 * 155.42979 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2059 0.0000 4 6 2.5099 1.8942 -1.1139 5 6 2.4286 1.4508 -2.5123 6 8 1.9166 0.3806 -2.7824 7 7 2.9210 2.2296 -3.4958 8 6 2.8453 1.7849 -4.8897 9 6 3.4712 2.8451 -5.7980 10 6 3.3927 2.3803 -7.2537 11 1 3.8573 1.3987 -7.3471 12 6 4.1280 3.3800 -8.1485 13 7 1.9890 2.2973 -7.6648 14 6 1.6220 1.4568 -8.6816 15 1 2.3673 0.8548 -9.1802 16 6 0.2920 1.3785 -9.0715 17 7 -0.0607 0.5710 -10.0492 18 14 -0.9969 2.4203 -8.2096 19 1 -1.1272 3.7244 -8.9078 20 1 -2.3023 1.7129 -8.2341 21 1 -0.5856 2.6516 -6.8015 22 6 3.0720 3.1053 -0.6466 23 7 2.9537 3.1333 0.6509 24 7 2.3202 1.9619 1.0795 25 6 2.0060 1.6180 2.4684 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5135 0.8902 28 1 -0.3634 0.5142 -0.8897 29 1 3.3295 3.0827 -3.2805 30 1 3.3872 0.8457 -5.0012 31 1 1.8018 1.6376 -5.1679 32 1 2.9297 3.7846 -5.6865 33 1 4.5147 2.9919 -5.5196 34 1 5.1723 3.4417 -7.8426 35 1 4.0724 3.0486 -9.1854 36 1 3.6633 4.3615 -8.0550 37 1 1.3196 2.8377 -7.2167 38 1 -0.9900 0.5166 -10.3219 39 1 3.5214 3.8732 -1.2587 40 1 0.9803 1.9112 2.6922 41 1 2.1155 0.5427 2.6102 42 1 2.6882 2.1439 3.1362 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274822795.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:21 Heat of formation + Delta-G solvation = -9.498852 kcal Electronic energy + Delta-G solvation = -23769.267465 eV Core-core repulsion = 20172.110391 eV Total energy + Delta-G solvation = -3597.157073 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.64947 -40.25495 -39.24669 -38.19799 -35.79631 -34.49806 -34.06199 -31.75013 -31.06497 -29.78098 -28.27772 -27.71054 -25.61877 -24.45551 -23.26213 -22.03765 -21.75108 -21.13614 -19.74722 -19.28394 -17.90768 -17.54529 -17.09908 -16.97197 -16.36937 -16.20516 -15.78885 -15.69235 -15.63790 -15.12973 -14.77114 -14.68200 -14.54931 -14.24433 -13.68771 -13.62099 -13.58635 -13.51178 -12.96148 -12.88360 -12.57539 -12.48914 -12.24920 -12.18089 -12.01912 -11.75576 -11.57670 -11.35633 -10.99803 -10.89972 -10.52918 -10.15940 -9.69710 -9.26426 -7.99242 -5.30501 0.08946 1.05879 1.05975 1.36728 1.41054 1.47254 2.23404 2.33069 2.50361 2.58192 3.33136 3.37237 3.66911 3.87853 3.99263 4.03488 4.11660 4.19927 4.25967 4.30021 4.32962 4.36307 4.57048 4.61374 4.63366 4.69548 4.81161 4.90207 5.01951 5.06131 5.12573 5.23459 5.33268 5.41048 5.51565 5.63002 5.83144 6.21973 6.25821 6.35924 6.68115 7.13035 7.35460 7.90652 8.08020 9.23057 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.018963 B = 0.003443 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.242830 B = 8130.840970 C = 9000.929733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.316 6.316 3 C 0.310 3.690 4 C -0.320 4.320 5 C 0.584 3.416 6 O -0.590 6.590 7 N -0.707 5.707 8 C 0.131 3.869 9 C -0.118 4.118 10 C 0.167 3.833 11 H 0.040 0.960 12 C -0.154 4.154 13 N -0.751 5.751 14 C -0.219 4.219 15 H 0.056 0.944 16 C -0.069 4.069 17 N -0.988 5.988 18 Si 0.952 3.048 19 H -0.275 1.275 20 H -0.302 1.302 21 H -0.256 1.256 22 C 0.105 3.895 23 N -0.291 5.291 24 N -0.367 5.367 25 C 0.082 3.918 26 H 0.123 0.877 27 H 0.075 0.925 28 H 0.038 0.962 29 H 0.417 0.583 30 H 0.049 0.951 31 H 0.038 0.962 32 H 0.084 0.916 33 H 0.110 0.890 34 H 0.078 0.922 35 H 0.027 0.973 36 H 0.055 0.945 37 H 0.364 0.636 38 H 0.255 0.745 39 H 0.233 0.767 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.896 8.684 28.914 30.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.225 6.225 3 C 0.135 3.865 4 C -0.336 4.336 5 C 0.373 3.627 6 O -0.471 6.471 7 N -0.360 5.360 8 C 0.007 3.993 9 C -0.156 4.156 10 C 0.059 3.941 11 H 0.059 0.941 12 C -0.214 4.214 13 N -0.395 5.395 14 C -0.351 4.351 15 H 0.074 0.926 16 C -0.260 4.260 17 N -0.640 5.640 18 Si 0.780 3.220 19 H -0.201 1.201 20 H -0.229 1.229 21 H -0.181 1.181 22 C -0.082 4.082 23 N -0.114 5.114 24 N -0.156 5.156 25 C -0.057 4.057 26 H 0.141 0.859 27 H 0.094 0.906 28 H 0.057 0.943 29 H 0.254 0.746 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.102 0.898 33 H 0.129 0.871 34 H 0.097 0.903 35 H 0.046 0.954 36 H 0.074 0.926 37 H 0.197 0.803 38 H 0.064 0.936 39 H 0.250 0.750 40 H 0.115 0.885 41 H 0.120 0.880 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.818 8.152 29.758 31.598 hybrid contribution -1.380 -0.141 -0.861 1.633 sum 5.437 8.011 28.897 30.476 Atomic orbital electron populations 1.23310 0.75108 1.05837 1.01501 1.85979 1.22927 1.20637 1.92998 1.19554 0.95013 0.84660 0.87269 1.20046 1.20683 1.00589 0.92304 1.17410 0.77298 0.83376 0.84610 1.90809 1.47050 1.24570 1.84665 1.45567 1.61332 1.23288 1.05768 1.21147 1.00393 0.98008 0.79757 1.21971 1.03148 0.97885 0.92622 1.20439 0.83699 0.97357 0.92557 0.94141 1.22243 1.00373 0.99484 0.99296 1.42860 1.05324 1.50375 1.40943 1.19041 0.92912 1.15072 1.08050 0.92609 1.25468 0.99324 1.01440 0.99735 1.69890 1.17181 1.43598 1.33295 0.85441 0.78585 0.78552 0.79392 1.20088 1.22886 1.18054 1.24448 0.96024 0.95859 0.91844 1.77195 1.18922 1.01457 1.13812 1.49264 1.44693 1.13669 1.07935 1.22389 1.04121 1.03670 0.75535 0.85884 0.90596 0.94263 0.74579 0.93288 0.94313 0.89767 0.87131 0.90349 0.95368 0.92568 0.80288 0.93589 0.75048 0.88465 0.88049 0.86833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 11.13 113.37 1.26 1.93 16 2 O -0.32 -7.91 9.83 -79.39 -0.78 -8.69 16 3 C 0.31 7.47 6.99 84.44 0.59 8.06 16 4 C -0.32 -7.96 6.15 -20.03 -0.12 -8.08 16 5 C 0.58 18.16 7.80 86.52 0.67 18.83 16 6 O -0.59 -24.39 16.38 2.70 0.04 -24.35 16 7 N -0.71 -17.56 5.55 -466.85 -2.59 -20.15 16 8 C 0.13 4.08 5.56 86.38 0.48 4.56 16 9 C -0.12 -2.96 4.87 30.60 0.15 -2.81 16 10 C 0.17 5.89 2.89 44.99 0.13 6.02 16 11 H 0.04 1.56 8.08 -2.38 -0.02 1.55 16 12 C -0.15 -4.75 9.49 71.98 0.68 -4.07 16 13 N -0.75 -34.46 4.38 -322.94 -1.41 -35.87 16 14 C -0.22 -12.66 10.41 84.03 0.87 -11.79 16 15 H 0.06 3.54 8.06 -2.91 -0.02 3.51 16 16 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16 17 N -0.99 -65.28 13.97 21.65 0.30 -64.98 16 18 Si 0.95 47.12 27.74 68.60 1.90 49.02 16 19 H -0.27 -13.03 7.11 99.48 0.71 -12.33 16 20 H -0.30 -15.32 7.11 99.48 0.71 -14.62 16 21 H -0.26 -11.59 6.52 99.48 0.65 -10.94 16 22 C 0.10 1.82 11.50 85.71 0.99 2.80 16 23 N -0.29 -5.53 12.48 -56.23 -0.70 -6.23 16 24 N -0.37 -6.73 3.99 -479.81 -1.91 -8.65 16 25 C 0.08 0.71 11.38 127.77 1.45 2.17 16 26 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.42 6.39 7.42 -92.70 -0.69 5.70 16 30 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.04 1.53 7.75 -2.39 -0.02 1.51 16 32 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.06 1.61 8.14 -2.39 -0.02 1.60 16 37 H 0.36 16.13 5.66 -92.71 -0.52 15.61 16 38 H 0.26 16.12 8.31 -92.71 -0.77 15.35 16 39 H 0.23 1.80 7.50 -2.91 -0.02 1.78 16 40 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.10 0.69 8.14 -2.38 -0.02 0.68 16 42 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -86.00 359.18 2.24 -83.76 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: -0.24 Total: 22.23 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 7.63 Total: 13.91 kcal Atomic # 7 Polarization: -129.56 SS G_CDS: -6.32 Total: -135.87 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -0.74 Total: -33.04 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 1.90 Total: 49.02 kcal Total: -86.00 2.24 -83.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274822795.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.260 kcal (2) G-P(sol) polarization free energy of solvation -85.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds