Wall clock time and date at job start Tue Mar 31 2020 03:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 120.00013 * 2 1 4 4 C 1.52999 * 109.47658 * 270.00029 * 3 2 1 5 5 O 1.42898 * 109.46771 * 64.99700 * 4 3 2 6 6 C 1.42904 * 113.99856 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47213 * 179.97438 * 6 5 4 8 8 N 1.46504 * 109.46564 * 65.00383 * 7 6 5 9 9 C 1.36937 * 119.99415 * 179.97438 * 8 7 6 10 10 H 1.07998 * 120.00295 * 0.02562 * 9 8 7 11 11 C 1.38816 * 119.99693 * 180.02562 * 9 8 7 12 12 N 1.31618 * 119.99890 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00018 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47355 * 89.99718 * 13 11 9 15 15 H 1.48500 * 109.47443 * 209.99776 * 13 11 9 16 16 H 1.48503 * 109.47035 * 329.99692 * 13 11 9 17 17 C 1.34780 * 119.99754 * 180.02562 * 2 1 3 18 18 O 1.21282 * 119.99800 * 180.02562 * 17 2 1 19 19 C 1.50690 * 119.99940 * 359.97438 * 17 2 1 20 20 N 1.46501 * 109.47169 * 180.02562 * 19 17 2 21 21 C 1.36890 * 126.39537 * 270.03160 * 20 19 17 22 22 C 1.34669 * 106.81617 * 179.97438 * 21 20 19 23 23 N 1.34134 * 108.02026 * 0.02562 * 22 21 20 24 24 C 1.30493 * 109.25480 * 0.02562 * 23 22 21 25 25 H 1.08996 * 109.47470 * 270.00000 * 1 2 3 26 26 H 1.09003 * 109.47106 * 29.99722 * 1 2 3 27 27 H 1.09007 * 109.47023 * 149.99553 * 1 2 3 28 28 H 1.09004 * 109.47297 * 30.00154 * 3 2 1 29 29 H 1.09002 * 109.46814 * 149.99730 * 3 2 1 30 30 H 1.08999 * 109.47229 * 185.00056 * 4 3 2 31 31 H 1.09005 * 109.46453 * 305.00352 * 4 3 2 32 32 H 1.08998 * 109.47328 * 300.00315 * 6 5 4 33 33 H 1.09005 * 109.46871 * 60.00205 * 6 5 4 34 34 H 1.08997 * 109.47263 * 184.99874 * 7 6 5 35 35 H 1.08995 * 109.47242 * 305.00269 * 7 6 5 36 36 H 0.96996 * 120.00403 * 359.97438 * 8 7 6 37 37 H 0.97005 * 119.99713 * 180.02562 * 12 11 9 38 38 H 1.09002 * 109.47377 * 60.00594 * 19 17 2 39 39 H 1.08998 * 109.47638 * 299.99878 * 19 17 2 40 40 H 1.07996 * 126.59258 * 359.97438 * 21 20 19 41 41 H 1.08002 * 125.99042 * 180.26007 * 22 21 20 42 42 H 1.08006 * 125.64594 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7105 -1.4424 5 8 1.2061 1.9936 -2.0813 6 6 1.3324 2.4166 -3.4404 7 6 -0.0566 2.6897 -4.0208 8 7 -0.6657 3.8215 -3.3177 9 6 -1.9178 4.2514 -3.6679 10 1 -2.4564 3.7558 -4.4620 11 6 -2.4947 5.3241 -3.0021 12 7 -1.8384 5.9277 -2.0339 13 14 -4.2030 5.9101 -3.4792 14 1 -5.2181 5.1847 -2.6739 15 1 -4.3162 7.3682 -3.2212 16 1 -4.4328 5.6435 -4.9219 17 6 2.1389 -1.1673 -0.0005 18 8 3.3517 -1.1673 -0.0001 19 6 1.3853 -2.4722 -0.0005 20 7 2.3373 -3.5858 -0.0005 21 6 2.8655 -4.2028 -1.1024 22 6 3.6902 -5.1671 -0.6511 23 7 3.6658 -5.1400 0.6897 24 6 2.8569 -4.1959 1.0864 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5139 28 1 1.6084 2.0284 0.5139 29 1 3.1499 1.1383 0.5139 30 1 3.0733 2.6065 -1.4437 31 1 2.9643 0.9131 -1.9815 32 1 1.9301 3.3271 -3.4836 33 1 1.8208 1.6336 -4.0207 34 1 0.0327 2.9261 -5.0811 35 1 -0.6823 1.8058 -3.8971 36 1 -0.1820 4.2663 -2.6043 37 1 -2.2417 6.6771 -1.5684 38 1 0.7584 -2.5298 -0.8903 39 1 0.7590 -2.5302 0.8897 40 1 2.6604 -3.9625 -2.1351 41 1 4.2725 -5.8413 -1.2618 42 1 2.6401 -3.9433 2.1139 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486499357.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:47 Heat of formation + Delta-G solvation = -15.104444 kcal Electronic energy + Delta-G solvation = -23647.986571 eV Core-core repulsion = 20050.586421 eV Total energy + Delta-G solvation = -3597.400150 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.00104 -40.94662 -39.06028 -36.87367 -36.14840 -34.99733 -33.42520 -31.58433 -30.39915 -29.44970 -28.56996 -27.24194 -25.50835 -24.12857 -22.79479 -22.28357 -22.10589 -20.48406 -19.23373 -18.61297 -18.39104 -17.52193 -17.41434 -16.86649 -16.76786 -16.14870 -15.72918 -15.68204 -15.16569 -14.99896 -14.78619 -14.69718 -14.41005 -14.23117 -14.07871 -13.84972 -13.44612 -13.32864 -13.18782 -13.00486 -12.74886 -12.70373 -12.53637 -12.13325 -11.91509 -11.69938 -11.44097 -10.98516 -10.95126 -10.59416 -10.42721 -9.76148 -9.43104 -8.96878 -7.91907 -5.20306 1.02221 1.39864 1.49555 1.50844 1.59293 1.68639 2.12957 2.25506 2.58209 2.74007 3.35808 3.42206 3.75508 3.87384 3.95167 3.97853 4.03680 4.09380 4.12864 4.27221 4.35310 4.44214 4.45819 4.51528 4.57950 4.64509 4.69833 4.77115 4.81649 4.99314 5.08586 5.14528 5.28241 5.38250 5.51117 5.81144 6.14530 6.25913 6.30115 6.36188 6.96674 7.13269 7.36587 8.12380 8.36523 9.31594 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.027540 B = 0.002678 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.443993 B =10454.906565 C =10562.453537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.598 5.598 3 C 0.121 3.879 4 C 0.048 3.952 5 O -0.387 6.387 6 C 0.067 3.933 7 C 0.152 3.848 8 N -0.740 5.740 9 C -0.244 4.244 10 H 0.076 0.924 11 C -0.075 4.075 12 N -0.969 5.969 13 Si 0.972 3.028 14 H -0.286 1.286 15 H -0.297 1.297 16 H -0.270 1.270 17 C 0.493 3.507 18 O -0.575 6.575 19 C 0.091 3.909 20 N -0.447 5.447 21 C -0.048 4.048 22 C -0.057 4.057 23 N -0.537 5.537 24 C 0.184 3.816 25 H 0.080 0.920 26 H 0.065 0.935 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.062 0.938 31 H 0.043 0.957 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.040 0.960 35 H 0.027 0.973 36 H 0.375 0.625 37 H 0.250 0.750 38 H 0.149 0.851 39 H 0.161 0.839 40 H 0.193 0.807 41 H 0.180 0.820 42 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.868 -17.935 4.236 19.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.330 5.330 3 C -0.003 4.003 4 C -0.030 4.030 5 O -0.307 6.307 6 C -0.010 4.010 7 C 0.026 3.974 8 N -0.383 5.383 9 C -0.375 4.375 10 H 0.094 0.906 11 C -0.268 4.268 12 N -0.619 5.619 13 Si 0.802 3.198 14 H -0.213 1.213 15 H -0.224 1.224 16 H -0.195 1.195 17 C 0.281 3.719 18 O -0.455 6.455 19 C -0.035 4.035 20 N -0.129 5.129 21 C -0.180 4.180 22 C -0.203 4.203 23 N -0.255 5.255 24 C -0.099 4.099 25 H 0.098 0.902 26 H 0.084 0.916 27 H 0.114 0.886 28 H 0.111 0.889 29 H 0.114 0.886 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.045 0.955 36 H 0.207 0.793 37 H 0.059 0.941 38 H 0.167 0.833 39 H 0.178 0.822 40 H 0.210 0.790 41 H 0.197 0.803 42 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 6.508 -18.374 4.715 20.054 hybrid contribution -0.686 1.548 -0.665 1.819 sum 5.822 -16.826 4.050 18.259 Atomic orbital electron populations 1.22104 0.76837 1.04802 1.03306 1.47837 1.08512 1.04989 1.71625 1.21520 0.98611 0.85235 0.94885 1.22908 0.86598 0.99274 0.94207 1.87960 1.29369 1.87581 1.25775 1.22641 0.97119 0.98408 0.82839 1.20850 0.91827 0.90047 0.94676 1.42483 1.17262 1.36186 1.42378 1.19640 0.93559 1.10432 1.13909 0.90610 1.25547 1.02455 0.99545 0.99214 1.69828 1.39397 1.25538 1.27178 0.85156 0.79978 0.76679 0.78029 1.21269 1.22419 1.19498 1.21288 0.87943 0.86510 0.76174 1.90763 1.15571 1.87675 1.51476 1.22020 0.90330 0.80936 1.10173 1.45197 1.34865 1.25779 1.07101 1.23091 1.02415 0.98828 0.93699 1.22622 1.03823 1.02720 0.91152 1.70235 1.20341 1.21758 1.13201 1.25470 0.96269 0.93336 0.94779 0.90193 0.91563 0.88582 0.88868 0.88604 0.92017 0.93855 0.93755 0.91059 0.94188 0.95475 0.79293 0.94100 0.83312 0.82194 0.78954 0.80251 0.75667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.08 10.06 127.77 1.29 2.37 16 2 N -0.60 -11.45 2.84 -846.75 -2.40 -13.85 16 3 C 0.12 2.69 5.81 86.38 0.50 3.19 16 4 C 0.05 1.21 6.28 71.98 0.45 1.66 16 5 O -0.39 -12.05 9.11 -148.98 -1.36 -13.41 16 6 C 0.07 2.05 6.07 71.98 0.44 2.49 16 7 C 0.15 5.80 6.65 86.38 0.57 6.38 16 8 N -0.74 -36.83 5.55 -343.45 -1.91 -38.74 16 9 C -0.24 -13.30 9.99 84.03 0.84 -12.46 16 10 H 0.08 3.95 7.83 -2.91 -0.02 3.92 16 11 C -0.08 -4.25 5.50 84.86 0.47 -3.78 16 12 N -0.97 -58.33 13.06 21.65 0.28 -58.05 16 13 Si 0.97 45.00 29.55 68.60 2.03 47.03 16 14 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 15 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 16 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 17 C 0.49 9.78 7.74 87.65 0.68 10.45 16 18 O -0.58 -16.79 16.01 -3.04 -0.05 -16.84 16 19 C 0.09 1.03 5.18 85.63 0.44 1.48 16 20 N -0.45 -7.90 2.24 -533.16 -1.19 -9.10 16 21 C -0.05 -0.90 11.58 83.08 0.96 0.06 16 22 C -0.06 -1.27 11.87 83.52 0.99 -0.28 16 23 N -0.54 -13.81 11.25 -200.31 -2.25 -16.07 16 24 C 0.18 3.71 12.56 180.27 2.26 5.97 16 25 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.07 1.52 7.12 -2.39 -0.02 1.50 16 27 H 0.10 0.88 6.44 -2.38 -0.02 0.86 16 28 H 0.09 2.08 8.07 -2.39 -0.02 2.06 16 29 H 0.10 2.14 7.42 -2.39 -0.02 2.12 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.38 20.15 7.67 -92.71 -0.71 19.44 16 37 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 38 H 0.15 0.98 7.40 -2.39 -0.02 0.96 16 39 H 0.16 0.68 8.11 -2.39 -0.02 0.66 16 40 H 0.19 2.58 8.06 -2.91 -0.02 2.55 16 41 H 0.18 3.20 8.06 -2.91 -0.02 3.17 16 42 H 0.23 2.93 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -78.29 359.76 3.35 -74.94 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 0.30 Total: 26.54 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: 9.90 Total: 17.54 kcal Atomic # 7 Polarization: -128.33 SS G_CDS: -7.47 Total: -135.80 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -1.41 Total: -30.25 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -78.29 3.35 -74.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486499357.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.839 kcal (2) G-P(sol) polarization free energy of solvation -78.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds