Wall clock time and date at job start Tue Mar 31 2020 03:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46847 * 110.99957 * 2 1 4 4 C 1.50138 * 110.27607 * 287.54174 * 3 2 1 5 5 C 1.29824 * 123.28394 * 342.94601 * 4 3 2 6 6 C 1.50699 * 118.55067 * 180.65798 * 5 4 3 7 7 N 1.46501 * 109.47247 * 94.73162 * 6 5 4 8 8 C 1.34773 * 119.99760 * 179.97438 * 7 6 5 9 9 O 1.21593 * 120.00535 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99892 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00343 * 180.02562 * 10 8 7 12 12 C 1.50695 * 109.47524 * 180.02562 * 11 10 8 13 13 O 1.21295 * 119.99647 * 359.97438 * 12 11 10 14 14 N 1.34776 * 120.00473 * 180.02562 * 12 11 10 15 15 C 1.37097 * 120.00459 * 179.97438 * 14 12 11 16 16 H 1.07997 * 119.99450 * 359.97438 * 15 14 12 17 17 C 1.38944 * 120.00154 * 180.02562 * 15 14 12 18 18 N 1.31416 * 120.00243 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00163 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47365 * 89.99455 * 19 17 15 21 21 H 1.48499 * 109.47193 * 209.99697 * 19 17 15 22 22 H 1.48503 * 109.47041 * 329.99533 * 19 17 15 23 23 C 1.50306 * 122.89234 * 0.37239 * 5 4 3 24 24 C 1.47245 * 111.00146 * 237.07446 * 2 1 3 25 25 H 1.09008 * 109.46949 * 182.92859 * 1 2 3 26 26 H 1.09002 * 109.47556 * 302.92631 * 1 2 3 27 27 H 1.08999 * 109.47399 * 62.93238 * 1 2 3 28 28 H 1.08999 * 109.33341 * 47.78794 * 3 2 1 29 29 H 1.09000 * 109.33955 * 167.45407 * 3 2 1 30 30 H 1.08000 * 118.35721 * 162.96624 * 4 3 2 31 31 H 1.09009 * 109.47121 * 214.73129 * 6 5 4 32 32 H 1.09000 * 109.47246 * 334.72694 * 6 5 4 33 33 H 0.96997 * 120.00013 * 359.97438 * 7 6 5 34 34 H 0.97005 * 120.00260 * 0.02562 * 10 8 7 35 35 H 1.09006 * 109.46960 * 300.00488 * 11 10 8 36 36 H 1.08998 * 109.47184 * 59.99964 * 11 10 8 37 37 H 0.97000 * 119.99778 * 359.97438 * 14 12 11 38 38 H 0.96990 * 120.00258 * 180.02562 * 18 17 15 39 39 H 1.09006 * 109.42717 * 103.57879 * 23 5 4 40 40 H 1.08999 * 109.42986 * 223.47543 * 23 5 4 41 41 H 1.09001 * 109.63105 * 294.88217 * 24 2 1 42 42 H 1.08997 * 109.80426 * 174.37462 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 1.7853 2.0088 -1.3429 5 6 1.5191 1.3329 -2.4189 6 6 1.3432 2.0818 -3.7147 7 7 2.6138 2.1015 -4.4438 8 6 2.6956 2.7197 -5.6385 9 8 1.7148 3.2608 -6.1116 10 7 3.8646 2.7383 -6.3090 11 6 3.9538 3.4109 -7.6075 12 6 5.3572 3.2869 -8.1422 13 8 6.2002 2.6954 -7.5013 14 7 5.6760 3.8342 -9.3318 15 6 6.9529 3.7219 -9.8180 16 1 7.7035 3.1953 -9.2474 17 6 7.2817 4.2866 -11.0442 18 7 6.3684 4.9279 -11.7383 19 14 9.0217 4.1342 -11.7063 20 1 9.1337 2.9003 -12.5249 21 1 9.3365 5.3167 -12.5477 22 1 9.9784 4.0646 -10.5726 23 6 1.3849 -0.1641 -2.4302 24 6 1.9966 -0.7472 -1.1538 25 1 -0.3633 -1.0264 0.0525 26 1 -0.3634 0.5586 0.8626 27 1 -0.3634 0.4676 -0.9151 28 1 1.4793 1.9555 0.7618 29 1 3.0618 1.3482 0.2234 30 1 1.8599 3.0836 -1.4175 31 1 0.5843 1.5864 -4.3205 32 1 1.0294 3.1041 -3.5039 33 1 3.3961 1.6695 -4.0666 34 1 4.6470 2.3064 -5.9319 35 1 3.2570 2.9468 -8.3057 36 1 3.7014 4.4646 -7.4890 37 1 5.0019 4.3076 -9.8441 38 1 6.5978 5.3218 -12.5944 39 1 0.3298 -0.4331 -2.4823 40 1 1.9054 -0.5683 -3.2984 41 1 1.7246 -1.7989 -1.0645 42 1 3.0818 -0.6514 -1.1909 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346658071.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:35 Heat of formation + Delta-G solvation = -70.768606 kcal Electronic energy + Delta-G solvation = -23063.810819 eV Core-core repulsion = 19463.996890 eV Total energy + Delta-G solvation = -3599.813929 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.33956 -40.57774 -39.95671 -36.59323 -36.18537 -35.28587 -33.57358 -33.32166 -31.90063 -29.69688 -28.55889 -26.79017 -25.86074 -24.52650 -22.70346 -22.03203 -21.37597 -20.14950 -19.77582 -18.46294 -17.69327 -17.43857 -17.01244 -16.72923 -16.49222 -16.27419 -15.97553 -15.84902 -15.50639 -15.27389 -15.13925 -14.94792 -14.31574 -13.97598 -13.88446 -13.61423 -13.54539 -13.28910 -13.09601 -12.90175 -12.72003 -12.47882 -12.45934 -12.15438 -12.12815 -11.64536 -11.57307 -11.54434 -10.56564 -10.47828 -10.10850 -9.98753 -9.85630 -9.27228 -8.51208 -6.01557 0.85953 1.36374 1.42764 1.55332 1.78768 1.89058 2.08025 2.29089 3.04356 3.07052 3.15901 3.36320 3.66529 3.72003 4.05956 4.18827 4.20286 4.34448 4.41489 4.44398 4.48353 4.52133 4.58218 4.66264 4.73162 4.81431 4.92063 4.95423 5.06320 5.10671 5.28445 5.36994 5.38588 5.44616 5.82434 5.89978 5.93531 6.05241 6.13659 6.47596 6.99036 7.03077 7.41590 7.49810 7.93852 8.65683 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.038900 B = 0.002229 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.624532 B =12557.001707 C =12940.822469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.542 5.542 3 C 0.077 3.923 4 C -0.154 4.154 5 C -0.143 4.143 6 C 0.179 3.821 7 N -0.727 5.727 8 C 0.704 3.296 9 O -0.633 6.633 10 N -0.723 5.723 11 C 0.142 3.858 12 C 0.434 3.566 13 O -0.624 6.624 14 N -0.559 5.559 15 C -0.337 4.337 16 H 0.087 0.913 17 C -0.012 4.012 18 N -0.916 5.916 19 Si 0.998 3.002 20 H -0.270 1.270 21 H -0.272 1.272 22 H -0.270 1.270 23 C -0.116 4.116 24 C 0.052 3.948 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.030 0.970 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.113 0.887 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.409 0.591 34 H 0.410 0.590 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.399 0.601 38 H 0.280 0.720 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.041 -8.420 21.271 25.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.264 5.264 3 C -0.050 4.050 4 C -0.175 4.175 5 C -0.144 4.144 6 C 0.056 3.944 7 N -0.383 5.383 8 C 0.404 3.596 9 O -0.515 6.515 10 N -0.381 5.381 11 C 0.013 3.987 12 C 0.221 3.779 13 O -0.512 6.512 14 N -0.195 5.195 15 C -0.466 4.466 16 H 0.105 0.895 17 C -0.213 4.213 18 N -0.556 5.556 19 Si 0.821 3.179 20 H -0.195 1.195 21 H -0.197 1.197 22 H -0.194 1.194 23 C -0.155 4.155 24 C -0.076 4.076 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.048 0.952 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.131 0.869 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.244 0.756 34 H 0.248 0.752 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.233 0.767 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.107 0.893 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.218 -8.455 21.512 25.693 hybrid contribution 0.719 0.535 -1.468 1.720 sum -10.500 -7.920 20.045 23.974 Atomic orbital electron populations 1.22483 0.86984 1.02648 1.01044 1.62758 1.08876 1.13407 1.41309 1.21241 1.01973 0.88221 0.93608 1.23087 0.97648 1.00758 0.95966 1.20858 1.03963 0.96039 0.93534 1.20138 0.84618 0.99460 0.90224 1.44986 1.14554 1.59712 1.19052 1.15963 0.82771 0.79607 0.81281 1.90885 1.37283 1.52922 1.70417 1.44685 1.12063 1.60238 1.21105 1.20586 0.93779 0.99116 0.85216 1.20400 0.90432 0.83993 0.83092 1.90467 1.51986 1.48631 1.60118 1.41839 1.11882 1.48313 1.17447 1.19735 0.88119 1.35166 1.03577 0.89534 1.26150 1.03837 0.95335 0.95939 1.69680 1.35675 1.35457 1.14789 0.84853 0.76717 0.78205 0.78116 1.19536 1.19680 1.19425 1.21022 1.02515 0.91414 1.00506 1.22304 1.00052 0.98456 0.86770 0.90843 0.90906 0.95158 0.88545 0.88592 0.86896 0.92057 0.92085 0.75561 0.75212 0.89059 0.89074 0.76687 0.91065 0.90181 0.90285 0.89285 0.90279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 8.91 127.69 1.14 1.32 16 2 N -0.54 -6.84 5.29 -927.19 -4.90 -11.74 16 3 C 0.08 0.89 5.94 85.39 0.51 1.40 16 4 C -0.15 -2.10 9.06 26.68 0.24 -1.86 16 5 C -0.14 -2.18 4.63 -15.40 -0.07 -2.25 16 6 C 0.18 3.69 5.72 85.63 0.49 4.18 16 7 N -0.73 -17.00 5.55 -482.28 -2.68 -19.68 16 8 C 0.70 22.67 8.57 179.06 1.53 24.21 16 9 O -0.63 -24.91 16.34 -4.01 -0.07 -24.98 16 10 N -0.72 -24.10 5.53 -482.29 -2.67 -26.77 16 11 C 0.14 5.26 6.15 85.63 0.53 5.79 16 12 C 0.43 20.08 7.85 87.66 0.69 20.77 16 13 O -0.62 -32.16 15.24 -3.08 -0.05 -32.21 16 14 N -0.56 -28.17 5.29 -306.99 -1.62 -29.79 16 15 C -0.34 -18.55 9.68 84.04 0.81 -17.73 16 16 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 17 C -0.01 -0.63 5.50 84.92 0.47 -0.16 16 18 N -0.92 -48.73 13.05 21.66 0.28 -48.45 16 19 Si 1.00 41.71 29.55 68.60 2.03 43.74 16 20 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 21 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 22 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 23 C -0.12 -1.52 5.24 29.75 0.16 -1.37 16 24 C 0.05 0.62 6.06 86.26 0.52 1.14 16 25 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 26 H 0.07 0.71 8.05 -2.39 -0.02 0.69 16 27 H 0.03 0.37 5.68 -2.39 -0.01 0.36 16 28 H 0.10 0.92 7.98 -2.39 -0.02 0.90 16 29 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.11 1.56 7.81 -2.91 -0.02 1.54 16 31 H 0.06 1.38 8.13 -2.38 -0.02 1.36 16 32 H 0.06 1.37 7.85 -2.39 -0.02 1.35 16 33 H 0.41 7.78 8.48 -92.71 -0.79 6.99 16 34 H 0.41 13.24 7.45 -92.70 -0.69 12.55 16 35 H 0.09 3.26 8.14 -2.38 -0.02 3.24 16 36 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 37 H 0.40 19.33 7.90 -92.71 -0.73 18.60 16 38 H 0.28 13.92 8.31 -92.72 -0.77 13.15 16 39 H 0.08 1.03 6.94 -2.38 -0.02 1.01 16 40 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.08 0.95 8.09 -2.39 -0.02 0.93 16 Total: -1.00 -66.96 349.14 -3.81 -70.76 By element: Atomic # 1 Polarization: 44.82 SS G_CDS: -1.14 Total: 43.67 kcal Atomic # 6 Polarization: 28.43 SS G_CDS: 7.01 Total: 35.44 kcal Atomic # 7 Polarization: -124.84 SS G_CDS: -11.59 Total: -136.43 kcal Atomic # 8 Polarization: -57.07 SS G_CDS: -0.11 Total: -57.19 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -66.96 -3.81 -70.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346658071.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.004 kcal (2) G-P(sol) polarization free energy of solvation -66.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds