Wall clock time and date at job start Tue Mar 31 2020 03:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86810 * 119.99721 * 2 1 4 4 H 1.48503 * 109.47019 * 240.00505 * 3 2 1 5 5 H 1.48500 * 109.46814 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46830 * 119.99909 * 3 2 1 7 7 C 1.38811 * 120.00431 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00000 * 163.07080 * 7 2 1 9 9 N 1.36933 * 119.99950 * 343.07690 * 7 2 1 10 10 C 1.46926 * 120.63430 * 151.85619 * 9 7 2 11 11 C 1.53190 * 108.77700 * 126.36289 * 10 9 7 12 12 C 1.53040 * 109.31164 * 54.63692 * 11 10 9 13 13 C 1.53037 * 109.53724 * 298.63487 * 12 11 10 14 14 H 1.08998 * 109.52572 * 301.39394 * 13 12 11 15 15 N 1.46510 * 109.49682 * 181.31441 * 13 12 11 16 16 C 1.34769 * 119.99811 * 155.16286 * 15 13 12 17 17 O 1.21276 * 120.00307 * 359.97438 * 16 15 13 18 18 C 1.50706 * 119.99779 * 179.97438 * 16 15 13 19 19 C 1.53000 * 109.47223 * 179.97438 * 18 16 15 20 20 C 1.52998 * 109.47034 * 180.02562 * 19 18 16 21 21 H 1.08998 * 110.44022 * 305.70413 * 20 19 18 22 22 C 1.54813 * 110.48394 * 183.15873 * 20 19 18 23 23 C 1.55228 * 101.98593 * 220.52150 * 22 20 19 24 24 O 1.44382 * 103.56627 * 36.87970 * 23 22 20 25 25 C 1.43739 * 106.97292 * 320.01330 * 24 23 22 26 26 C 1.46930 * 120.62920 * 331.82704 * 9 7 2 27 27 H 0.96992 * 120.00301 * 359.97438 * 1 2 3 28 28 H 1.08992 * 109.58897 * 246.15587 * 10 9 7 29 29 H 1.09006 * 109.58031 * 6.43916 * 10 9 7 30 30 H 1.08996 * 109.49901 * 174.59003 * 11 10 9 31 31 H 1.08999 * 109.50001 * 294.65579 * 11 10 9 32 32 H 1.08997 * 109.46082 * 178.61135 * 12 11 10 33 33 H 1.09009 * 109.45622 * 58.65574 * 12 11 10 34 34 H 0.97002 * 119.99837 * 335.16516 * 15 13 12 35 35 H 1.09011 * 109.46715 * 60.00170 * 18 16 15 36 36 H 1.08998 * 109.47333 * 300.00343 * 18 16 15 37 37 H 1.09000 * 109.47257 * 300.00193 * 19 18 16 38 38 H 1.09000 * 109.46605 * 59.99897 * 19 18 16 39 39 H 1.09004 * 110.91164 * 338.64163 * 22 20 19 40 40 H 1.08994 * 110.90936 * 102.24990 * 22 20 19 41 41 H 1.09007 * 110.51582 * 278.38578 * 23 22 20 42 42 H 1.08997 * 110.78027 * 155.50610 * 23 22 20 43 43 H 1.08995 * 109.88153 * 267.08352 * 25 24 23 44 44 H 1.09005 * 109.99970 * 146.00856 * 25 24 23 45 45 H 1.09001 * 109.58266 * 113.84512 * 26 9 7 46 46 H 1.08996 * 109.70596 * 353.49677 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.1038 1.6966 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2221 -0.2729 9 7 1.3702 -2.3625 0.3441 10 6 1.8145 -3.6528 -0.2004 11 6 2.0688 -4.6174 0.9621 12 6 0.8136 -4.7017 1.8337 13 6 0.4985 -3.3203 2.4122 14 1 1.3478 -2.9682 2.9977 15 7 -0.6849 -3.4084 3.2714 16 6 -0.8704 -2.5082 4.2571 17 8 -0.0576 -1.6255 4.4331 18 6 -2.0880 -2.5984 5.1405 19 6 -2.0563 -1.4669 6.1699 20 6 -3.2921 -1.5589 7.0672 21 1 -4.2001 -1.5733 6.4643 22 6 -3.3245 -0.3778 8.0674 23 6 -3.8054 -1.0716 9.3701 24 8 -3.1600 -2.3624 9.3244 25 6 -3.2179 -2.8124 7.9604 26 6 0.2264 -2.3410 1.2661 27 1 -0.4850 0.8399 0.0004 28 1 1.0410 -4.0606 -0.8511 29 1 2.7337 -3.5122 -0.7691 30 1 2.3060 -5.6060 0.5693 31 1 2.9040 -4.2537 1.5606 32 1 0.9834 -5.4063 2.6478 33 1 -0.0266 -5.0422 1.2283 34 1 -1.3348 -4.1147 3.1309 35 1 -2.0921 -3.5586 5.6566 36 1 -2.9870 -2.5101 4.5305 37 1 -1.1574 -1.5557 6.7799 38 1 -2.0519 -0.5067 5.6541 39 1 -2.3299 0.0485 8.1985 40 1 -4.0338 0.3848 7.7460 41 1 -4.8896 -1.1842 9.3652 42 1 -3.4827 -0.5120 10.2481 43 1 -4.1052 -3.4275 7.8104 44 1 -2.3237 -3.3871 7.7192 45 1 -0.6766 -2.6418 0.7350 46 1 0.0966 -1.3359 1.6673 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481533417.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:58 Heat of formation + Delta-G solvation = -104.445898 kcal Electronic energy + Delta-G solvation = -24564.560270 eV Core-core repulsion = 21066.826327 eV Total energy + Delta-G solvation = -3497.733943 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.03854 -40.27422 -38.94508 -35.83594 -35.40976 -34.42676 -32.11952 -31.80693 -30.56510 -29.17736 -27.25554 -25.64326 -23.97602 -23.68104 -22.90377 -21.40265 -21.15886 -20.69140 -18.76831 -18.05713 -17.63400 -17.18946 -16.80941 -16.65032 -16.28356 -15.84216 -15.75328 -15.34555 -15.01684 -14.80745 -14.46838 -14.32881 -14.12872 -13.96499 -13.57415 -13.48115 -13.01568 -12.94414 -12.68524 -12.61723 -12.46638 -12.29824 -12.25232 -12.08441 -11.92005 -11.70499 -11.65901 -11.60196 -11.49131 -11.26745 -10.73072 -10.57407 -10.56720 -10.03677 -8.70037 -7.91194 -5.37268 1.38668 1.44784 1.49240 1.75861 2.28642 2.48229 3.05865 3.24896 3.55997 3.63207 3.79794 3.90066 3.96629 4.01128 4.13774 4.21494 4.26924 4.30317 4.31012 4.45380 4.48720 4.60816 4.66569 4.69516 4.81338 4.85181 4.85957 4.91646 4.95773 4.99282 5.07913 5.10925 5.19501 5.22751 5.23965 5.33313 5.34588 5.50048 5.53289 5.60208 5.79063 5.96992 6.34907 6.71084 7.10430 7.43781 7.83638 8.32466 9.13344 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.016516 B = 0.003603 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.878637 B = 7769.755016 C = 9098.248921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.049 4.049 3 Si 0.961 3.039 4 H -0.266 1.266 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.268 4.268 8 H 0.066 0.934 9 N -0.611 5.611 10 C 0.135 3.865 11 C -0.122 4.122 12 C -0.106 4.106 13 C 0.129 3.871 14 H 0.045 0.955 15 N -0.711 5.711 16 C 0.497 3.503 17 O -0.595 6.595 18 C -0.128 4.128 19 C -0.091 4.091 20 C -0.116 4.116 21 H 0.105 0.895 22 C -0.155 4.155 23 C 0.044 3.956 24 O -0.408 6.408 25 C 0.046 3.954 26 C 0.181 3.819 27 H 0.247 0.753 28 H 0.022 0.978 29 H 0.054 0.946 30 H 0.097 0.903 31 H 0.048 0.952 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.415 0.585 35 H 0.125 0.875 36 H 0.118 0.882 37 H 0.051 0.949 38 H 0.049 0.951 39 H 0.064 0.936 40 H 0.095 0.905 41 H 0.076 0.924 42 H 0.098 0.902 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.000 1.000 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.040 -10.499 13.899 20.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.245 4.245 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.398 4.398 8 H 0.084 0.916 9 N -0.335 5.335 10 C 0.010 3.990 11 C -0.162 4.162 12 C -0.144 4.144 13 C 0.022 3.978 14 H 0.063 0.937 15 N -0.363 5.363 16 C 0.285 3.715 17 O -0.475 6.475 18 C -0.168 4.168 19 C -0.129 4.129 20 C -0.134 4.134 21 H 0.123 0.877 22 C -0.193 4.193 23 C -0.032 4.032 24 O -0.328 6.328 25 C -0.031 4.031 26 C 0.053 3.947 27 H 0.056 0.944 28 H 0.040 0.960 29 H 0.072 0.928 30 H 0.116 0.884 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.252 0.748 35 H 0.143 0.857 36 H 0.136 0.864 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.114 0.886 41 H 0.095 0.905 42 H 0.116 0.884 43 H 0.097 0.903 44 H 0.102 0.898 45 H 0.018 0.982 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.465 -9.873 14.157 19.685 hybrid contribution 0.221 1.282 -0.574 1.422 sum -9.243 -8.592 13.583 18.541 Atomic orbital electron populations 1.70153 1.06626 1.25685 1.55064 1.25783 0.96076 1.01524 1.01074 0.85433 0.77807 0.79553 0.78288 1.19153 1.21823 1.21302 1.19464 0.92883 0.86278 1.41189 0.91589 1.44255 1.36110 1.02808 1.50339 1.21182 0.97552 0.85664 0.94590 1.21903 0.97098 1.00054 0.97128 1.21631 0.99001 0.94014 0.99716 1.21455 0.87415 0.97799 0.91087 0.93675 1.45946 1.25762 1.32096 1.32469 1.21614 0.88340 0.80448 0.81061 1.90721 1.48208 1.36319 1.72294 1.21761 0.95314 1.02555 0.97133 1.21288 0.97520 0.97915 0.96185 1.22571 0.98996 0.95045 0.96794 0.87669 1.23274 1.02599 0.98276 0.95108 1.23734 0.97768 0.83154 0.98533 1.88833 1.79995 1.35992 1.27964 1.23436 1.02840 0.96179 0.80606 1.20772 0.87990 0.97427 0.88468 0.94355 0.95960 0.92767 0.88419 0.93272 0.89612 0.90583 0.74829 0.85717 0.86435 0.92980 0.93188 0.91730 0.88635 0.90545 0.88399 0.90323 0.89788 0.98208 0.94060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.13 11.19 21.65 0.24 -57.89 16 2 C -0.05 -2.91 4.92 84.86 0.42 -2.49 16 3 Si 0.96 48.11 29.59 68.60 2.03 50.14 16 4 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 5 H -0.29 -14.57 7.11 99.48 0.71 -13.87 16 6 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 7 C -0.27 -15.64 9.58 84.03 0.81 -14.84 16 8 H 0.07 3.73 7.88 -2.91 -0.02 3.71 16 9 N -0.61 -32.09 2.99 -699.11 -2.09 -34.18 16 10 C 0.13 5.54 6.52 86.36 0.56 6.10 16 11 C -0.12 -3.85 6.08 30.67 0.19 -3.67 16 12 C -0.11 -3.09 5.35 30.62 0.16 -2.93 16 13 C 0.13 5.04 2.60 45.06 0.12 5.16 16 14 H 0.04 2.10 7.58 -2.39 -0.02 2.08 16 15 N -0.71 -21.92 5.08 -442.17 -2.25 -24.17 16 16 C 0.50 16.78 7.79 87.66 0.68 17.47 16 17 O -0.60 -27.64 15.65 -3.02 -0.05 -27.68 16 18 C -0.13 -2.68 5.54 29.85 0.17 -2.52 16 19 C -0.09 -2.13 3.70 30.59 0.11 -2.02 16 20 C -0.12 -1.92 3.06 -9.80 -0.03 -1.95 16 21 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 22 C -0.15 -2.56 6.73 31.98 0.22 -2.35 16 23 C 0.04 0.68 7.72 72.75 0.56 1.24 16 24 O -0.41 -8.63 11.52 -148.98 -1.72 -10.35 16 25 C 0.05 0.75 6.94 72.35 0.50 1.25 16 26 C 0.18 9.15 4.88 86.36 0.42 9.57 16 27 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 28 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.05 2.19 7.93 -2.38 -0.02 2.17 16 30 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 34 H 0.41 8.88 8.60 -92.71 -0.80 8.09 16 35 H 0.12 1.74 6.99 -2.38 -0.02 1.73 16 36 H 0.12 1.93 8.14 -2.39 -0.02 1.92 16 37 H 0.05 1.43 8.10 -2.39 -0.02 1.41 16 38 H 0.05 1.43 8.10 -2.39 -0.02 1.41 16 39 H 0.06 1.27 7.87 -2.39 -0.02 1.25 16 40 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 42 H 0.10 1.32 8.14 -2.39 -0.02 1.31 16 43 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.08 1.38 6.82 -2.38 -0.02 1.36 16 45 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 46 H 0.04 2.52 6.06 -2.39 -0.01 2.51 16 Total: -1.00 -80.17 360.71 1.21 -78.96 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.15 Total: 17.12 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 4.89 Total: 8.04 kcal Atomic # 7 Polarization: -112.14 SS G_CDS: -4.10 Total: -116.23 kcal Atomic # 8 Polarization: -36.27 SS G_CDS: -1.76 Total: -38.03 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.03 Total: 50.14 kcal Total: -80.17 1.21 -78.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481533417.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.483 kcal (2) G-P(sol) polarization free energy of solvation -80.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds