Wall clock time and date at job start Tue Mar 31 2020 03:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.35047 * 126.39920 * 2 1 4 4 N 1.30497 * 108.69850 * 180.26804 * 3 2 1 5 5 C 1.34136 * 109.25953 * 359.76348 * 4 3 2 6 6 C 1.34664 * 108.01527 * 0.02562 * 5 4 3 7 7 C 1.50702 * 126.59087 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47561 * 85.01536 * 7 6 5 9 9 C 1.50699 * 109.47187 * 180.02562 * 8 7 6 10 10 O 1.21286 * 119.99921 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99902 * 180.02562 * 9 8 7 12 12 C 1.46505 * 119.99861 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.46985 * 180.02562 * 12 11 9 14 14 H 1.09005 * 109.47159 * 64.99675 * 13 12 11 15 15 C 1.52999 * 109.47264 * 184.99674 * 13 12 11 16 16 O 1.42903 * 109.46807 * 54.99742 * 15 13 12 17 17 N 1.46498 * 109.47167 * 304.99505 * 13 12 11 18 18 C 1.36935 * 120.00239 * 154.99975 * 17 13 12 19 19 H 1.08004 * 120.00069 * 0.02562 * 18 17 13 20 20 C 1.38811 * 120.00368 * 180.02562 * 18 17 13 21 21 N 1.31624 * 119.99540 * 359.72375 * 20 18 17 22 22 Si 1.86800 * 120.00451 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47364 * 179.72253 * 22 20 18 24 24 H 1.48508 * 109.46883 * 299.72375 * 22 20 18 25 25 H 1.48497 * 109.46870 * 59.72186 * 22 20 18 26 26 H 1.09005 * 109.47492 * 270.12531 * 1 2 3 27 27 H 1.09002 * 109.46942 * 30.12184 * 1 2 3 28 28 H 1.09000 * 109.47443 * 150.12302 * 1 2 3 29 29 H 1.07997 * 125.65116 * 0.06288 * 3 2 1 30 30 H 1.08002 * 125.99108 * 179.97438 * 5 4 3 31 31 H 1.09008 * 109.46484 * 325.01999 * 7 6 5 32 32 H 1.08996 * 109.47232 * 205.02410 * 7 6 5 33 33 H 1.08997 * 109.46480 * 60.00428 * 8 7 6 34 34 H 1.09000 * 109.46904 * 300.00390 * 8 7 6 35 35 H 0.96994 * 120.00036 * 359.97438 * 11 9 8 36 36 H 1.08996 * 109.47079 * 59.99484 * 12 11 9 37 37 H 1.09001 * 109.46574 * 299.99257 * 12 11 9 38 38 H 1.08997 * 109.47298 * 174.99526 * 15 13 12 39 39 H 1.08997 * 109.46949 * 294.99894 * 15 13 12 40 40 H 0.96702 * 113.99897 * 179.97438 * 16 15 13 41 41 H 0.97004 * 119.99747 * 335.00715 * 17 13 12 42 42 H 0.97000 * 120.00481 * 0.27542 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6902 -0.0058 5 6 3.5460 -0.6506 -0.0044 6 6 2.2772 -1.1018 0.0019 7 6 1.8362 -2.5428 0.0050 8 6 1.8135 -3.0663 1.4425 9 6 1.3731 -4.5075 1.4455 10 8 1.1034 -5.0613 0.4007 11 7 1.2780 -5.1806 2.6092 12 6 0.8504 -6.5819 2.6120 13 6 0.8264 -7.1048 4.0497 14 1 0.0656 -6.5699 4.6182 15 6 0.5012 -8.5998 4.0432 16 8 1.4312 -9.2859 3.2027 17 7 2.1373 -6.8930 4.6683 18 6 2.2432 -6.7881 6.0295 19 1 1.3603 -6.8619 6.6471 20 6 3.4853 -6.5868 6.6157 21 7 4.5620 -6.5022 5.8634 22 14 3.6298 -6.4444 8.4726 23 1 5.0531 -6.2406 8.8442 24 1 2.8246 -5.2893 8.9446 25 1 3.1266 -7.6901 9.1052 26 1 -0.3634 0.0022 1.0277 27 1 -0.3633 0.8889 -0.5157 28 1 -0.3634 -0.8911 -0.5119 29 1 1.9335 2.1144 0.0010 30 1 4.4368 -1.2613 -0.0086 31 1 2.5323 -3.1371 -0.5871 32 1 0.8374 -2.6181 -0.4249 33 1 1.1175 -2.4721 2.0345 34 1 2.8124 -2.9910 1.8723 35 1 1.4933 -4.7376 3.4448 36 1 1.5473 -7.1756 2.0205 37 1 -0.1481 -6.6578 2.1815 38 1 0.5713 -8.9913 5.0580 39 1 -0.5099 -8.7500 3.6648 40 1 1.2850 -10.2404 3.1514 41 1 2.9304 -6.8269 4.1136 42 1 4.4871 -6.5766 4.8991 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486057707.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:07 Heat of formation + Delta-G solvation = -19.596530 kcal Electronic energy + Delta-G solvation = -23600.093923 eV Core-core repulsion = 20002.498981 eV Total energy + Delta-G solvation = -3597.594941 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.21263 -39.48337 -37.28195 -35.07943 -34.37009 -33.73698 -33.62425 -31.43823 -29.15011 -27.97826 -27.19572 -25.72208 -23.92503 -23.33485 -21.55382 -20.32771 -20.12022 -19.74008 -17.74027 -17.34960 -16.74570 -16.66569 -15.96833 -15.75890 -15.67338 -14.78059 -14.51968 -14.16056 -13.88534 -13.71097 -13.57047 -13.46313 -13.28122 -13.21476 -12.99461 -12.86448 -12.51788 -12.11182 -11.85295 -11.51041 -11.22149 -10.89460 -10.78485 -10.47425 -10.04750 -10.04542 -9.75313 -9.66335 -9.52031 -9.21710 -9.01415 -8.68485 -8.43807 -7.13683 -6.16437 -3.18431 1.87363 2.60099 2.87306 3.06561 3.46490 3.48919 3.53040 3.67705 4.42606 4.53090 4.58249 4.59448 4.77724 4.82842 4.86565 4.92183 5.07027 5.17112 5.30118 5.34643 5.42863 5.47277 5.51897 5.61328 5.75474 5.80063 5.92369 5.92794 5.96294 6.24960 6.27651 6.37318 6.62642 6.64319 6.81508 7.03564 7.70142 7.84991 7.96141 8.10318 8.49375 8.69218 9.13434 10.00260 10.15597 11.31046 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.014091 B = 0.003444 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.641479 B = 8127.116750 C = 9469.310218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.460 5.460 3 C 0.174 3.826 4 N -0.493 5.493 5 C -0.023 4.023 6 C -0.021 4.021 7 C -0.025 4.025 8 C -0.135 4.135 9 C 0.510 3.490 10 O -0.556 6.556 11 N -0.714 5.714 12 C 0.117 3.883 13 C 0.171 3.829 14 H 0.066 0.934 15 C 0.059 3.941 16 O -0.562 6.562 17 N -0.724 5.724 18 C -0.342 4.342 19 H 0.064 0.936 20 C -0.039 4.039 21 N -0.937 5.937 22 Si 1.079 2.921 23 H -0.285 1.285 24 H -0.295 1.295 25 H -0.296 1.296 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.203 0.797 30 H 0.170 0.830 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.409 0.591 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.049 0.951 39 H 0.027 0.973 40 H 0.365 0.635 41 H 0.372 0.628 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.767 9.430 -10.136 18.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.144 5.144 3 C -0.108 4.108 4 N -0.211 5.211 5 C -0.171 4.171 6 C -0.135 4.135 7 C -0.064 4.064 8 C -0.176 4.176 9 C 0.296 3.704 10 O -0.435 6.435 11 N -0.366 5.366 12 C -0.007 4.007 13 C 0.060 3.940 14 H 0.083 0.917 15 C -0.022 4.022 16 O -0.365 6.365 17 N -0.367 5.367 18 C -0.472 4.472 19 H 0.082 0.918 20 C -0.237 4.237 21 N -0.581 5.581 22 Si 0.910 3.090 23 H -0.210 1.210 24 H -0.223 1.223 25 H -0.224 1.224 26 H 0.096 0.904 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.220 0.780 30 H 0.187 0.813 31 H 0.114 0.886 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.119 0.881 35 H 0.245 0.755 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.046 0.954 40 H 0.210 0.790 41 H 0.206 0.794 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.296 10.390 -9.519 17.451 hybrid contribution -1.884 -1.190 -0.715 2.341 sum -12.180 9.199 -10.234 18.377 Atomic orbital electron populations 1.22056 0.76794 1.04691 1.03773 1.45319 1.07531 1.06797 1.54746 1.24907 0.85726 0.93361 1.06775 1.70277 1.19387 1.12134 1.19318 1.22139 0.95915 0.91017 1.08034 1.21310 0.91304 0.89763 1.11138 1.19724 1.03059 0.87390 0.96189 1.21635 1.04326 0.93165 0.98441 1.20540 0.77491 0.88587 0.83761 1.90670 1.50727 1.70447 1.31648 1.46041 1.67826 1.13258 1.09439 1.21553 0.99715 0.81137 0.98325 1.20518 0.90782 0.91544 0.91122 0.91654 1.23022 0.89759 0.95955 0.93484 1.86549 1.57154 1.23065 1.69766 1.42364 1.02559 1.87242 1.04554 1.20003 0.95779 1.48296 0.83146 0.91830 1.25747 0.91266 0.99982 1.06735 1.70869 1.29218 1.52174 1.05844 0.83263 0.75863 0.75784 0.74131 1.21005 1.22258 1.22355 0.90391 0.89442 0.89488 0.78031 0.81255 0.88650 0.90661 0.89407 0.88113 0.75488 0.90695 0.92133 0.93260 0.95439 0.79027 0.79433 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.40 11.00 59.84 0.66 1.06 16 2 N -0.46 -4.47 3.15 -121.37 -0.38 -4.85 16 3 C 0.17 1.81 12.56 -90.37 -1.14 0.68 16 4 N -0.49 -6.77 11.25 -14.66 -0.16 -6.93 16 5 C -0.02 -0.30 11.79 -17.81 -0.21 -0.51 16 6 C -0.02 -0.24 6.21 -81.60 -0.51 -0.75 16 7 C -0.02 -0.28 4.84 -27.88 -0.13 -0.41 16 8 C -0.14 -1.63 5.68 -27.88 -0.16 -1.79 16 9 C 0.51 7.94 7.83 -10.99 -0.09 7.85 16 10 O -0.56 -10.23 15.98 5.55 0.09 -10.15 16 11 N -0.71 -11.63 5.39 -60.29 -0.32 -11.95 16 12 C 0.12 2.04 5.12 -4.04 -0.02 2.01 16 13 C 0.17 3.22 2.84 -67.93 -0.19 3.03 16 14 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 15 C 0.06 1.02 6.86 37.16 0.25 1.28 16 16 O -0.56 -9.94 12.64 -35.23 -0.45 -10.38 16 17 N -0.72 -17.00 4.51 -53.43 -0.24 -17.24 16 18 C -0.34 -9.00 9.93 -15.06 -0.15 -9.15 16 19 H 0.06 1.64 7.83 -52.48 -0.41 1.23 16 20 C -0.04 -1.07 5.50 -17.43 -0.10 -1.17 16 21 N -0.94 -28.16 13.70 55.49 0.76 -27.40 16 22 Si 1.08 25.00 29.92 -169.99 -5.09 19.91 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.30 -6.49 7.11 56.52 0.40 -6.08 16 25 H -0.30 -6.60 7.11 56.52 0.40 -6.20 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.09 0.48 7.11 -51.93 -0.37 0.11 16 29 H 0.20 1.29 8.06 -52.49 -0.42 0.87 16 30 H 0.17 2.00 8.06 -52.49 -0.42 1.58 16 31 H 0.10 1.14 8.10 -51.92 -0.42 0.72 16 32 H 0.07 0.82 7.04 -51.93 -0.37 0.45 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.41 6.74 8.14 -40.82 -0.33 6.41 16 36 H 0.07 1.48 7.39 -51.93 -0.38 1.09 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.36 4.64 9.12 45.56 0.42 5.06 16 41 H 0.37 9.45 6.63 -40.82 -0.27 9.18 16 42 H 0.26 7.72 6.77 -40.82 -0.28 7.44 16 LS Contribution 357.34 15.07 5.39 5.39 Total: -1.00 -35.45 357.34 -7.62 -43.07 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: -5.43 Total: 18.42 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -1.78 Total: 2.12 kcal Atomic # 7 Polarization: -68.03 SS G_CDS: -0.35 Total: -68.38 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.36 Total: -20.53 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.09 Total: 19.91 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.45 -7.62 -43.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486057707.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.478 kcal (2) G-P(sol) polarization free energy of solvation -35.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds