Wall clock time and date at job start Tue Mar 31 2020 03:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47165 * 2 1 4 4 C 1.53003 * 109.46853 * 239.99792 * 2 1 3 5 5 C 1.50704 * 109.46684 * 174.99728 * 4 2 1 6 6 O 1.21283 * 120.00123 * 0.02562 * 5 4 2 7 7 N 1.34774 * 119.99724 * 180.02562 * 5 4 2 8 8 C 1.47867 * 126.94868 * 0.02736 * 7 5 4 9 9 C 1.56014 * 105.10762 * 182.02408 * 8 7 5 10 10 H 1.09003 * 116.25328 * 158.84068 * 9 8 7 11 11 C 1.57079 * 99.60961 * 32.80289 * 9 8 7 12 12 C 1.49296 * 126.94272 * 180.02562 * 7 5 4 13 13 H 1.08998 * 116.15377 * 16.67587 * 12 7 5 14 14 C 1.56021 * 104.08858 * 246.67833 * 12 7 5 15 15 N 1.49067 * 105.20585 * 288.09518 * 14 12 7 16 16 C 1.36934 * 127.54619 * 182.01630 * 15 14 12 17 17 H 1.07999 * 120.00235 * 175.17608 * 16 15 14 18 18 C 1.38816 * 119.99734 * 355.17246 * 16 15 14 19 19 N 1.31613 * 119.99884 * 6.47846 * 18 16 15 20 20 Si 1.86800 * 119.99917 * 186.47848 * 18 16 15 21 21 H 1.48502 * 109.47139 * 94.98306 * 20 18 16 22 22 H 1.48497 * 109.47222 * 214.98290 * 20 18 16 23 23 H 1.48495 * 109.47300 * 334.98507 * 20 18 16 24 24 N 1.46504 * 109.46886 * 120.00208 * 2 1 3 25 25 C 1.34773 * 120.00003 * 274.99890 * 24 2 1 26 26 N 1.34773 * 120.00493 * 180.02562 * 25 24 2 27 27 O 1.21595 * 120.00028 * 0.02562 * 25 24 2 28 28 H 1.09001 * 109.47222 * 299.99354 * 1 2 3 29 29 H 1.08993 * 109.47403 * 60.00369 * 1 2 3 30 30 H 1.09005 * 109.47194 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46763 * 55.00570 * 4 2 1 32 32 H 1.08995 * 109.47669 * 294.99903 * 4 2 1 33 33 H 1.09000 * 110.31218 * 63.11225 * 8 7 5 34 34 H 1.09006 * 110.31642 * 300.93118 * 8 7 5 35 35 H 1.09004 * 112.36735 * 64.27192 * 11 9 8 36 36 H 1.08993 * 112.37500 * 191.71761 * 11 9 8 37 37 H 1.09000 * 110.32160 * 47.67204 * 14 12 7 38 38 H 1.08996 * 110.31584 * 169.86021 * 14 12 7 39 39 H 0.97011 * 120.00065 * 179.97438 * 19 18 16 40 40 H 0.96998 * 120.00002 * 95.00478 * 24 2 1 41 41 H 0.97008 * 119.99343 * 0.02562 * 26 25 24 42 42 H 0.96996 * 120.00401 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6149 -1.3127 6 8 4.1450 -0.0211 -0.4441 7 7 4.2148 -1.1796 -2.3348 8 6 3.6393 -1.9338 -3.4690 9 6 4.8665 -2.3982 -4.3131 10 1 4.7020 -3.2476 -4.9762 11 6 5.9154 -2.6004 -3.1615 12 6 5.6921 -1.1701 -2.5507 13 1 6.3023 -0.9095 -1.6860 14 6 5.8826 -0.3055 -3.8353 15 7 5.3827 -1.1533 -4.9549 16 6 5.3741 -0.8516 -6.2906 17 1 5.0525 -1.5909 -7.0091 18 6 5.7788 0.4046 -6.7210 19 7 6.2903 1.2611 -5.8625 20 14 5.5972 0.8793 -8.5185 21 1 4.3213 1.6147 -8.7099 22 1 6.7337 1.7475 -8.9184 23 1 5.5923 -0.3467 -9.3562 24 7 2.0183 -0.6907 1.1962 25 6 2.1470 -0.0184 2.3572 26 7 2.5967 -0.6535 3.4575 27 8 1.8574 1.1613 2.4119 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.6054 -0.2617 -2.1369 32 1 1.7517 -1.7715 -1.2056 33 1 2.9933 -1.2881 -4.0639 34 1 3.0816 -2.7970 -3.1055 35 1 5.6276 -3.3952 -2.4732 36 1 6.9280 -2.7355 -3.5415 37 1 5.3061 0.6165 -3.7600 38 1 6.9384 -0.0813 -3.9874 39 1 6.5735 2.1389 -6.1633 40 1 2.2490 -1.6318 1.1526 41 1 2.8281 -1.5946 3.4137 42 1 2.6897 -0.1696 4.2929 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494654058.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:29 Heat of formation + Delta-G solvation = -12.038880 kcal Electronic energy + Delta-G solvation = -24830.532974 eV Core-core repulsion = 21233.265757 eV Total energy + Delta-G solvation = -3597.267217 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.26983 -39.66453 -37.98141 -35.54008 -33.68729 -33.60600 -31.75170 -30.76040 -29.24572 -28.57706 -27.62011 -25.22154 -23.60720 -22.43072 -20.90849 -20.31443 -19.86094 -18.54417 -18.23209 -17.25375 -17.12064 -16.29777 -15.81366 -15.55693 -15.08162 -14.71247 -14.48127 -14.10501 -13.96911 -13.49277 -13.29257 -12.87419 -12.64962 -12.21816 -12.04346 -11.94468 -11.78255 -11.67997 -11.34381 -11.05643 -10.99690 -10.89488 -10.80031 -10.61123 -10.29078 -10.18707 -10.09641 -9.67670 -9.66599 -9.42428 -8.94057 -8.72862 -8.01907 -6.95964 -5.81236 -3.14783 2.92931 3.05450 3.34399 3.35515 3.37773 3.40211 3.43412 4.38893 4.47382 4.71028 4.71608 5.03517 5.16104 5.16715 5.30380 5.39320 5.46596 5.53875 5.57121 5.61177 5.67203 5.72298 5.86523 6.00122 6.13045 6.17884 6.24960 6.37187 6.45868 6.55762 6.58316 6.65885 6.72775 6.91971 7.35674 7.46004 7.67481 8.00290 8.03680 8.09968 8.59755 8.71468 9.04470 9.67384 10.37574 11.31820 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.024130 B = 0.003697 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.087400 B = 7570.976367 C = 7847.444171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.176 3.824 3 H 0.097 0.903 4 C -0.146 4.146 5 C 0.522 3.478 6 O -0.544 6.544 7 N -0.608 5.608 8 C 0.083 3.917 9 C 0.140 3.860 10 H 0.104 0.896 11 C -0.152 4.152 12 C 0.099 3.901 13 H 0.112 0.888 14 C 0.172 3.828 15 N -0.597 5.597 16 C -0.234 4.234 17 H 0.081 0.919 18 C -0.004 4.004 19 N -0.916 5.916 20 Si 0.911 3.089 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.280 1.280 24 N -0.727 5.727 25 C 0.712 3.288 26 N -0.871 5.871 27 O -0.597 6.597 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.049 0.951 38 H 0.054 0.946 39 H 0.254 0.746 40 H 0.391 0.609 41 H 0.394 0.606 42 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.759 -10.914 12.057 18.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.070 3.930 3 H 0.115 0.885 4 C -0.186 4.186 5 C 0.310 3.690 6 O -0.422 6.422 7 N -0.342 5.342 8 C -0.043 4.043 9 C 0.031 3.969 10 H 0.122 0.878 11 C -0.191 4.191 12 C -0.003 4.003 13 H 0.130 0.870 14 C 0.048 3.952 15 N -0.321 5.321 16 C -0.362 4.362 17 H 0.099 0.901 18 C -0.201 4.201 19 N -0.562 5.562 20 Si 0.741 3.259 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.206 1.206 24 N -0.381 5.381 25 C 0.410 3.590 26 N -0.439 5.439 27 O -0.475 6.475 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.125 0.875 32 H 0.111 0.889 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.101 0.899 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.224 0.776 41 H 0.221 0.779 42 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -8.701 -9.308 12.242 17.669 hybrid contribution 0.148 -0.377 -0.761 0.862 sum -8.554 -9.685 11.481 17.285 Atomic orbital electron populations 1.22209 0.95100 1.01958 1.02859 1.20525 0.92907 0.97968 0.81582 0.88540 1.22012 0.93698 1.02943 0.99983 1.20085 0.89257 0.78842 0.80779 1.90718 1.70102 1.42682 1.38722 1.49265 1.08475 1.53492 1.22997 1.23284 0.98525 0.94654 0.87788 1.23149 0.90517 0.91472 0.91808 0.87770 1.24172 1.00956 0.95553 0.98440 1.24297 0.80235 0.97220 0.98576 0.87003 1.22102 0.99197 0.91763 0.82172 1.45495 1.69958 1.14286 1.02394 1.19034 1.39174 0.97109 0.80835 0.90081 1.24840 1.00898 0.96407 0.97958 1.69921 1.45839 1.07477 1.32979 0.86127 0.77355 0.78206 0.84210 1.21606 1.21752 1.20568 1.44934 1.71196 1.13120 1.08884 1.15861 0.77695 0.84823 0.80587 1.42957 1.73975 1.14731 1.12230 1.90946 1.57563 1.14329 1.84701 0.91777 0.91376 0.92592 0.87457 0.88935 0.91105 0.92873 0.91802 0.89866 0.93304 0.92815 0.93529 0.77579 0.77885 0.75712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 9.48 37.16 0.35 -1.33 16 2 C 0.18 2.26 2.13 -67.93 -0.15 2.11 16 3 H 0.10 1.61 7.39 -51.93 -0.38 1.23 16 4 C -0.15 -1.76 4.53 -27.88 -0.13 -1.89 16 5 C 0.52 8.77 7.76 -10.98 -0.09 8.68 16 6 O -0.54 -11.05 15.70 5.55 0.09 -10.97 16 7 N -0.61 -10.46 2.95 -156.75 -0.46 -10.93 16 8 C 0.08 1.30 6.02 -1.68 -0.01 1.29 16 9 C 0.14 2.46 5.47 -62.57 -0.34 2.12 16 10 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 11 C -0.15 -2.44 6.80 -22.28 -0.15 -2.60 16 12 C 0.10 1.86 5.24 -62.53 -0.33 1.53 16 13 H 0.11 2.08 8.06 -51.93 -0.42 1.66 16 14 C 0.17 4.07 4.82 -1.00 0.00 4.06 16 15 N -0.60 -14.00 3.08 -155.39 -0.48 -14.48 16 16 C -0.23 -6.10 10.37 -15.06 -0.16 -6.26 16 17 H 0.08 2.01 7.84 -52.49 -0.41 1.60 16 18 C 0.00 -0.10 5.49 -17.43 -0.10 -0.20 16 19 N -0.92 -26.55 10.70 55.49 0.59 -25.96 16 20 Si 0.91 21.45 29.56 -169.99 -5.02 16.43 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 N -0.73 -8.72 4.22 -58.67 -0.25 -8.96 16 25 C 0.71 9.96 8.80 -86.92 -0.77 9.20 16 26 N -0.87 -8.03 8.88 27.63 0.25 -7.79 16 27 O -0.60 -11.16 16.84 5.28 0.09 -11.07 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.05 1.34 7.65 -51.93 -0.40 0.94 16 38 H 0.05 1.40 7.60 -51.93 -0.39 1.01 16 39 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 40 H 0.39 3.66 8.62 -40.82 -0.35 3.31 16 41 H 0.39 2.38 8.84 -40.82 -0.36 2.02 16 42 H 0.41 3.34 8.93 -40.82 -0.36 2.98 16 LS Contribution 344.84 15.07 5.20 5.20 Total: -1.00 -35.36 344.84 -8.30 -43.66 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -6.45 Total: 8.14 kcal Atomic # 6 Polarization: 18.59 SS G_CDS: -1.86 Total: 16.73 kcal Atomic # 7 Polarization: -67.77 SS G_CDS: -0.35 Total: -68.12 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: 0.18 Total: -22.04 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.36 -8.30 -43.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494654058.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.624 kcal (2) G-P(sol) polarization free energy of solvation -35.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds