Wall clock time and date at job start Tue Mar 31 2020 03:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46847 * 110.99957 * 2 1 4 4 C 1.50138 * 110.27607 * 287.54174 * 3 2 1 5 5 C 1.29824 * 123.28394 * 342.94601 * 4 3 2 6 6 C 1.50699 * 118.55067 * 180.65798 * 5 4 3 7 7 N 1.46501 * 109.47247 * 94.73162 * 6 5 4 8 8 C 1.34773 * 119.99760 * 179.97438 * 7 6 5 9 9 O 1.21593 * 120.00535 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99892 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00343 * 180.02562 * 10 8 7 12 12 C 1.50695 * 109.47524 * 180.02562 * 11 10 8 13 13 O 1.21295 * 119.99647 * 359.97438 * 12 11 10 14 14 N 1.34776 * 120.00473 * 180.02562 * 12 11 10 15 15 C 1.37097 * 120.00459 * 179.97438 * 14 12 11 16 16 H 1.07997 * 119.99450 * 359.97438 * 15 14 12 17 17 C 1.38944 * 120.00154 * 180.02562 * 15 14 12 18 18 N 1.31416 * 120.00243 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00163 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47365 * 89.99455 * 19 17 15 21 21 H 1.48499 * 109.47193 * 209.99697 * 19 17 15 22 22 H 1.48503 * 109.47041 * 329.99533 * 19 17 15 23 23 C 1.50306 * 122.89234 * 0.37239 * 5 4 3 24 24 C 1.47245 * 111.00146 * 237.07446 * 2 1 3 25 25 H 1.09008 * 109.46949 * 182.92859 * 1 2 3 26 26 H 1.09002 * 109.47556 * 302.92631 * 1 2 3 27 27 H 1.08999 * 109.47399 * 62.93238 * 1 2 3 28 28 H 1.08999 * 109.33341 * 47.78794 * 3 2 1 29 29 H 1.09000 * 109.33955 * 167.45407 * 3 2 1 30 30 H 1.08000 * 118.35721 * 162.96624 * 4 3 2 31 31 H 1.09009 * 109.47121 * 214.73129 * 6 5 4 32 32 H 1.09000 * 109.47246 * 334.72694 * 6 5 4 33 33 H 0.96997 * 120.00013 * 359.97438 * 7 6 5 34 34 H 0.97005 * 120.00260 * 0.02562 * 10 8 7 35 35 H 1.09006 * 109.46960 * 300.00488 * 11 10 8 36 36 H 1.08998 * 109.47184 * 59.99964 * 11 10 8 37 37 H 0.97000 * 119.99778 * 359.97438 * 14 12 11 38 38 H 0.96990 * 120.00258 * 180.02562 * 18 17 15 39 39 H 1.09006 * 109.42717 * 103.57879 * 23 5 4 40 40 H 1.08999 * 109.42986 * 223.47543 * 23 5 4 41 41 H 1.09001 * 109.63105 * 294.88217 * 24 2 1 42 42 H 1.08997 * 109.80426 * 174.37462 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 1.7853 2.0088 -1.3429 5 6 1.5191 1.3329 -2.4189 6 6 1.3432 2.0818 -3.7147 7 7 2.6138 2.1015 -4.4438 8 6 2.6956 2.7197 -5.6385 9 8 1.7148 3.2608 -6.1116 10 7 3.8646 2.7383 -6.3090 11 6 3.9538 3.4109 -7.6075 12 6 5.3572 3.2869 -8.1422 13 8 6.2002 2.6954 -7.5013 14 7 5.6760 3.8342 -9.3318 15 6 6.9529 3.7219 -9.8180 16 1 7.7035 3.1953 -9.2474 17 6 7.2817 4.2866 -11.0442 18 7 6.3684 4.9279 -11.7383 19 14 9.0217 4.1342 -11.7063 20 1 9.1337 2.9003 -12.5249 21 1 9.3365 5.3167 -12.5477 22 1 9.9784 4.0646 -10.5726 23 6 1.3849 -0.1641 -2.4302 24 6 1.9966 -0.7472 -1.1538 25 1 -0.3633 -1.0264 0.0525 26 1 -0.3634 0.5586 0.8626 27 1 -0.3634 0.4676 -0.9151 28 1 1.4793 1.9555 0.7618 29 1 3.0618 1.3482 0.2234 30 1 1.8599 3.0836 -1.4175 31 1 0.5843 1.5864 -4.3205 32 1 1.0294 3.1041 -3.5039 33 1 3.3961 1.6695 -4.0666 34 1 4.6470 2.3064 -5.9319 35 1 3.2570 2.9468 -8.3057 36 1 3.7014 4.4646 -7.4890 37 1 5.0019 4.3076 -9.8441 38 1 6.5978 5.3218 -12.5944 39 1 0.3298 -0.4331 -2.4823 40 1 1.9054 -0.5683 -3.2984 41 1 1.7246 -1.7989 -1.0645 42 1 3.0818 -0.6514 -1.1909 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346658071.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:35 Heat of formation + Delta-G solvation = -45.112863 kcal Electronic energy + Delta-G solvation = -23062.698302 eV Core-core repulsion = 19463.996890 eV Total energy + Delta-G solvation = -3598.701413 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.29638 -39.58904 -38.19791 -35.59300 -34.39475 -33.64901 -32.65079 -31.37044 -31.34246 -28.61740 -27.44960 -25.61681 -24.34197 -23.88272 -22.07089 -20.73928 -19.58854 -18.65489 -18.08706 -17.70755 -16.58133 -16.12598 -15.77627 -15.55757 -15.39333 -14.91511 -14.72290 -14.61545 -14.36892 -14.08835 -13.87671 -13.49880 -13.47922 -13.14057 -12.71538 -12.49040 -12.23625 -12.18087 -11.88552 -11.86000 -11.63207 -11.58439 -11.12744 -11.06807 -10.46236 -10.32573 -10.13977 -9.63731 -9.33166 -9.18502 -8.72437 -8.62700 -8.60665 -8.10058 -6.51407 -3.93505 1.57819 2.98119 3.11538 3.22011 3.27580 3.39067 3.58407 3.75117 4.09431 4.33619 4.35709 4.49775 4.61149 4.73938 4.86421 4.90291 5.06592 5.12207 5.17198 5.19987 5.32314 5.36322 5.44485 5.49570 5.50424 5.58204 5.64851 5.91726 6.00595 6.05061 6.08259 6.43066 6.48635 6.57114 6.66760 6.74918 7.08971 7.45962 7.92393 8.22813 8.45189 8.78382 9.04604 9.39521 9.87400 10.65495 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.038900 B = 0.002229 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.624532 B =12557.001707 C =12940.822469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.534 5.534 3 C 0.078 3.922 4 C -0.164 4.164 5 C -0.138 4.138 6 C 0.177 3.823 7 N -0.745 5.745 8 C 0.704 3.296 9 O -0.599 6.599 10 N -0.724 5.724 11 C 0.129 3.871 12 C 0.429 3.571 13 O -0.598 6.598 14 N -0.549 5.549 15 C -0.305 4.305 16 H 0.105 0.895 17 C 0.025 3.975 18 N -0.895 5.895 19 Si 0.934 3.066 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.269 1.269 23 C -0.121 4.121 24 C 0.051 3.949 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.036 0.964 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.113 0.887 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.397 0.603 34 H 0.407 0.593 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.396 0.604 38 H 0.274 0.726 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.165 -7.976 20.352 24.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.255 5.255 3 C -0.050 4.050 4 C -0.185 4.185 5 C -0.139 4.139 6 C 0.053 3.947 7 N -0.401 5.401 8 C 0.404 3.596 9 O -0.478 6.478 10 N -0.381 5.381 11 C 0.000 4.000 12 C 0.214 3.786 13 O -0.485 6.485 14 N -0.184 5.184 15 C -0.434 4.434 16 H 0.123 0.877 17 C -0.178 4.178 18 N -0.535 5.535 19 Si 0.760 3.240 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.193 1.193 23 C -0.159 4.159 24 C -0.078 4.078 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.055 0.945 28 H 0.104 0.896 29 H 0.109 0.891 30 H 0.131 0.869 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.230 0.770 34 H 0.244 0.756 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.230 0.770 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.330 -7.992 20.553 24.793 hybrid contribution 0.813 0.405 -1.278 1.567 sum -10.518 -7.586 19.276 23.232 Atomic orbital electron populations 1.22464 0.87460 1.02188 1.01112 1.62738 1.08380 1.13231 1.41179 1.21171 1.01490 0.88295 0.94072 1.22961 0.99174 1.00716 0.95654 1.21014 1.02563 0.95611 0.94671 1.20089 0.85673 0.99538 0.89381 1.45054 1.13410 1.61140 1.20530 1.15865 0.83643 0.79623 0.80496 1.90908 1.36287 1.51290 1.69301 1.44772 1.11604 1.60155 1.21603 1.20783 0.96800 0.98154 0.84247 1.19764 0.89126 0.85656 0.84022 1.90490 1.50541 1.47878 1.59584 1.41790 1.12304 1.47610 1.16706 1.19723 0.87343 1.33705 1.02646 0.87693 1.25332 1.00000 0.96195 0.96256 1.69614 1.34066 1.35345 1.14445 0.85807 0.81529 0.77788 0.78859 1.20269 1.20803 1.19332 1.21060 1.02363 0.92257 1.00270 1.22293 1.00141 0.98077 0.87242 0.91421 0.91494 0.94530 0.89635 0.89116 0.86883 0.91293 0.91343 0.76958 0.75608 0.90026 0.90029 0.77006 0.91589 0.90337 0.90005 0.90077 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 8.91 60.06 0.53 0.64 16 2 N -0.53 -3.87 5.29 -244.42 -1.29 -5.16 16 3 C 0.08 0.52 5.94 -5.28 -0.03 0.49 16 4 C -0.16 -1.25 9.06 -35.97 -0.33 -1.58 16 5 C -0.14 -1.14 4.63 -100.93 -0.47 -1.60 16 6 C 0.18 1.90 5.72 -5.19 -0.03 1.87 16 7 N -0.74 -9.09 5.55 -66.41 -0.37 -9.46 16 8 C 0.70 11.61 8.57 -86.92 -0.74 10.87 16 9 O -0.60 -11.92 16.34 5.28 0.09 -11.84 16 10 N -0.72 -12.34 5.53 -66.41 -0.37 -12.71 16 11 C 0.13 2.43 6.15 -5.19 -0.03 2.39 16 12 C 0.43 9.90 7.85 -10.99 -0.09 9.81 16 13 O -0.60 -15.35 15.24 5.54 0.08 -15.26 16 14 N -0.55 -13.70 5.29 -10.97 -0.06 -13.75 16 15 C -0.30 -8.30 9.68 -14.94 -0.14 -8.45 16 16 H 0.11 2.97 7.16 -52.49 -0.38 2.60 16 17 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 18 N -0.89 -23.95 13.05 55.50 0.72 -23.23 16 19 Si 0.93 20.57 29.55 -169.99 -5.02 15.54 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 22 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 23 C -0.12 -0.88 5.24 -28.03 -0.15 -1.02 16 24 C 0.05 0.34 6.06 -3.59 -0.02 0.32 16 25 H 0.07 0.39 8.14 -51.92 -0.42 -0.04 16 26 H 0.07 0.39 8.05 -51.93 -0.42 -0.03 16 27 H 0.04 0.25 5.68 -51.93 -0.29 -0.04 16 28 H 0.09 0.50 7.98 -51.93 -0.41 0.09 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.11 0.87 7.81 -52.49 -0.41 0.46 16 31 H 0.07 0.79 8.13 -51.92 -0.42 0.37 16 32 H 0.07 0.79 7.85 -51.93 -0.41 0.38 16 33 H 0.40 4.06 8.48 -40.82 -0.35 3.71 16 34 H 0.41 6.72 7.45 -40.82 -0.30 6.41 16 35 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.40 9.51 7.90 -40.82 -0.32 9.18 16 38 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 39 H 0.08 0.55 6.94 -51.93 -0.36 0.19 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.55 8.09 -51.93 -0.42 0.13 16 LS Contribution 349.14 15.07 5.26 5.26 Total: -1.00 -31.87 349.14 -8.71 -40.58 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: -6.17 Total: 15.72 kcal Atomic # 6 Polarization: 15.89 SS G_CDS: -1.59 Total: 14.30 kcal Atomic # 7 Polarization: -62.94 SS G_CDS: -1.36 Total: -64.31 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: 0.17 Total: -27.10 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.87 -8.71 -40.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346658071.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.532 kcal (2) G-P(sol) polarization free energy of solvation -31.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds