Wall clock time and date at job start Tue Mar 31 2020 03:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40084 * 126.03058 * 2 1 4 4 C 1.30842 * 108.20250 * 179.73948 * 3 2 1 5 5 C 1.39868 * 108.20327 * 0.44521 * 4 3 2 6 6 C 1.34941 * 126.04014 * 180.02562 * 2 1 3 7 7 C 1.50696 * 126.13067 * 359.97438 * 6 2 1 8 8 C 1.53005 * 109.47260 * 265.00771 * 7 6 2 9 9 C 1.50696 * 109.47260 * 179.97438 * 8 7 6 10 10 O 1.21282 * 119.99856 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00298 * 179.97438 * 9 8 7 12 12 C 1.46499 * 120.00413 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47033 * 180.02562 * 12 11 9 14 14 H 1.08989 * 109.47377 * 60.00407 * 13 12 11 15 15 O 1.42903 * 109.47128 * 299.99595 * 13 12 11 16 16 C 1.53006 * 109.46743 * 180.02562 * 13 12 11 17 17 N 1.46497 * 109.46938 * 184.99863 * 16 13 12 18 18 C 1.36936 * 120.00247 * 180.02562 * 17 16 13 19 19 H 1.08006 * 119.99508 * 359.97438 * 18 17 16 20 20 C 1.38805 * 120.00452 * 179.97438 * 18 17 16 21 21 N 1.31619 * 120.00210 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00291 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46808 * 90.00064 * 22 20 18 24 24 H 1.48498 * 109.47041 * 210.00186 * 22 20 18 25 25 H 1.48501 * 109.46968 * 330.00102 * 22 20 18 26 26 H 1.08994 * 109.47427 * 269.96961 * 1 2 3 27 27 H 1.08999 * 109.47247 * 29.97548 * 1 2 3 28 28 H 1.09007 * 109.46720 * 149.97509 * 1 2 3 29 29 H 1.08007 * 125.90122 * 180.26287 * 4 3 2 30 30 H 1.08002 * 126.04477 * 179.82088 * 5 4 3 31 31 H 1.09002 * 109.46733 * 25.00405 * 7 6 2 32 32 H 1.08998 * 109.47609 * 145.00695 * 7 6 2 33 33 H 1.09002 * 109.46948 * 299.99502 * 8 7 6 34 34 H 1.08995 * 109.47549 * 59.99195 * 8 7 6 35 35 H 0.97005 * 119.99960 * 0.02562 * 11 9 8 36 36 H 1.09002 * 109.46998 * 300.00241 * 12 11 9 37 37 H 1.09004 * 109.47124 * 60.00004 * 12 11 9 38 38 H 0.96695 * 114.00169 * 300.00600 * 15 13 12 39 39 H 1.08996 * 109.47371 * 304.99999 * 16 13 12 40 40 H 1.08997 * 109.47019 * 65.00080 * 16 13 12 41 41 H 0.97004 * 120.00062 * 359.97438 * 17 16 13 42 42 H 0.96994 * 120.00696 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1329 0.0000 4 6 3.5346 0.7323 0.0057 5 6 3.5438 -0.6663 -0.0009 6 6 2.2589 -1.0911 -0.0005 7 6 1.7975 -2.5257 -0.0006 8 6 1.7614 -3.0500 1.4364 9 6 1.2994 -4.4844 1.4363 10 8 1.0255 -5.0332 0.3901 11 7 1.1905 -5.1574 2.5989 12 6 0.7408 -6.5516 2.5990 13 6 0.7048 -7.0758 4.0359 14 1 0.0156 -6.4719 4.6259 15 8 2.0136 -6.9975 4.6045 16 6 0.2358 -8.5322 4.0358 17 7 0.0868 -8.9973 5.4170 18 6 -0.3253 -10.2790 5.6673 19 1 -0.5408 -10.9469 4.8463 20 6 -0.4660 -10.7198 6.9759 21 7 -0.2029 -9.9061 7.9764 22 14 -1.0289 -12.4681 7.3172 23 1 0.1547 -13.3606 7.4063 24 1 -1.7753 -12.5061 8.6004 25 1 -1.9133 -12.9272 6.2162 26 1 -0.3634 -0.0005 1.0276 27 1 -0.3634 0.8902 -0.5134 28 1 -0.3633 -0.8898 -0.5143 29 1 4.4053 1.3713 0.0112 30 1 4.4212 -1.2961 -0.0013 31 1 0.7995 -2.5863 -0.4346 32 1 2.4874 -3.1293 -0.5903 33 1 2.7594 -2.9894 1.8704 34 1 1.0715 -2.4464 2.0262 35 1 1.4092 -4.7183 3.4358 36 1 -0.2576 -6.6114 2.1656 37 1 1.4299 -7.1557 2.0086 38 1 2.6802 -7.5122 4.1295 39 1 -0.7229 -8.6052 3.5224 40 1 0.9713 -9.1508 3.5216 41 1 0.2807 -8.3975 6.1543 42 1 -0.3008 -10.2142 8.8909 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496992228.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:39 Heat of formation + Delta-G solvation = -36.200780 kcal Electronic energy + Delta-G solvation = -22723.322580 eV Core-core repulsion = 19125.007624 eV Total energy + Delta-G solvation = -3598.314956 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.18806 -40.79747 -38.94835 -36.09300 -35.28701 -35.07234 -33.87017 -33.20004 -31.05710 -29.96467 -27.59124 -27.26092 -25.50039 -24.05558 -22.74951 -22.07185 -21.30044 -20.53452 -19.25233 -18.42114 -17.85438 -17.28300 -17.17536 -16.58811 -16.46643 -16.35727 -16.06534 -15.48904 -15.26389 -14.94912 -14.91985 -14.51739 -14.31077 -14.07706 -13.77464 -13.68315 -13.34111 -13.23028 -13.13949 -12.97806 -12.94418 -12.75470 -12.16114 -12.12029 -11.96981 -11.80673 -11.56094 -11.17084 -10.98590 -10.81231 -10.22288 -10.10112 -9.45349 -9.01568 -7.95480 -5.24962 0.88695 1.47774 1.49396 1.57854 1.64058 1.65417 1.88944 2.19082 2.56207 3.35790 3.45180 3.56509 3.62067 3.73479 3.90632 3.98168 4.03367 4.16440 4.22751 4.36101 4.38192 4.44002 4.54337 4.63651 4.65058 4.67690 4.76950 4.84920 4.91126 4.94304 5.05866 5.22480 5.29293 5.40319 5.48171 5.76369 6.10927 6.25865 6.54792 6.76945 6.81081 7.24397 7.32935 8.08423 8.31094 9.27679 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.042023 B = 0.002019 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.148380 B =13866.903840 C =13950.059638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.379 5.379 3 N -0.339 5.339 4 C 0.040 3.960 5 C -0.282 4.282 6 C 0.084 3.916 7 C -0.034 4.034 8 C -0.123 4.123 9 C 0.513 3.487 10 O -0.584 6.584 11 N -0.714 5.714 12 C 0.102 3.898 13 C 0.108 3.892 14 H 0.100 0.900 15 O -0.563 6.563 16 C 0.121 3.879 17 N -0.740 5.740 18 C -0.248 4.248 19 H 0.077 0.923 20 C -0.076 4.076 21 N -0.968 5.968 22 Si 0.975 3.025 23 H -0.287 1.287 24 H -0.295 1.295 25 H -0.269 1.269 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.102 0.898 29 H 0.206 0.794 30 H 0.163 0.837 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.415 0.585 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.385 0.615 39 H 0.033 0.967 40 H 0.031 0.969 41 H 0.376 0.624 42 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.578 20.156 -16.860 26.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.162 5.162 3 N -0.161 5.161 4 C -0.145 4.145 5 C -0.311 4.311 6 C -0.044 4.044 7 C -0.074 4.074 8 C -0.163 4.163 9 C 0.301 3.699 10 O -0.464 6.464 11 N -0.366 5.366 12 C -0.023 4.023 13 C 0.048 3.952 14 H 0.118 0.882 15 O -0.369 6.369 16 C -0.006 4.006 17 N -0.383 5.383 18 C -0.380 4.380 19 H 0.094 0.906 20 C -0.269 4.269 21 N -0.618 5.618 22 Si 0.804 3.196 23 H -0.214 1.214 24 H -0.222 1.222 25 H -0.194 1.194 26 H 0.105 0.895 27 H 0.111 0.889 28 H 0.121 0.879 29 H 0.223 0.777 30 H 0.181 0.819 31 H 0.100 0.900 32 H 0.114 0.886 33 H 0.136 0.864 34 H 0.127 0.873 35 H 0.252 0.748 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.234 0.766 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.209 0.791 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 4.055 21.004 -17.238 27.473 hybrid contribution 0.562 -1.640 0.691 1.866 sum 4.617 19.364 -16.547 25.886 Atomic orbital electron populations 1.22136 0.73043 1.05504 1.04585 1.48795 1.07529 1.03166 1.56726 1.77326 1.02974 1.09237 1.26556 1.24331 0.95454 0.95849 0.98816 1.21599 0.96956 0.95214 1.17367 1.21266 0.91582 0.90509 1.01063 1.19902 1.03466 0.87246 0.96769 1.21563 1.05435 0.90848 0.98467 1.21050 0.76546 0.89374 0.82887 1.90710 1.51764 1.71229 1.32694 1.45860 1.67831 1.12915 1.09956 1.21814 1.01132 0.82840 0.96540 1.22092 0.85299 0.95146 0.92656 0.88244 1.86557 1.18529 1.73622 1.58242 1.21428 0.98609 0.93782 0.86787 1.42429 1.81240 1.12008 1.02656 1.19645 1.36116 0.90201 0.92047 0.90553 1.25604 1.03486 1.02206 0.95585 1.69826 1.56947 1.36785 0.98273 0.85123 0.77726 0.79727 0.77059 1.21386 1.22201 1.19374 0.89497 0.88892 0.87925 0.77730 0.81896 0.89976 0.88625 0.86369 0.87277 0.74797 0.90718 0.90915 0.76596 0.94900 0.95148 0.79142 0.93981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.91 11.27 127.77 1.44 2.35 16 2 N -0.38 -6.54 4.01 -356.04 -1.43 -7.97 16 3 N -0.34 -7.07 12.58 -57.02 -0.72 -7.79 16 4 C 0.04 0.66 12.03 85.23 1.02 1.69 16 5 C -0.28 -4.35 10.72 21.99 0.24 -4.12 16 6 C 0.08 1.32 6.19 41.41 0.26 1.58 16 7 C -0.03 -0.46 4.79 29.85 0.14 -0.32 16 8 C -0.12 -1.47 5.68 29.85 0.17 -1.30 16 9 C 0.51 9.81 7.83 87.66 0.69 10.50 16 10 O -0.58 -15.79 15.98 -3.04 -0.05 -15.84 16 11 N -0.71 -13.13 5.45 -463.06 -2.52 -15.65 16 12 C 0.10 2.29 5.34 86.38 0.46 2.75 16 13 C 0.11 2.99 3.09 30.60 0.09 3.09 16 14 H 0.10 2.89 8.14 -2.39 -0.02 2.88 16 15 O -0.56 -15.97 13.03 -148.98 -1.94 -17.91 16 16 C 0.12 4.43 5.90 86.38 0.51 4.94 16 17 N -0.74 -36.67 5.55 -343.46 -1.91 -38.58 16 18 C -0.25 -13.70 9.99 84.03 0.84 -12.86 16 19 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 20 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 21 N -0.97 -59.14 13.06 21.65 0.28 -58.85 16 22 Si 0.97 45.73 29.55 68.60 2.03 47.76 16 23 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 24 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 25 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 26 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.10 0.74 6.98 -2.38 -0.02 0.72 16 29 H 0.21 2.04 8.06 -2.91 -0.02 2.02 16 30 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 31 H 0.08 1.13 6.90 -2.39 -0.02 1.11 16 32 H 0.10 1.39 8.10 -2.39 -0.02 1.37 16 33 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.42 6.33 8.35 -92.70 -0.77 5.55 16 36 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.39 8.83 9.04 -74.06 -0.67 8.16 16 39 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.38 20.20 7.67 -92.71 -0.71 19.49 16 42 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -75.90 361.41 -1.03 -76.93 By element: Atomic # 1 Polarization: 34.60 SS G_CDS: -1.10 Total: 33.50 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 6.33 Total: 4.39 kcal Atomic # 7 Polarization: -122.54 SS G_CDS: -6.29 Total: -128.84 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -1.99 Total: -33.74 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -75.90 -1.03 -76.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496992228.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.731 kcal (2) G-P(sol) polarization free energy of solvation -75.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds