Wall clock time and date at job start Tue Mar 31 2020 03:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47165 * 2 1 4 4 C 1.53003 * 109.46853 * 239.99792 * 2 1 3 5 5 C 1.50704 * 109.46684 * 174.99728 * 4 2 1 6 6 O 1.21283 * 120.00123 * 0.02562 * 5 4 2 7 7 N 1.34774 * 119.99724 * 180.02562 * 5 4 2 8 8 C 1.47867 * 126.94868 * 0.02736 * 7 5 4 9 9 C 1.56014 * 105.10762 * 182.02408 * 8 7 5 10 10 H 1.09003 * 116.25328 * 158.84068 * 9 8 7 11 11 C 1.57079 * 99.60961 * 32.80289 * 9 8 7 12 12 C 1.49296 * 126.94272 * 180.02562 * 7 5 4 13 13 H 1.08998 * 116.15377 * 16.67587 * 12 7 5 14 14 C 1.56021 * 104.08858 * 246.67833 * 12 7 5 15 15 N 1.49067 * 105.20585 * 288.09518 * 14 12 7 16 16 C 1.36934 * 127.54619 * 182.01630 * 15 14 12 17 17 H 1.07999 * 120.00235 * 175.17608 * 16 15 14 18 18 C 1.38816 * 119.99734 * 355.17246 * 16 15 14 19 19 N 1.31613 * 119.99884 * 6.47846 * 18 16 15 20 20 Si 1.86800 * 119.99917 * 186.47848 * 18 16 15 21 21 H 1.48502 * 109.47139 * 94.98306 * 20 18 16 22 22 H 1.48497 * 109.47222 * 214.98290 * 20 18 16 23 23 H 1.48495 * 109.47300 * 334.98507 * 20 18 16 24 24 N 1.46504 * 109.46886 * 120.00208 * 2 1 3 25 25 C 1.34773 * 120.00003 * 274.99890 * 24 2 1 26 26 N 1.34773 * 120.00493 * 180.02562 * 25 24 2 27 27 O 1.21595 * 120.00028 * 0.02562 * 25 24 2 28 28 H 1.09001 * 109.47222 * 299.99354 * 1 2 3 29 29 H 1.08993 * 109.47403 * 60.00369 * 1 2 3 30 30 H 1.09005 * 109.47194 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46763 * 55.00570 * 4 2 1 32 32 H 1.08995 * 109.47669 * 294.99903 * 4 2 1 33 33 H 1.09000 * 110.31218 * 63.11225 * 8 7 5 34 34 H 1.09006 * 110.31642 * 300.93118 * 8 7 5 35 35 H 1.09004 * 112.36735 * 64.27192 * 11 9 8 36 36 H 1.08993 * 112.37500 * 191.71761 * 11 9 8 37 37 H 1.09000 * 110.32160 * 47.67204 * 14 12 7 38 38 H 1.08996 * 110.31584 * 169.86021 * 14 12 7 39 39 H 0.97011 * 120.00065 * 179.97438 * 19 18 16 40 40 H 0.96998 * 120.00002 * 95.00478 * 24 2 1 41 41 H 0.97008 * 119.99343 * 0.02562 * 26 25 24 42 42 H 0.96996 * 120.00401 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6149 -1.3127 6 8 4.1450 -0.0211 -0.4441 7 7 4.2148 -1.1796 -2.3348 8 6 3.6393 -1.9338 -3.4690 9 6 4.8665 -2.3982 -4.3131 10 1 4.7020 -3.2476 -4.9762 11 6 5.9154 -2.6004 -3.1615 12 6 5.6921 -1.1701 -2.5507 13 1 6.3023 -0.9095 -1.6860 14 6 5.8826 -0.3055 -3.8353 15 7 5.3827 -1.1533 -4.9549 16 6 5.3741 -0.8516 -6.2906 17 1 5.0525 -1.5909 -7.0091 18 6 5.7788 0.4046 -6.7210 19 7 6.2903 1.2611 -5.8625 20 14 5.5972 0.8793 -8.5185 21 1 4.3213 1.6147 -8.7099 22 1 6.7337 1.7475 -8.9184 23 1 5.5923 -0.3467 -9.3562 24 7 2.0183 -0.6907 1.1962 25 6 2.1470 -0.0184 2.3572 26 7 2.5967 -0.6535 3.4575 27 8 1.8574 1.1613 2.4119 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.6054 -0.2617 -2.1369 32 1 1.7517 -1.7715 -1.2056 33 1 2.9933 -1.2881 -4.0639 34 1 3.0816 -2.7970 -3.1055 35 1 5.6276 -3.3952 -2.4732 36 1 6.9280 -2.7355 -3.5415 37 1 5.3061 0.6165 -3.7600 38 1 6.9384 -0.0813 -3.9874 39 1 6.5735 2.1389 -6.1633 40 1 2.2490 -1.6318 1.1526 41 1 2.8281 -1.5946 3.4137 42 1 2.6897 -0.1696 4.2929 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494654058.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:29 Heat of formation + Delta-G solvation = -40.624952 kcal Electronic energy + Delta-G solvation = -24831.772559 eV Core-core repulsion = 21233.265757 eV Total energy + Delta-G solvation = -3598.506802 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.60415 -40.84127 -39.37048 -36.65015 -35.39289 -34.70462 -33.37129 -31.85656 -30.76662 -30.17398 -28.68661 -26.94278 -25.19755 -23.55313 -22.18045 -21.52503 -21.36846 -19.99592 -19.28352 -18.78771 -18.11872 -17.83745 -17.31091 -16.71295 -16.38462 -16.11376 -15.77113 -15.64364 -15.24111 -14.88193 -14.73305 -13.94530 -13.86893 -13.60766 -13.40839 -13.30548 -13.07748 -12.96285 -12.86845 -12.77476 -12.67634 -12.29777 -12.09097 -12.01681 -11.96063 -11.82619 -11.50765 -11.39237 -10.88985 -10.69409 -10.64012 -9.90055 -9.46420 -8.89171 -7.85718 -5.19787 1.47020 1.48281 1.57212 1.72138 2.01789 2.06546 2.30865 2.48941 3.32279 3.38779 3.59959 3.66830 3.74528 3.86131 3.95137 4.05471 4.22230 4.24874 4.42570 4.59440 4.65922 4.69897 4.76941 4.82699 4.90945 4.98989 5.05318 5.07971 5.17902 5.29131 5.33263 5.46541 5.55443 5.62810 5.64695 5.94761 6.08094 6.08984 6.76062 7.00844 7.17493 7.27484 7.71002 7.74006 8.43603 9.26686 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.024130 B = 0.003697 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.087400 B = 7570.976367 C = 7847.444171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.176 3.824 3 H 0.046 0.954 4 C -0.130 4.130 5 C 0.515 3.485 6 O -0.587 6.587 7 N -0.611 5.611 8 C 0.091 3.909 9 C 0.132 3.868 10 H 0.135 0.865 11 C -0.128 4.128 12 C 0.102 3.898 13 H 0.108 0.892 14 C 0.184 3.816 15 N -0.618 5.618 16 C -0.227 4.227 17 H 0.098 0.902 18 C -0.072 4.072 19 N -0.958 5.958 20 Si 0.974 3.026 21 H -0.292 1.292 22 H -0.304 1.304 23 H -0.259 1.259 24 N -0.717 5.717 25 C 0.701 3.299 26 N -0.850 5.850 27 O -0.653 6.653 28 H 0.043 0.957 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.117 0.883 32 H 0.140 0.860 33 H 0.053 0.947 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.074 0.926 37 H -0.004 1.004 38 H 0.011 0.989 39 H 0.242 0.758 40 H 0.408 0.592 41 H 0.412 0.588 42 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.801 -15.090 12.006 22.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.069 3.931 3 H 0.064 0.936 4 C -0.170 4.170 5 C 0.306 3.694 6 O -0.468 6.468 7 N -0.344 5.344 8 C -0.033 4.033 9 C 0.025 3.975 10 H 0.152 0.848 11 C -0.167 4.167 12 C -0.002 4.002 13 H 0.126 0.874 14 C 0.059 3.941 15 N -0.343 5.343 16 C -0.356 4.356 17 H 0.116 0.884 18 C -0.265 4.265 19 N -0.607 5.607 20 Si 0.803 3.197 21 H -0.220 1.220 22 H -0.232 1.232 23 H -0.183 1.183 24 N -0.372 5.372 25 C 0.399 3.601 26 N -0.419 5.419 27 O -0.535 6.535 28 H 0.062 0.938 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.135 0.865 32 H 0.158 0.842 33 H 0.072 0.928 34 H 0.130 0.870 35 H 0.125 0.875 36 H 0.093 0.907 37 H 0.014 0.986 38 H 0.029 0.971 39 H 0.051 0.949 40 H 0.243 0.757 41 H 0.243 0.757 42 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -10.767 -13.622 12.195 21.218 hybrid contribution 0.821 0.870 -0.702 1.387 sum -9.946 -12.751 11.493 19.840 Atomic orbital electron populations 1.22109 0.92746 1.03752 1.02420 1.20444 0.94592 0.95670 0.82367 0.93578 1.22010 0.89567 1.05728 0.99714 1.20959 0.91115 0.77485 0.79853 1.90708 1.71413 1.44211 1.40473 1.49349 1.07577 1.53840 1.23624 1.23221 0.97363 0.95892 0.86815 1.23608 0.91591 0.89865 0.92398 0.84788 1.24059 1.00251 0.94410 0.97961 1.24050 0.82029 0.98066 0.96068 0.87413 1.21703 0.95680 0.91324 0.85434 1.45754 1.70415 1.16409 1.01711 1.19547 1.36416 0.96988 0.82605 0.88412 1.25669 1.02044 0.97017 1.01748 1.70170 1.48344 1.07426 1.34751 0.85109 0.76272 0.78148 0.80146 1.21980 1.23172 1.18279 1.44794 1.70653 1.13717 1.08053 1.16195 0.77730 0.84369 0.81817 1.42736 1.72387 1.15591 1.11197 1.90907 1.60004 1.16946 1.85686 0.93757 0.90365 0.89528 0.86474 0.84250 0.92824 0.87025 0.87517 0.90708 0.98612 0.97122 0.94862 0.75657 0.75703 0.74985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.48 71.98 0.68 -2.11 16 2 C 0.18 4.29 2.13 44.99 0.10 4.38 16 3 H 0.05 1.61 7.39 -2.39 -0.02 1.59 16 4 C -0.13 -2.73 4.53 29.85 0.14 -2.60 16 5 C 0.52 16.50 7.76 87.66 0.68 17.18 16 6 O -0.59 -24.04 15.70 -3.04 -0.05 -24.09 16 7 N -0.61 -19.71 2.95 -768.24 -2.26 -21.97 16 8 C 0.09 2.47 6.02 87.16 0.53 3.00 16 9 C 0.13 4.17 5.47 46.93 0.26 4.43 16 10 H 0.13 3.49 8.14 -2.39 -0.02 3.47 16 11 C -0.13 -3.70 6.80 33.48 0.23 -3.47 16 12 C 0.10 3.76 5.24 46.94 0.25 4.01 16 13 H 0.11 4.06 8.06 -2.39 -0.02 4.04 16 14 C 0.18 9.11 4.82 86.93 0.42 9.53 16 15 N -0.62 -28.82 3.08 -645.53 -1.99 -30.81 16 16 C -0.23 -11.77 10.37 84.03 0.87 -10.90 16 17 H 0.10 4.64 7.84 -2.91 -0.02 4.62 16 18 C -0.07 -4.03 5.49 84.86 0.47 -3.56 16 19 N -0.96 -58.72 10.70 21.65 0.23 -58.48 16 20 Si 0.97 44.93 29.56 68.60 2.03 46.96 16 21 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 22 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 23 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 24 N -0.72 -15.99 4.22 -457.81 -1.93 -17.92 16 25 C 0.70 19.32 8.80 179.06 1.58 20.90 16 26 N -0.85 -14.48 8.88 -184.75 -1.64 -16.12 16 27 O -0.65 -25.23 16.84 -4.02 -0.07 -25.29 16 28 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.14 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.11 1.86 8.14 -2.38 -0.02 1.84 16 35 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.00 -0.26 7.65 -2.39 -0.02 -0.28 16 38 H 0.01 0.60 7.60 -2.39 -0.02 0.58 16 39 H 0.24 14.72 8.31 -92.70 -0.77 13.95 16 40 H 0.41 6.26 8.62 -92.71 -0.80 5.46 16 41 H 0.41 3.96 8.84 -92.70 -0.82 3.14 16 42 H 0.42 6.34 8.93 -92.71 -0.83 5.51 16 Total: -1.00 -85.41 344.84 -0.89 -86.30 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -1.39 Total: 20.65 kcal Atomic # 6 Polarization: 34.60 SS G_CDS: 6.18 Total: 40.78 kcal Atomic # 7 Polarization: -137.71 SS G_CDS: -7.60 Total: -145.31 kcal Atomic # 8 Polarization: -49.27 SS G_CDS: -0.12 Total: -49.38 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -85.41 -0.89 -86.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494654058.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.672 kcal (2) G-P(sol) polarization free energy of solvation -85.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds