Wall clock time and date at job start Tue Mar 31 2020 03:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47395 * 2 1 4 4 C 1.53005 * 109.47418 * 120.00422 * 2 1 3 5 5 C 1.50702 * 109.47255 * 184.99893 * 4 2 1 6 6 O 1.21278 * 119.99742 * 359.97438 * 5 4 2 7 7 N 1.34774 * 119.99901 * 180.02562 * 5 4 2 8 8 C 1.47871 * 126.94500 * 359.97438 * 7 5 4 9 9 C 1.56019 * 105.10436 * 182.00607 * 8 7 5 10 10 H 1.09002 * 116.24915 * 158.83782 * 9 8 7 11 11 C 1.57086 * 99.60505 * 32.81049 * 9 8 7 12 12 C 1.49284 * 126.94390 * 180.02562 * 7 5 4 13 13 H 1.09001 * 116.79074 * 16.29887 * 12 7 5 14 14 C 1.56022 * 104.08997 * 246.69359 * 12 7 5 15 15 N 1.49071 * 105.20719 * 288.09353 * 14 12 7 16 16 C 1.36928 * 127.54602 * 182.03119 * 15 14 12 17 17 H 1.08001 * 120.00429 * 181.19338 * 16 15 14 18 18 C 1.38816 * 119.99872 * 1.19951 * 16 15 14 19 19 N 1.31617 * 120.00171 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99742 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47539 * 359.97438 * 20 18 16 22 22 H 1.48507 * 109.47377 * 119.99927 * 20 18 16 23 23 H 1.48505 * 109.47136 * 239.99433 * 20 18 16 24 24 N 1.46500 * 109.47034 * 240.00050 * 2 1 3 25 25 C 1.34778 * 120.00051 * 85.00002 * 24 2 1 26 26 N 1.34772 * 120.00281 * 180.02562 * 25 24 2 27 27 O 1.21596 * 119.99614 * 0.02562 * 25 24 2 28 28 H 1.09008 * 109.46704 * 299.99920 * 1 2 3 29 29 H 1.08997 * 109.47245 * 59.99413 * 1 2 3 30 30 H 1.08995 * 109.47269 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46666 * 64.99419 * 4 2 1 32 32 H 1.09003 * 109.46520 * 304.99508 * 4 2 1 33 33 H 1.09004 * 110.31012 * 63.09957 * 8 7 5 34 34 H 1.09006 * 110.31821 * 300.91531 * 8 7 5 35 35 H 1.08994 * 112.37121 * 64.27209 * 11 9 8 36 36 H 1.09002 * 112.36511 * 191.71430 * 11 9 8 37 37 H 1.08993 * 110.31538 * 47.67090 * 14 12 7 38 38 H 1.09007 * 110.31428 * 169.86301 * 14 12 7 39 39 H 0.97004 * 120.00340 * 180.02562 * 19 18 16 40 40 H 0.96998 * 120.00295 * 264.99770 * 24 2 1 41 41 H 0.97005 * 120.00157 * 0.02562 * 26 25 24 42 42 H 0.97006 * 120.00328 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5420 -0.6150 1.3126 6 8 4.1450 -0.0212 0.4440 7 7 4.2150 -1.1807 2.3341 8 6 3.6395 -1.9359 3.4677 9 6 4.8582 -2.3112 4.3667 10 1 4.6349 -2.5494 5.4066 11 6 5.7666 -1.0547 4.1147 12 6 5.6921 -1.1705 2.5504 13 1 6.2670 -0.4404 1.9807 14 6 6.1112 -2.6637 2.3799 15 7 5.5962 -3.3556 3.5957 16 6 5.7451 -4.6749 3.9310 17 1 5.3017 -5.0545 4.8397 18 6 6.4659 -5.5244 3.1030 19 7 7.0059 -5.0620 1.9953 20 14 6.6683 -7.3243 3.5601 21 1 5.9706 -7.5906 4.8435 22 1 6.0835 -8.1750 2.4925 23 1 8.1123 -7.6382 3.7077 24 7 2.0183 -0.6906 -1.1962 25 6 2.1470 -0.0182 -2.3572 26 7 2.5957 -0.6536 -3.4577 27 8 1.8582 1.1617 -2.4116 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.7516 -1.7716 1.2055 32 1 1.6054 -0.2618 2.1369 33 1 3.1425 -2.8371 3.1085 34 1 2.9386 -1.3114 4.0217 35 1 5.3137 -0.1346 4.4841 36 1 6.7795 -1.1925 4.4932 37 1 5.6645 -3.0814 1.4777 38 1 7.1972 -2.7498 2.3404 39 1 7.5093 -5.6557 1.4165 40 1 2.2490 -1.6317 -1.1527 41 1 2.8257 -1.5950 -3.4144 42 1 2.6880 -0.1698 -4.2934 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494653991.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:27 Heat of formation + Delta-G solvation = -39.928372 kcal Electronic energy + Delta-G solvation = -24916.789975 eV Core-core repulsion = 21318.313378 eV Total energy + Delta-G solvation = -3598.476596 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.60271 -40.85156 -39.37005 -36.64174 -35.38700 -34.71036 -33.35958 -31.86501 -30.76874 -30.16891 -28.67529 -26.93611 -25.18877 -23.54996 -22.17906 -21.49966 -21.36857 -20.00329 -19.27721 -18.77664 -18.16319 -17.83673 -17.27865 -16.73955 -16.32127 -16.16570 -15.83359 -15.59557 -15.24865 -14.91683 -14.65733 -13.97745 -13.87632 -13.60540 -13.37941 -13.31442 -13.05580 -12.97915 -12.81445 -12.75782 -12.68632 -12.29140 -12.09782 -11.99480 -11.94334 -11.81949 -11.49276 -11.39979 -10.89776 -10.70588 -10.64780 -9.91868 -9.45928 -8.88793 -7.83434 -5.18181 1.48220 1.49240 1.58899 1.74129 2.01825 2.05001 2.28170 2.49815 3.34294 3.39115 3.59110 3.64333 3.75108 3.85477 3.94931 4.05976 4.24130 4.24942 4.43757 4.58564 4.67078 4.68498 4.76891 4.83356 4.90797 4.99085 5.04977 5.07733 5.17397 5.28329 5.35093 5.47068 5.55819 5.62221 5.66127 5.89059 6.05886 6.09985 6.76293 7.02932 7.09060 7.27934 7.69654 7.71914 8.44396 9.28747 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.018365 B = 0.004127 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.266040 B = 6783.302222 C = 7387.388016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.174 3.826 3 H 0.060 0.940 4 C -0.131 4.131 5 C 0.516 3.484 6 O -0.587 6.587 7 N -0.610 5.610 8 C 0.092 3.908 9 C 0.132 3.868 10 H 0.133 0.867 11 C -0.132 4.132 12 C 0.100 3.900 13 H 0.106 0.894 14 C 0.188 3.812 15 N -0.617 5.617 16 C -0.225 4.225 17 H 0.097 0.903 18 C -0.071 4.071 19 N -0.958 5.958 20 Si 0.974 3.026 21 H -0.258 1.258 22 H -0.299 1.299 23 H -0.300 1.300 24 N -0.724 5.724 25 C 0.703 3.297 26 N -0.854 5.854 27 O -0.647 6.647 28 H 0.089 0.911 29 H 0.043 0.957 30 H 0.075 0.925 31 H 0.116 0.884 32 H 0.141 0.859 33 H 0.059 0.941 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.074 0.926 37 H -0.001 1.001 38 H 0.014 0.986 39 H 0.243 0.757 40 H 0.402 0.598 41 H 0.410 0.590 42 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.151 6.430 1.087 14.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.069 3.931 3 H 0.078 0.922 4 C -0.171 4.171 5 C 0.306 3.694 6 O -0.468 6.468 7 N -0.344 5.344 8 C -0.032 4.032 9 C 0.026 3.974 10 H 0.151 0.849 11 C -0.171 4.171 12 C -0.004 4.004 13 H 0.124 0.876 14 C 0.062 3.938 15 N -0.342 5.342 16 C -0.354 4.354 17 H 0.114 0.886 18 C -0.263 4.263 19 N -0.608 5.608 20 Si 0.803 3.197 21 H -0.182 1.182 22 H -0.227 1.227 23 H -0.228 1.228 24 N -0.379 5.379 25 C 0.401 3.599 26 N -0.423 5.423 27 O -0.530 6.530 28 H 0.108 0.892 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.134 0.866 32 H 0.159 0.841 33 H 0.078 0.922 34 H 0.125 0.875 35 H 0.119 0.881 36 H 0.093 0.907 37 H 0.017 0.983 38 H 0.032 0.968 39 H 0.052 0.948 40 H 0.236 0.764 41 H 0.240 0.760 42 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -13.082 7.500 0.653 15.094 hybrid contribution 1.204 -1.880 -0.902 2.408 sum -11.878 5.620 -0.249 13.143 Atomic orbital electron populations 1.22118 0.92713 1.03324 1.02885 1.20555 0.94622 0.95994 0.81961 0.92191 1.22035 0.89619 1.04783 1.00673 1.20968 0.91171 0.77571 0.79680 1.90707 1.71485 1.45170 1.39437 1.49336 1.07453 1.53055 1.24518 1.23215 0.97417 0.95303 0.87283 1.23593 0.90431 0.87287 0.96121 0.84914 1.24060 1.01105 0.99234 0.92705 1.24013 0.81880 0.96669 0.97791 0.87600 1.21696 0.95545 0.87985 0.88566 1.45765 1.61461 1.05414 1.21546 1.19575 1.26644 0.84042 1.05093 0.88551 1.25607 1.01073 1.02222 0.97400 1.70151 1.40801 1.35012 1.14828 0.85064 0.76749 0.80166 0.77699 1.18196 1.22666 1.22769 1.44992 1.70638 1.13660 1.08625 1.16141 0.77652 0.84425 0.81653 1.42807 1.72485 1.15537 1.11436 1.90881 1.60053 1.16404 1.85674 0.89195 0.93758 0.90624 0.86621 0.84094 0.92230 0.87525 0.88051 0.90713 0.98281 0.96817 0.94803 0.76353 0.76029 0.74916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.48 71.98 0.68 -2.02 16 2 C 0.17 4.19 2.14 44.99 0.10 4.29 16 3 H 0.06 1.89 7.39 -2.38 -0.02 1.87 16 4 C -0.13 -2.71 4.53 29.85 0.14 -2.58 16 5 C 0.52 16.41 7.76 87.66 0.68 17.09 16 6 O -0.59 -23.94 15.72 -3.02 -0.05 -23.98 16 7 N -0.61 -19.64 2.95 -768.41 -2.26 -21.91 16 8 C 0.09 2.48 6.03 87.16 0.53 3.00 16 9 C 0.13 4.20 5.48 46.92 0.26 4.46 16 10 H 0.13 3.52 8.14 -2.39 -0.02 3.50 16 11 C -0.13 -3.96 6.80 33.45 0.23 -3.73 16 12 C 0.10 3.72 5.23 46.92 0.25 3.97 16 13 H 0.11 4.05 8.08 -2.39 -0.02 4.03 16 14 C 0.19 9.01 4.82 86.93 0.42 9.43 16 15 N -0.62 -28.18 3.09 -645.36 -1.99 -30.17 16 16 C -0.22 -11.42 10.38 84.04 0.87 -10.54 16 17 H 0.10 4.51 7.83 -2.91 -0.02 4.48 16 18 C -0.07 -3.83 5.49 84.86 0.47 -3.36 16 19 N -0.96 -56.86 10.66 21.65 0.23 -56.63 16 20 Si 0.97 43.79 29.55 68.60 2.03 45.82 16 21 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 22 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 23 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 24 N -0.72 -18.69 4.22 -457.80 -1.93 -20.62 16 25 C 0.70 21.12 8.80 179.06 1.58 22.70 16 26 N -0.85 -18.08 8.88 -184.74 -1.64 -19.72 16 27 O -0.65 -25.12 16.84 -4.02 -0.07 -25.19 16 28 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.14 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16 35 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.00 -0.06 7.77 -2.39 -0.02 -0.08 16 38 H 0.01 0.76 7.45 -2.38 -0.02 0.74 16 39 H 0.24 14.22 8.31 -92.71 -0.77 13.45 16 40 H 0.40 9.00 8.62 -92.71 -0.80 8.20 16 41 H 0.41 6.46 8.84 -92.70 -0.82 5.64 16 42 H 0.42 7.71 8.93 -92.70 -0.83 6.88 16 Total: -1.00 -80.57 344.79 -0.89 -81.45 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: -1.39 Total: 28.24 kcal Atomic # 6 Polarization: 36.53 SS G_CDS: 6.18 Total: 42.71 kcal Atomic # 7 Polarization: -141.45 SS G_CDS: -7.60 Total: -149.05 kcal Atomic # 8 Polarization: -49.06 SS G_CDS: -0.12 Total: -49.17 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -80.57 -0.89 -81.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494653991.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.526 kcal (2) G-P(sol) polarization free energy of solvation -80.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds