Wall clock time and date at job start Tue Mar 31 2020 03:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36938 * 119.99898 * 2 1 4 4 H 1.08007 * 119.99972 * 213.79883 * 3 2 1 5 5 C 1.38803 * 120.00203 * 33.80088 * 3 2 1 6 6 N 1.31620 * 119.99965 * 5.55388 * 5 3 2 7 7 Si 1.86798 * 120.00187 * 185.56134 * 5 3 2 8 8 H 1.48500 * 109.47309 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47303 * 119.99807 * 7 5 3 10 10 H 1.48501 * 109.46967 * 239.99692 * 7 5 3 11 11 C 1.46501 * 120.00240 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47486 * 270.00102 * 11 2 1 13 13 O 1.42910 * 109.46673 * 65.00013 * 12 11 2 14 14 C 1.42899 * 113.99253 * 180.02562 * 13 12 11 15 15 C 1.53007 * 109.46683 * 179.97438 * 14 13 12 16 16 N 1.46500 * 109.47251 * 65.00017 * 15 14 13 17 17 C 1.46499 * 119.99635 * 269.72856 * 16 15 14 18 18 C 1.34775 * 120.00047 * 89.99602 * 16 15 14 19 19 O 1.21605 * 120.00018 * 356.34957 * 18 16 15 20 20 C 1.47411 * 119.99880 * 176.34385 * 18 16 15 21 21 N 1.31610 * 125.86147 * 5.93337 * 20 18 16 22 22 C 1.33105 * 109.09377 * 179.83383 * 21 20 18 23 23 C 1.35570 * 108.34873 * 0.43041 * 22 21 20 24 24 N 1.35408 * 107.15659 * 359.74235 * 23 22 21 25 25 H 0.96997 * 126.43512 * 179.97438 * 24 23 22 26 26 H 1.08998 * 109.46954 * 265.09580 * 1 2 3 27 27 H 1.08995 * 109.46876 * 25.09844 * 1 2 3 28 28 H 1.09003 * 109.47041 * 145.09784 * 1 2 3 29 29 H 0.97001 * 120.00048 * 180.02562 * 6 5 3 30 30 H 1.09005 * 109.47308 * 149.99615 * 11 2 1 31 31 H 1.09001 * 109.46942 * 30.00161 * 11 2 1 32 32 H 1.08995 * 109.47304 * 305.00214 * 12 11 2 33 33 H 1.08998 * 109.46912 * 184.99720 * 12 11 2 34 34 H 1.08998 * 109.47714 * 60.00389 * 14 13 12 35 35 H 1.09002 * 109.47557 * 299.99675 * 14 13 12 36 36 H 1.08994 * 109.46968 * 304.99934 * 15 14 13 37 37 H 1.09001 * 109.46874 * 185.00076 * 15 14 13 38 38 H 1.08994 * 109.47628 * 95.63975 * 17 16 15 39 39 H 1.09003 * 109.46866 * 215.63699 * 17 16 15 40 40 H 1.09004 * 109.47450 * 335.63299 * 17 16 15 41 41 H 1.07997 * 125.82684 * 180.21022 * 22 21 20 42 42 H 1.07998 * 126.42154 * 179.77763 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0928 1.2650 -0.5203 5 6 1.6316 2.2864 0.6687 6 7 0.5397 2.1623 1.3930 7 14 2.4840 3.9436 0.5406 8 1 3.6825 3.8181 -0.3272 9 1 1.5492 4.9371 -0.0464 10 1 2.8982 4.3932 1.8939 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7098 1.4432 13 8 1.2060 -1.9927 2.0822 14 6 1.3324 -2.4151 3.4414 15 6 -0.0567 -2.6880 4.0219 16 7 -0.6657 -3.8201 3.3194 17 6 -1.4848 -3.5874 2.1272 18 6 -0.4770 -5.0752 3.7729 19 8 0.2524 -5.2742 4.7253 20 6 -1.1548 -6.2065 3.1145 21 7 -1.8767 -6.1393 2.0161 22 6 -2.3275 -7.3553 1.7162 23 6 -1.8839 -8.2200 2.6615 24 7 -1.1464 -7.5042 3.5431 25 1 -0.6969 -7.8478 4.3309 26 1 -0.3633 -0.0879 1.0239 27 1 -0.3633 0.9306 -0.4359 28 1 -0.3633 -0.8428 -0.5880 29 1 0.1774 2.9315 1.8600 30 1 3.1500 -1.1386 -0.5134 31 1 1.6085 -2.0286 -0.5130 32 1 2.9642 -0.9123 1.9819 33 1 3.0733 -2.6058 1.4448 34 1 1.8206 -1.6319 4.0214 35 1 1.9301 -3.3256 3.4850 36 1 -0.6824 -1.8042 3.8978 37 1 0.0327 -2.9239 5.0824 38 1 -0.8714 -3.7120 1.2349 39 1 -2.3067 -4.3031 2.1058 40 1 -1.8859 -2.5742 2.1540 41 1 -2.9445 -7.6092 0.8670 42 1 -2.0812 -9.2810 2.7032 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489212864.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:43 Heat of formation + Delta-G solvation = -2.493664 kcal Electronic energy + Delta-G solvation = -24459.718633 eV Core-core repulsion = 20862.865328 eV Total energy + Delta-G solvation = -3596.853305 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.22506 -40.67837 -38.93366 -37.23024 -36.49474 -33.76109 -33.41773 -31.91891 -30.41060 -29.46034 -27.73319 -27.52702 -25.19524 -24.73006 -23.09043 -22.45895 -22.11219 -21.03045 -19.07352 -18.72052 -17.88852 -17.47547 -17.07498 -16.96861 -16.76648 -16.27767 -15.85371 -15.32069 -15.23210 -15.01919 -14.85598 -14.68024 -14.37090 -14.11828 -13.78406 -13.58874 -13.30843 -13.01209 -12.97741 -12.73846 -12.60800 -12.40883 -12.27482 -12.05062 -11.76873 -11.68705 -11.47781 -11.29840 -10.85330 -10.58268 -10.38390 -9.83310 -9.47832 -8.54676 -7.78904 -5.35325 0.31775 1.46780 1.48128 1.50556 1.58259 1.64838 2.31454 2.44867 2.52858 2.91873 3.20640 3.35580 3.80079 3.93526 4.09842 4.11918 4.36469 4.38899 4.42675 4.49928 4.53166 4.57189 4.61318 4.66727 4.76328 4.86230 4.98515 5.00659 5.04094 5.19629 5.22749 5.38291 5.39874 5.70135 5.73559 5.83402 6.18209 6.21824 6.43130 6.47985 6.72019 7.00819 7.23394 7.92140 8.44179 9.24808 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.028818 B = 0.003324 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.384996 B = 8420.892002 C = 8681.194691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.191 3.809 2 N -0.609 5.609 3 C -0.272 4.272 4 H 0.064 0.936 5 C -0.041 4.041 6 N -0.925 5.925 7 Si 0.964 3.036 8 H -0.267 1.267 9 H -0.291 1.291 10 H -0.292 1.292 11 C 0.151 3.849 12 C 0.054 3.946 13 O -0.380 6.380 14 C 0.051 3.949 15 C 0.126 3.874 16 N -0.579 5.579 17 C 0.090 3.910 18 C 0.595 3.405 19 O -0.579 6.579 20 C 0.110 3.890 21 N -0.453 5.453 22 C -0.055 4.055 23 C 0.008 3.992 24 N -0.519 5.519 25 H 0.438 0.562 26 H 0.003 0.997 27 H 0.014 0.986 28 H 0.015 0.985 29 H 0.247 0.753 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.021 0.979 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.041 0.959 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.046 0.954 39 H 0.111 0.889 40 H 0.063 0.937 41 H 0.203 0.797 42 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.674 -21.911 3.863 22.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.332 5.332 3 C -0.402 4.402 4 H 0.082 0.918 5 C -0.238 4.238 6 N -0.570 5.570 7 Si 0.792 3.208 8 H -0.191 1.191 9 H -0.217 1.217 10 H -0.219 1.219 11 C 0.024 3.976 12 C -0.025 4.025 13 O -0.299 6.299 14 C -0.027 4.027 15 C 0.004 3.996 16 N -0.309 5.309 17 C -0.052 4.052 18 C 0.383 3.617 19 O -0.460 6.460 20 C -0.149 4.149 21 N -0.177 5.177 22 C -0.207 4.207 23 C -0.132 4.132 24 N -0.121 5.121 25 H 0.279 0.721 26 H 0.021 0.979 27 H 0.033 0.967 28 H 0.034 0.966 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.040 0.960 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.110 0.890 37 H 0.122 0.878 38 H 0.065 0.935 39 H 0.129 0.871 40 H 0.082 0.918 41 H 0.220 0.780 42 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -5.696 -21.064 3.895 22.165 hybrid contribution 1.053 0.421 1.072 1.560 sum -4.643 -20.643 4.967 21.734 Atomic orbital electron populations 1.20354 0.82936 0.95496 0.96605 1.43956 1.02022 1.01183 1.86054 1.19468 1.05340 0.89222 1.26181 0.91846 1.26004 0.98698 1.02331 0.96719 1.70202 1.23381 1.29613 1.33816 0.85269 0.78332 0.80205 0.77001 1.19086 1.21739 1.21947 1.21045 0.96634 0.87523 0.92372 1.23194 0.85605 0.96882 0.96812 1.87947 1.30199 1.87368 1.24369 1.22804 0.97741 0.97679 0.84472 1.21613 0.92989 0.88379 0.96620 1.47506 1.49416 1.04847 1.29096 1.22205 0.95430 1.02588 0.84991 1.16856 0.80458 0.82114 0.82279 1.90776 1.40311 1.84913 1.29970 1.22214 1.08494 0.86305 0.97891 1.70339 1.10266 1.26167 1.10957 1.23241 1.06399 0.87868 1.03240 1.23798 0.97164 1.01005 0.91250 1.43036 1.38395 1.07062 1.23650 0.72107 0.97851 0.96674 0.96630 0.94380 0.91359 0.92600 0.96046 0.93364 0.93100 0.94106 0.88995 0.87755 0.93477 0.87116 0.91805 0.77991 0.74896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.86 8.65 127.77 1.11 10.97 16 2 N -0.61 -31.65 2.85 -726.94 -2.07 -33.72 16 3 C -0.27 -15.20 9.54 84.03 0.80 -14.40 16 4 H 0.06 3.46 7.83 -2.91 -0.02 3.43 16 5 C -0.04 -2.32 5.17 84.86 0.44 -1.88 16 6 N -0.93 -55.32 11.09 21.65 0.24 -55.08 16 7 Si 0.96 45.46 29.56 68.60 2.03 47.49 16 8 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 9 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 10 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 11 C 0.15 6.42 6.12 86.38 0.53 6.95 16 12 C 0.05 2.20 6.28 71.98 0.45 2.66 16 13 O -0.38 -15.67 9.34 -148.98 -1.39 -17.06 16 14 C 0.05 1.79 6.28 71.98 0.45 2.25 16 15 C 0.13 3.94 5.82 86.38 0.50 4.44 16 16 N -0.58 -17.78 2.84 -850.68 -2.41 -20.19 16 17 C 0.09 2.66 9.29 127.77 1.19 3.84 16 18 C 0.60 18.10 7.67 86.66 0.66 18.77 16 19 O -0.58 -19.55 16.71 -4.05 -0.07 -19.62 16 20 C 0.11 2.75 7.67 136.28 1.05 3.79 16 21 N -0.45 -10.94 7.67 -189.53 -1.45 -12.39 16 22 C -0.05 -0.87 11.85 83.88 0.99 0.12 16 23 C 0.01 0.08 12.01 83.52 1.00 1.09 16 24 N -0.52 -8.54 6.15 -188.02 -1.16 -9.70 16 25 H 0.44 5.43 8.96 -92.71 -0.83 4.60 16 26 H 0.00 0.18 7.60 -2.39 -0.02 0.16 16 27 H 0.01 0.81 7.23 -2.39 -0.02 0.80 16 28 H 0.02 0.70 7.96 -2.39 -0.02 0.68 16 29 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 30 H 0.07 2.71 8.04 -2.38 -0.02 2.69 16 31 H 0.06 2.21 7.94 -2.39 -0.02 2.19 16 32 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.09 2.92 7.85 -2.39 -0.02 2.90 16 37 H 0.10 2.98 7.47 -2.39 -0.02 2.96 16 38 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.11 3.02 5.28 -2.39 -0.01 3.01 16 40 H 0.06 1.92 7.83 -2.38 -0.02 1.90 16 41 H 0.20 1.97 8.06 -2.91 -0.02 1.94 16 42 H 0.23 0.05 8.06 -2.91 -0.02 0.02 16 Total: -1.00 -73.88 353.00 3.08 -70.80 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 0.19 Total: 10.88 kcal Atomic # 6 Polarization: 29.41 SS G_CDS: 9.18 Total: 38.59 kcal Atomic # 7 Polarization: -124.22 SS G_CDS: -6.85 Total: -131.08 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -1.46 Total: -36.68 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -73.88 3.08 -70.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489212864.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.308 kcal (2) G-P(sol) polarization free energy of solvation -73.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds