Wall clock time and date at job start Tue Mar 31 2020 03:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42906 * 113.99899 * 2 1 4 4 C 1.52991 * 109.46643 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47388 * 65.71136 * 4 3 2 6 6 C 1.36935 * 119.99686 * 267.90477 * 5 4 3 7 7 H 1.07999 * 120.00248 * 142.25622 * 6 5 4 8 8 C 1.38816 * 120.00316 * 322.25291 * 6 5 4 9 9 N 1.31617 * 120.00402 * 156.38545 * 8 6 5 10 10 Si 1.86800 * 119.99675 * 336.38716 * 8 6 5 11 11 H 1.48503 * 109.47167 * 95.50693 * 10 8 6 12 12 H 1.48497 * 109.47247 * 215.50829 * 10 8 6 13 13 H 1.48504 * 109.47232 * 335.50814 * 10 8 6 14 14 C 1.46497 * 120.00221 * 87.90111 * 5 4 3 15 15 C 1.53003 * 109.46998 * 270.00195 * 14 5 4 16 16 N 1.46497 * 109.46998 * 179.97438 * 15 14 5 17 17 C 1.34778 * 119.99937 * 180.02562 * 16 15 14 18 18 O 1.21279 * 119.99995 * 359.97438 * 17 16 15 19 19 C 1.50698 * 119.99979 * 180.02562 * 17 16 15 20 20 C 1.50703 * 109.47244 * 179.97438 * 19 17 16 21 21 C 1.39865 * 125.90162 * 124.99524 * 20 19 17 22 22 C 1.35318 * 107.92192 * 179.75773 * 21 20 19 23 23 N 1.34941 * 107.74437 * 0.43124 * 22 21 20 24 24 H 0.97005 * 126.03784 * 179.83612 * 23 22 21 25 25 N 1.30841 * 125.89636 * 305.02432 * 20 19 17 26 26 H 1.09000 * 109.47071 * 299.99905 * 1 2 3 27 27 H 1.09002 * 109.47147 * 59.99422 * 1 2 3 28 28 H 1.09001 * 109.47387 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46777 * 59.99852 * 3 2 1 30 30 H 1.08996 * 109.46953 * 300.00131 * 3 2 1 31 31 H 1.09003 * 109.47551 * 305.70481 * 4 3 2 32 32 H 1.09007 * 109.46794 * 185.70584 * 4 3 2 33 33 H 0.96996 * 119.99979 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.47162 * 150.00467 * 14 5 4 35 35 H 1.09001 * 109.47353 * 29.99927 * 14 5 4 36 36 H 1.09000 * 109.46942 * 60.00138 * 15 14 5 37 37 H 1.08994 * 109.47138 * 299.99806 * 15 14 5 38 38 H 0.97000 * 120.00452 * 359.97438 * 16 15 14 39 39 H 1.09000 * 109.47175 * 59.99915 * 19 17 16 40 40 H 1.09001 * 109.47298 * 299.99401 * 19 17 16 41 41 H 1.08007 * 126.03704 * 0.02805 * 21 20 19 42 42 H 1.08001 * 126.12770 * 180.26591 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9779 0.5794 -1.2580 6 6 4.1403 -0.7774 -1.3454 7 1 3.8663 -1.2969 -2.2517 8 6 4.6572 -1.4854 -0.2690 9 7 4.3986 -2.7695 -0.1405 10 14 5.7200 -0.6154 0.9972 11 1 4.8779 -0.1965 2.1464 12 1 6.7810 -1.5396 1.4719 13 1 6.3459 0.5814 0.3799 14 6 4.2465 1.4258 -2.4232 15 6 2.9659 1.5828 -3.2456 16 7 3.2344 2.4297 -4.4105 17 6 2.2459 2.7081 -5.2834 18 8 1.1343 2.2572 -5.1048 19 6 2.5222 3.5788 -6.4819 20 6 1.2608 3.7335 -7.2919 21 6 0.6677 4.9446 -7.6628 22 6 -0.4410 4.6613 -8.3850 23 7 -0.5510 3.3185 -8.4601 24 1 -1.2531 2.8280 -8.9155 25 7 0.5312 2.7580 -7.7693 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6885 1.8464 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 3.8499 0.5582 0.8354 32 1 3.9783 2.1754 0.1028 33 1 4.7595 -3.2640 0.6118 34 1 5.0187 0.9633 -3.0379 35 1 4.5864 2.4063 -2.0895 36 1 2.1937 2.0452 -2.6309 37 1 2.6260 0.6024 -3.5794 38 1 4.1233 2.7907 -4.5532 39 1 3.2941 3.1161 -7.0969 40 1 2.8625 4.5591 -6.1482 41 1 1.0327 5.9317 -7.4198 42 1 -1.1182 5.3810 -8.8208 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486427069.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:43 Heat of formation + Delta-G solvation = 26.718295 kcal Electronic energy + Delta-G solvation = -23905.841595 eV Core-core repulsion = 20310.255016 eV Total energy + Delta-G solvation = -3595.586580 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.27850 -39.21411 -37.42556 -35.85130 -34.13064 -33.03255 -31.58535 -30.04891 -29.92676 -28.76624 -27.26526 -25.61525 -23.75380 -22.25828 -21.65918 -20.75026 -20.47429 -19.41696 -18.24862 -16.94039 -16.69218 -16.02659 -15.56732 -15.37297 -15.18427 -14.64453 -14.55796 -14.29274 -13.96073 -13.67979 -13.55469 -13.45379 -13.18441 -12.77644 -12.55143 -12.41244 -12.05194 -11.81047 -11.63379 -11.11424 -10.93419 -10.70231 -10.65673 -10.60241 -10.20012 -9.73962 -9.72291 -9.53094 -9.42366 -8.87162 -8.84175 -8.56624 -8.39544 -6.82376 -5.86825 -3.28679 1.81442 2.60063 2.77633 2.92668 3.38038 3.51489 3.54029 3.55863 4.45468 4.60533 4.64070 4.65618 4.97571 5.02266 5.13078 5.30792 5.48925 5.50856 5.59639 5.70618 5.74633 5.80347 5.83598 5.90845 5.99146 6.06043 6.16735 6.20491 6.25595 6.35324 6.47008 6.62150 6.69854 6.79842 6.92156 7.15663 7.60506 7.80478 8.01045 8.16946 8.48243 8.55042 9.04575 9.81823 10.16521 11.28969 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.022745 B = 0.003279 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.726734 B = 8536.938461 C = 9015.282165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.348 6.348 3 C 0.043 3.957 4 C 0.132 3.868 5 N -0.591 5.591 6 C -0.259 4.259 7 H 0.076 0.924 8 C 0.046 3.954 9 N -0.893 5.893 10 Si 0.872 3.128 11 H -0.287 1.287 12 H -0.302 1.302 13 H -0.271 1.271 14 C 0.140 3.860 15 C 0.097 3.903 16 N -0.728 5.728 17 C 0.509 3.491 18 O -0.527 6.527 19 C -0.062 4.062 20 C 0.087 3.913 21 C -0.267 4.267 22 C 0.051 3.949 23 N -0.479 5.479 24 H 0.438 0.562 25 N -0.259 5.259 26 H 0.025 0.975 27 H 0.031 0.969 28 H 0.078 0.922 29 H 0.027 0.973 30 H 0.040 0.960 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.261 0.739 34 H 0.063 0.937 35 H 0.041 0.959 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.396 0.604 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.147 0.853 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.536 18.184 -12.652 22.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.266 6.266 3 C -0.037 4.037 4 C 0.006 3.994 5 N -0.312 5.312 6 C -0.387 4.387 7 H 0.093 0.907 8 C -0.155 4.155 9 N -0.534 5.534 10 Si 0.702 3.298 11 H -0.215 1.215 12 H -0.230 1.230 13 H -0.196 1.196 14 C 0.013 3.987 15 C -0.028 4.028 16 N -0.380 5.380 17 C 0.293 3.707 18 O -0.402 6.402 19 C -0.103 4.103 20 C -0.081 4.081 21 C -0.297 4.297 22 C -0.096 4.096 23 N -0.187 5.187 24 H 0.281 0.719 25 N -0.082 5.082 26 H 0.044 0.956 27 H 0.049 0.951 28 H 0.097 0.903 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.230 0.770 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.165 0.835 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -6.316 16.239 -12.501 21.444 hybrid contribution 0.214 1.525 0.579 1.645 sum -6.103 17.763 -11.922 22.247 Atomic orbital electron populations 1.22647 0.83690 1.01896 0.98359 1.88278 1.17012 1.26456 1.94813 1.23372 0.97350 0.85201 0.97744 1.21383 0.90368 0.96753 0.90857 1.43889 1.76393 1.04267 1.06668 1.18579 1.37254 0.80075 1.02842 0.90658 1.25337 0.97856 0.94786 0.97529 1.69907 1.44257 1.08512 1.30683 0.87009 0.81307 0.79604 0.81895 1.21472 1.23049 1.19550 1.21017 0.93610 0.94311 0.89800 1.22380 1.00726 0.94262 0.85474 1.46042 1.12771 1.52694 1.26477 1.20300 0.85164 0.81483 0.83742 1.90748 1.22744 1.51907 1.74841 1.20063 0.94208 1.01876 0.94195 1.21595 0.96751 0.91240 0.98542 1.21381 0.99742 0.98929 1.09657 1.22532 0.99632 0.86307 1.01144 1.46411 1.23116 1.05032 1.44128 0.71862 1.77467 0.97458 1.21141 1.12118 0.95612 0.95078 0.90316 0.95488 0.94183 0.91565 0.92817 0.92928 0.91869 0.94115 0.92383 0.91258 0.77049 0.87286 0.87092 0.83531 0.80851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 101.05 1.11 1.69 16 2 O -0.35 -8.10 10.31 -35.23 -0.36 -8.47 16 3 C 0.04 0.86 6.27 37.15 0.23 1.09 16 4 C 0.13 2.86 4.90 -4.04 -0.02 2.84 16 5 N -0.59 -13.71 2.04 -173.24 -0.35 -14.07 16 6 C -0.26 -7.25 9.53 -15.06 -0.14 -7.39 16 7 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 8 C 0.05 1.33 5.26 -17.43 -0.09 1.24 16 9 N -0.89 -27.77 13.97 55.49 0.78 -27.00 16 10 Si 0.87 22.11 25.15 -169.99 -4.28 17.83 16 11 H -0.29 -7.16 6.66 56.52 0.38 -6.78 16 12 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 13 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 14 C 0.14 2.58 5.83 -4.04 -0.02 2.55 16 15 C 0.10 1.75 5.95 -4.04 -0.02 1.72 16 16 N -0.73 -10.10 5.56 -60.30 -0.33 -10.43 16 17 C 0.51 7.70 7.82 -10.99 -0.09 7.62 16 18 O -0.53 -10.70 15.56 5.56 0.09 -10.62 16 19 C -0.06 -0.65 6.28 -29.03 -0.18 -0.83 16 20 C 0.09 1.11 6.02 -82.40 -0.50 0.61 16 21 C -0.27 -2.68 10.72 -40.01 -0.43 -3.11 16 22 C 0.05 0.43 11.99 -17.23 -0.21 0.23 16 23 N -0.48 -4.99 7.36 30.44 0.22 -4.77 16 24 H 0.44 3.13 8.96 -182.60 -1.64 1.50 16 25 N -0.26 -3.81 12.04 33.67 0.41 -3.41 16 26 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.04 0.77 5.94 -51.93 -0.31 0.47 16 31 H 0.07 1.60 3.50 -51.93 -0.18 1.42 16 32 H 0.05 0.98 7.92 -51.93 -0.41 0.57 16 33 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 34 H 0.06 1.16 8.04 -51.93 -0.42 0.74 16 35 H 0.04 0.64 7.91 -51.93 -0.41 0.23 16 36 H 0.06 1.12 6.00 -51.93 -0.31 0.81 16 37 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.40 3.97 8.47 -40.82 -0.35 3.63 16 39 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.11 0.77 8.12 -51.93 -0.42 0.35 16 41 H 0.15 1.07 8.06 -52.48 -0.42 0.65 16 42 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 LS Contribution 350.66 15.07 5.28 5.28 Total: -1.00 -38.80 350.66 -6.32 -45.12 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -7.41 Total: 2.26 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: -0.36 Total: 8.26 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: 0.72 Total: -59.67 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.28 Total: -19.08 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.28 Total: 17.83 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -38.80 -6.32 -45.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486427069.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.837 kcal (2) G-P(sol) polarization free energy of solvation -38.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds