Wall clock time and date at job start Tue Mar 31 2020 03:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86810 * 119.99721 * 2 1 4 4 H 1.48503 * 109.47019 * 240.00505 * 3 2 1 5 5 H 1.48500 * 109.46814 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46830 * 119.99909 * 3 2 1 7 7 C 1.38811 * 120.00431 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00000 * 163.07080 * 7 2 1 9 9 N 1.36933 * 119.99950 * 343.07690 * 7 2 1 10 10 C 1.46926 * 120.63430 * 151.85619 * 9 7 2 11 11 C 1.53190 * 108.77700 * 126.36289 * 10 9 7 12 12 C 1.53040 * 109.31164 * 54.63692 * 11 10 9 13 13 C 1.53037 * 109.53724 * 298.63487 * 12 11 10 14 14 H 1.08998 * 109.52572 * 301.39394 * 13 12 11 15 15 N 1.46510 * 109.49682 * 181.31441 * 13 12 11 16 16 C 1.34769 * 119.99811 * 155.16286 * 15 13 12 17 17 O 1.21276 * 120.00307 * 359.97438 * 16 15 13 18 18 C 1.50706 * 119.99779 * 179.97438 * 16 15 13 19 19 C 1.53000 * 109.47223 * 179.97438 * 18 16 15 20 20 C 1.52998 * 109.47034 * 180.02562 * 19 18 16 21 21 H 1.08998 * 110.44022 * 305.70413 * 20 19 18 22 22 C 1.54813 * 110.48394 * 183.15873 * 20 19 18 23 23 C 1.55228 * 101.98593 * 220.52150 * 22 20 19 24 24 O 1.44382 * 103.56627 * 36.87970 * 23 22 20 25 25 C 1.43739 * 106.97292 * 320.01330 * 24 23 22 26 26 C 1.46930 * 120.62920 * 331.82704 * 9 7 2 27 27 H 0.96992 * 120.00301 * 359.97438 * 1 2 3 28 28 H 1.08992 * 109.58897 * 246.15587 * 10 9 7 29 29 H 1.09006 * 109.58031 * 6.43916 * 10 9 7 30 30 H 1.08996 * 109.49901 * 174.59003 * 11 10 9 31 31 H 1.08999 * 109.50001 * 294.65579 * 11 10 9 32 32 H 1.08997 * 109.46082 * 178.61135 * 12 11 10 33 33 H 1.09009 * 109.45622 * 58.65574 * 12 11 10 34 34 H 0.97002 * 119.99837 * 335.16516 * 15 13 12 35 35 H 1.09011 * 109.46715 * 60.00170 * 18 16 15 36 36 H 1.08998 * 109.47333 * 300.00343 * 18 16 15 37 37 H 1.09000 * 109.47257 * 300.00193 * 19 18 16 38 38 H 1.09000 * 109.46605 * 59.99897 * 19 18 16 39 39 H 1.09004 * 110.91164 * 338.64163 * 22 20 19 40 40 H 1.08994 * 110.90936 * 102.24990 * 22 20 19 41 41 H 1.09007 * 110.51582 * 278.38578 * 23 22 20 42 42 H 1.08997 * 110.78027 * 155.50610 * 23 22 20 43 43 H 1.08995 * 109.88153 * 267.08352 * 25 24 23 44 44 H 1.09005 * 109.99970 * 146.00856 * 25 24 23 45 45 H 1.09001 * 109.58266 * 113.84512 * 26 9 7 46 46 H 1.08996 * 109.70596 * 353.49677 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.1038 1.6966 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2221 -0.2729 9 7 1.3702 -2.3625 0.3441 10 6 1.8145 -3.6528 -0.2004 11 6 2.0688 -4.6174 0.9621 12 6 0.8136 -4.7017 1.8337 13 6 0.4985 -3.3203 2.4122 14 1 1.3478 -2.9682 2.9977 15 7 -0.6849 -3.4084 3.2714 16 6 -0.8704 -2.5082 4.2571 17 8 -0.0576 -1.6255 4.4331 18 6 -2.0880 -2.5984 5.1405 19 6 -2.0563 -1.4669 6.1699 20 6 -3.2921 -1.5589 7.0672 21 1 -4.2001 -1.5733 6.4643 22 6 -3.3245 -0.3778 8.0674 23 6 -3.8054 -1.0716 9.3701 24 8 -3.1600 -2.3624 9.3244 25 6 -3.2179 -2.8124 7.9604 26 6 0.2264 -2.3410 1.2661 27 1 -0.4850 0.8399 0.0004 28 1 1.0410 -4.0606 -0.8511 29 1 2.7337 -3.5122 -0.7691 30 1 2.3060 -5.6060 0.5693 31 1 2.9040 -4.2537 1.5606 32 1 0.9834 -5.4063 2.6478 33 1 -0.0266 -5.0422 1.2283 34 1 -1.3348 -4.1147 3.1309 35 1 -2.0921 -3.5586 5.6566 36 1 -2.9870 -2.5101 4.5305 37 1 -1.1574 -1.5557 6.7799 38 1 -2.0519 -0.5067 5.6541 39 1 -2.3299 0.0485 8.1985 40 1 -4.0338 0.3848 7.7460 41 1 -4.8896 -1.1842 9.3652 42 1 -3.4827 -0.5120 10.2481 43 1 -4.1052 -3.4275 7.8104 44 1 -2.3237 -3.3871 7.7192 45 1 -0.6766 -2.6418 0.7350 46 1 0.0966 -1.3359 1.6673 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481533417.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:59 Heat of formation + Delta-G solvation = -80.400826 kcal Electronic energy + Delta-G solvation = -24563.517597 eV Core-core repulsion = 21066.826327 eV Total energy + Delta-G solvation = -3496.691270 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.89311 -39.22734 -37.31812 -34.56913 -34.02825 -32.64927 -31.10945 -30.02738 -29.26044 -28.13683 -25.25234 -24.63930 -22.73992 -22.16143 -21.61412 -20.39274 -19.83540 -19.18555 -16.97125 -16.80821 -16.72983 -15.92682 -15.52047 -15.26264 -15.08759 -14.68904 -14.03396 -13.77568 -13.62354 -13.46106 -13.30334 -13.01068 -12.75392 -12.36359 -12.29209 -12.11990 -11.90492 -11.73514 -11.53098 -11.09513 -10.99987 -10.89256 -10.72591 -10.68906 -10.65978 -10.46970 -10.25029 -9.97877 -9.92302 -9.85660 -9.50641 -9.27813 -8.49105 -8.40832 -6.63450 -5.73998 -3.17594 3.09666 3.43566 3.49571 3.52354 3.58175 3.73726 4.30673 4.52344 4.56939 4.67612 4.90672 4.94879 5.04736 5.13850 5.23616 5.37449 5.41241 5.43094 5.45036 5.52480 5.55434 5.56411 5.63320 5.66485 5.72805 5.79841 5.87850 6.09576 6.12092 6.15987 6.26777 6.35170 6.43264 6.52698 6.65317 6.71858 6.79044 6.96727 7.00129 7.32293 7.74409 7.84500 7.99141 8.50017 8.72319 9.24900 9.88814 10.43860 11.34006 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.016516 B = 0.003603 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.878637 B = 7769.755016 C = 9098.248921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.007 3.993 3 Si 0.903 3.097 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.257 4.257 8 H 0.065 0.935 9 N -0.589 5.589 10 C 0.142 3.858 11 C -0.131 4.131 12 C -0.115 4.115 13 C 0.116 3.884 14 H 0.080 0.920 15 N -0.723 5.723 16 C 0.507 3.493 17 O -0.534 6.534 18 C -0.142 4.142 19 C -0.095 4.095 20 C -0.123 4.123 21 H 0.084 0.916 22 C -0.152 4.152 23 C 0.045 3.955 24 O -0.381 6.381 25 C 0.048 3.952 26 C 0.168 3.832 27 H 0.254 0.746 28 H 0.018 0.982 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.391 0.609 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.058 0.942 42 H 0.091 0.909 43 H 0.057 0.943 44 H 0.086 0.914 45 H 0.016 0.984 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.931 -8.102 13.298 17.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.192 4.192 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.387 4.387 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.016 3.984 11 C -0.171 4.171 12 C -0.153 4.153 13 C 0.010 3.990 14 H 0.098 0.902 15 N -0.374 5.374 16 C 0.292 3.708 17 O -0.410 6.410 18 C -0.182 4.182 19 C -0.133 4.133 20 C -0.142 4.142 21 H 0.102 0.898 22 C -0.189 4.189 23 C -0.031 4.031 24 O -0.300 6.300 25 C -0.029 4.029 26 C 0.041 3.959 27 H 0.064 0.936 28 H 0.035 0.965 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.224 0.776 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.076 0.924 42 H 0.109 0.891 43 H 0.075 0.925 44 H 0.104 0.896 45 H 0.034 0.966 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.339 -7.409 13.566 17.564 hybrid contribution -0.148 0.553 -0.365 0.679 sum -8.487 -6.856 13.201 17.126 Atomic orbital electron populations 1.70003 1.05346 1.25614 1.53415 1.25032 0.95264 0.98466 1.00431 0.86371 0.78995 0.83315 0.78104 1.20891 1.21622 1.20866 1.19105 0.92554 0.84796 1.42212 0.91690 1.43957 1.36074 1.01754 1.49376 1.20953 0.97724 0.86892 0.92839 1.21999 0.97023 0.99289 0.98788 1.21668 0.98864 0.96131 0.98684 1.21949 0.87256 0.96771 0.92975 0.90155 1.46111 1.26251 1.31573 1.33444 1.20539 0.87557 0.81750 0.80926 1.90742 1.45703 1.33897 1.70646 1.21728 0.97558 1.00992 0.97911 1.21376 0.96854 0.98962 0.96086 1.22617 0.99867 0.94650 0.97075 0.89754 1.23249 1.03041 0.97935 0.94714 1.23590 0.96877 0.84114 0.98528 1.88866 1.79348 1.34857 1.26894 1.23334 1.01900 0.96213 0.81417 1.21067 0.88654 0.98830 0.87334 0.93648 0.96453 0.92638 0.92669 0.92149 0.93178 0.92321 0.77583 0.89436 0.89029 0.90773 0.90469 0.90017 0.90089 0.92372 0.89101 0.92500 0.89558 0.96640 0.88828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.00 11.19 55.49 0.62 -26.38 16 2 C 0.01 0.21 4.92 -17.43 -0.09 0.12 16 3 Si 0.90 22.69 29.59 -169.99 -5.03 17.66 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -7.14 7.11 56.52 0.40 -6.73 16 7 C -0.26 -7.31 9.58 -15.06 -0.14 -7.45 16 8 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 9 N -0.59 -15.14 2.99 -172.32 -0.52 -15.66 16 10 C 0.14 2.98 6.52 -3.71 -0.02 2.96 16 11 C -0.13 -2.24 6.08 -26.61 -0.16 -2.40 16 12 C -0.12 -1.87 5.35 -26.69 -0.14 -2.01 16 13 C 0.12 2.27 2.60 -67.81 -0.18 2.09 16 14 H 0.08 1.81 7.58 -51.93 -0.39 1.42 16 15 N -0.72 -11.54 5.08 -53.69 -0.27 -11.81 16 16 C 0.51 8.53 7.79 -10.99 -0.09 8.45 16 17 O -0.53 -11.75 15.65 5.56 0.09 -11.67 16 18 C -0.14 -1.61 5.54 -27.88 -0.15 -1.77 16 19 C -0.09 -1.12 3.70 -26.73 -0.10 -1.22 16 20 C -0.12 -1.13 3.06 -89.09 -0.27 -1.41 16 21 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 22 C -0.15 -1.33 6.73 -24.60 -0.17 -1.49 16 23 C 0.05 0.39 7.72 38.34 0.30 0.69 16 24 O -0.38 -4.32 11.52 -35.23 -0.41 -4.72 16 25 C 0.05 0.45 6.94 37.73 0.26 0.71 16 26 C 0.17 4.13 4.88 -3.71 -0.02 4.11 16 27 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 34 H 0.39 4.77 8.60 -40.82 -0.35 4.42 16 35 H 0.09 0.77 6.99 -51.92 -0.36 0.41 16 36 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 38 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 39 H 0.08 0.78 7.87 -51.93 -0.41 0.37 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 42 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.09 0.80 6.82 -51.93 -0.35 0.45 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.09 2.71 6.06 -51.93 -0.31 2.40 16 LS Contribution 360.71 15.07 5.44 5.44 Total: -1.00 -34.09 360.71 -9.11 -43.20 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -8.06 Total: 2.56 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -0.97 Total: 1.38 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: -0.17 Total: -53.85 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -0.32 Total: -16.39 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.03 Total: 17.66 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.09 -9.11 -43.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481533417.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.203 kcal (2) G-P(sol) polarization free energy of solvation -34.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds