Wall clock time and date at job start Tue Mar 31 2020 03:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36938 * 119.99898 * 2 1 4 4 H 1.08007 * 119.99972 * 213.79883 * 3 2 1 5 5 C 1.38803 * 120.00203 * 33.80088 * 3 2 1 6 6 N 1.31620 * 119.99965 * 5.55388 * 5 3 2 7 7 Si 1.86798 * 120.00187 * 185.56134 * 5 3 2 8 8 H 1.48500 * 109.47309 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47303 * 119.99807 * 7 5 3 10 10 H 1.48501 * 109.46967 * 239.99692 * 7 5 3 11 11 C 1.46501 * 120.00240 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47486 * 270.00102 * 11 2 1 13 13 O 1.42910 * 109.46673 * 65.00013 * 12 11 2 14 14 C 1.42899 * 113.99253 * 180.02562 * 13 12 11 15 15 C 1.53007 * 109.46683 * 179.97438 * 14 13 12 16 16 N 1.46500 * 109.47251 * 65.00017 * 15 14 13 17 17 C 1.46499 * 119.99635 * 269.72856 * 16 15 14 18 18 C 1.34775 * 120.00047 * 89.99602 * 16 15 14 19 19 O 1.21605 * 120.00018 * 356.34957 * 18 16 15 20 20 C 1.47411 * 119.99880 * 176.34385 * 18 16 15 21 21 N 1.31610 * 125.86147 * 5.93337 * 20 18 16 22 22 C 1.33105 * 109.09377 * 179.83383 * 21 20 18 23 23 C 1.35570 * 108.34873 * 0.43041 * 22 21 20 24 24 N 1.35408 * 107.15659 * 359.74235 * 23 22 21 25 25 H 0.96997 * 126.43512 * 179.97438 * 24 23 22 26 26 H 1.08998 * 109.46954 * 265.09580 * 1 2 3 27 27 H 1.08995 * 109.46876 * 25.09844 * 1 2 3 28 28 H 1.09003 * 109.47041 * 145.09784 * 1 2 3 29 29 H 0.97001 * 120.00048 * 180.02562 * 6 5 3 30 30 H 1.09005 * 109.47308 * 149.99615 * 11 2 1 31 31 H 1.09001 * 109.46942 * 30.00161 * 11 2 1 32 32 H 1.08995 * 109.47304 * 305.00214 * 12 11 2 33 33 H 1.08998 * 109.46912 * 184.99720 * 12 11 2 34 34 H 1.08998 * 109.47714 * 60.00389 * 14 13 12 35 35 H 1.09002 * 109.47557 * 299.99675 * 14 13 12 36 36 H 1.08994 * 109.46968 * 304.99934 * 15 14 13 37 37 H 1.09001 * 109.46874 * 185.00076 * 15 14 13 38 38 H 1.08994 * 109.47628 * 95.63975 * 17 16 15 39 39 H 1.09003 * 109.46866 * 215.63699 * 17 16 15 40 40 H 1.09004 * 109.47450 * 335.63299 * 17 16 15 41 41 H 1.07997 * 125.82684 * 180.21022 * 22 21 20 42 42 H 1.07998 * 126.42154 * 179.77763 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0928 1.2650 -0.5203 5 6 1.6316 2.2864 0.6687 6 7 0.5397 2.1623 1.3930 7 14 2.4840 3.9436 0.5406 8 1 3.6825 3.8181 -0.3272 9 1 1.5492 4.9371 -0.0464 10 1 2.8982 4.3932 1.8939 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7098 1.4432 13 8 1.2060 -1.9927 2.0822 14 6 1.3324 -2.4151 3.4414 15 6 -0.0567 -2.6880 4.0219 16 7 -0.6657 -3.8201 3.3194 17 6 -1.4848 -3.5874 2.1272 18 6 -0.4770 -5.0752 3.7729 19 8 0.2524 -5.2742 4.7253 20 6 -1.1548 -6.2065 3.1145 21 7 -1.8767 -6.1393 2.0161 22 6 -2.3275 -7.3553 1.7162 23 6 -1.8839 -8.2200 2.6615 24 7 -1.1464 -7.5042 3.5431 25 1 -0.6969 -7.8478 4.3309 26 1 -0.3633 -0.0879 1.0239 27 1 -0.3633 0.9306 -0.4359 28 1 -0.3633 -0.8428 -0.5880 29 1 0.1774 2.9315 1.8600 30 1 3.1500 -1.1386 -0.5134 31 1 1.6085 -2.0286 -0.5130 32 1 2.9642 -0.9123 1.9819 33 1 3.0733 -2.6058 1.4448 34 1 1.8206 -1.6319 4.0214 35 1 1.9301 -3.3256 3.4850 36 1 -0.6824 -1.8042 3.8978 37 1 0.0327 -2.9239 5.0824 38 1 -0.8714 -3.7120 1.2349 39 1 -2.3067 -4.3031 2.1058 40 1 -1.8859 -2.5742 2.1540 41 1 -2.9445 -7.6092 0.8670 42 1 -2.0812 -9.2810 2.7032 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489212864.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:44 Heat of formation + Delta-G solvation = 20.162445 kcal Electronic energy + Delta-G solvation = -24458.736191 eV Core-core repulsion = 20862.865328 eV Total energy + Delta-G solvation = -3595.870863 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.44722 -39.51874 -37.36242 -35.68163 -34.87876 -32.90661 -31.52116 -30.67578 -29.21575 -27.85906 -26.35935 -25.61396 -24.00744 -22.88080 -21.99406 -21.74924 -20.24180 -20.07166 -18.07485 -16.85682 -16.51109 -16.25162 -15.91574 -15.51897 -15.16828 -14.71643 -14.58664 -14.17972 -14.07545 -13.67229 -13.55501 -13.26654 -12.91942 -12.69195 -12.39266 -12.08647 -11.95502 -11.36430 -11.25856 -10.88281 -10.80800 -10.69354 -10.49701 -10.43320 -10.33939 -10.02253 -9.93820 -9.83564 -9.78004 -8.89314 -8.79870 -8.48092 -8.42473 -6.45528 -5.65504 -3.18869 1.19627 2.41021 2.42816 3.27434 3.34664 3.40368 3.47874 3.49650 4.12708 4.39412 4.56779 4.66060 4.96307 5.12664 5.35687 5.43740 5.48810 5.61719 5.67135 5.69342 5.77259 5.92380 6.01147 6.07173 6.22305 6.28274 6.32500 6.37925 6.48726 6.64593 6.69414 6.89020 6.90396 7.05891 7.33816 7.51569 7.58044 7.89105 7.93708 8.01196 8.06385 8.57563 9.36155 9.96892 10.54301 11.39554 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.028818 B = 0.003324 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.384996 B = 8420.892002 C = 8681.194691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.173 3.827 2 N -0.593 5.593 3 C -0.261 4.261 4 H 0.061 0.939 5 C 0.011 3.989 6 N -0.896 5.896 7 Si 0.898 3.102 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.290 1.290 11 C 0.153 3.847 12 C 0.046 3.954 13 O -0.363 6.363 14 C 0.049 3.951 15 C 0.122 3.878 16 N -0.573 5.573 17 C 0.077 3.923 18 C 0.597 3.403 19 O -0.554 6.554 20 C 0.154 3.846 21 N -0.434 5.434 22 C -0.032 4.032 23 C -0.029 4.029 24 N -0.527 5.527 25 H 0.429 0.571 26 H 0.026 0.974 27 H 0.041 0.959 28 H -0.009 1.009 29 H 0.250 0.750 30 H 0.055 0.945 31 H 0.041 0.959 32 H 0.047 0.953 33 H 0.019 0.981 34 H 0.054 0.946 35 H 0.040 0.960 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.100 0.900 40 H 0.070 0.930 41 H 0.178 0.822 42 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.667 -19.788 4.292 21.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.315 5.315 3 C -0.391 4.391 4 H 0.079 0.921 5 C -0.188 4.188 6 N -0.540 5.540 7 Si 0.728 3.272 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.217 1.217 11 C 0.026 3.974 12 C -0.033 4.033 13 O -0.281 6.281 14 C -0.030 4.030 15 C 0.000 4.000 16 N -0.303 5.303 17 C -0.065 4.065 18 C 0.382 3.618 19 O -0.433 6.433 20 C -0.107 4.107 21 N -0.157 5.157 22 C -0.184 4.184 23 C -0.168 4.168 24 N -0.129 5.129 25 H 0.268 0.732 26 H 0.044 0.956 27 H 0.059 0.941 28 H 0.009 0.991 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.038 0.962 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.083 0.917 39 H 0.118 0.882 40 H 0.088 0.912 41 H 0.196 0.804 42 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -5.717 -18.928 4.323 20.239 hybrid contribution 1.095 -0.040 0.992 1.478 sum -4.622 -18.968 5.315 20.233 Atomic orbital electron populations 1.20650 0.82700 0.96000 0.97864 1.43748 1.01826 1.00165 1.85811 1.19164 1.05304 0.88149 1.26490 0.92108 1.25284 0.97942 0.98939 0.96679 1.70042 1.22077 1.28979 1.32859 0.86292 0.79141 0.84522 0.77228 1.20317 1.21662 1.21731 1.20897 0.96248 0.88954 0.91346 1.23408 0.85319 0.96530 0.98042 1.87970 1.30087 1.87216 1.22851 1.22722 0.96388 0.97977 0.85878 1.21694 0.94157 0.88115 0.96071 1.47475 1.49235 1.04649 1.28951 1.22337 0.95628 1.02718 0.85867 1.16560 0.80879 0.81690 0.82622 1.90811 1.39144 1.84467 1.28852 1.22731 1.05855 0.85597 0.96498 1.70488 1.10211 1.24001 1.10956 1.22648 1.05563 0.88584 1.01639 1.22972 1.00713 0.99426 0.93697 1.42955 1.38694 1.08030 1.23226 0.73183 0.95584 0.94067 0.99089 0.93940 0.92633 0.94024 0.93483 0.96243 0.92788 0.94197 0.88585 0.88952 0.91723 0.88189 0.91166 0.80443 0.79798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.39 8.65 59.85 0.52 4.91 16 2 N -0.59 -15.40 2.85 -181.12 -0.52 -15.91 16 3 C -0.26 -7.30 9.54 -15.06 -0.14 -7.44 16 4 H 0.06 1.68 7.83 -52.48 -0.41 1.26 16 5 C 0.01 0.31 5.17 -17.43 -0.09 0.22 16 6 N -0.90 -26.29 11.09 55.49 0.62 -25.68 16 7 Si 0.90 21.97 29.56 -169.99 -5.02 16.95 16 8 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 9 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 10 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 11 C 0.15 3.33 6.12 -4.04 -0.02 3.31 16 12 C 0.05 0.95 6.28 37.16 0.23 1.19 16 13 O -0.36 -7.42 9.34 -35.23 -0.33 -7.75 16 14 C 0.05 0.84 6.28 37.16 0.23 1.08 16 15 C 0.12 1.86 5.82 -4.04 -0.02 1.83 16 16 N -0.57 -8.67 2.84 -182.85 -0.52 -9.19 16 17 C 0.08 1.11 9.29 59.85 0.56 1.66 16 18 C 0.60 9.05 7.67 -12.53 -0.10 8.95 16 19 O -0.55 -9.32 16.71 5.27 0.09 -9.23 16 20 C 0.15 2.00 7.67 -154.53 -1.19 0.81 16 21 N -0.43 -5.48 7.67 -11.26 -0.09 -5.57 16 22 C -0.03 -0.30 11.85 -17.95 -0.21 -0.51 16 23 C -0.03 -0.21 12.01 -16.93 -0.20 -0.42 16 24 N -0.53 -4.93 6.15 -10.78 -0.07 -5.00 16 25 H 0.43 3.11 8.96 -40.82 -0.37 2.74 16 26 H 0.03 0.70 7.60 -51.93 -0.39 0.31 16 27 H 0.04 1.12 7.23 -51.93 -0.38 0.74 16 28 H -0.01 -0.22 7.96 -51.93 -0.41 -0.63 16 29 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.06 1.14 8.04 -51.93 -0.42 0.72 16 31 H 0.04 0.85 7.94 -51.93 -0.41 0.44 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.10 1.47 7.85 -51.93 -0.41 1.06 16 37 H 0.09 1.30 7.47 -51.93 -0.39 0.91 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.10 1.35 5.28 -51.93 -0.27 1.08 16 40 H 0.07 1.02 7.83 -51.93 -0.41 0.61 16 41 H 0.18 1.15 8.06 -52.49 -0.42 0.72 16 42 H 0.18 0.57 8.06 -52.49 -0.42 0.14 16 LS Contribution 353.00 15.07 5.32 5.32 Total: -1.00 -33.97 353.00 -7.32 -41.28 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -6.36 Total: -0.84 kcal Atomic # 6 Polarization: 16.04 SS G_CDS: -0.44 Total: 15.61 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: -0.57 Total: -61.34 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.24 Total: -16.98 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.97 -7.32 -41.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489212864.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.447 kcal (2) G-P(sol) polarization free energy of solvation -33.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds