Wall clock time and date at job start Tue Mar 31 2020 03:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47845 * 2 1 4 4 C 1.53006 * 109.47264 * 120.00218 * 2 1 3 5 5 C 1.50696 * 109.46891 * 294.99829 * 4 2 1 6 6 C 1.34671 * 126.59320 * 85.02141 * 5 4 2 7 7 N 1.34131 * 108.02168 * 179.97438 * 6 5 4 8 8 C 1.30491 * 109.25475 * 0.02562 * 7 6 5 9 9 N 1.35048 * 108.70236 * 359.76792 * 8 7 6 10 10 H 0.97002 * 126.39844 * 180.27444 * 9 8 7 11 11 C 1.50704 * 109.47022 * 239.99563 * 2 1 3 12 12 O 1.21276 * 120.00499 * 240.00267 * 11 2 1 13 13 N 1.34783 * 119.99567 * 60.00417 * 11 2 1 14 14 C 1.46497 * 119.99638 * 179.97438 * 13 11 2 15 15 C 1.53001 * 109.46900 * 180.02562 * 14 13 11 16 16 H 1.08999 * 109.47164 * 60.00014 * 15 14 13 17 17 O 1.42903 * 109.47171 * 299.99748 * 15 14 13 18 18 C 1.53003 * 109.47376 * 180.02562 * 15 14 13 19 19 N 1.46494 * 109.47283 * 185.00021 * 18 15 14 20 20 C 1.36937 * 120.00022 * 179.97438 * 19 18 15 21 21 H 1.08002 * 120.00269 * 0.02562 * 20 19 18 22 22 C 1.38819 * 120.00106 * 179.97438 * 20 19 18 23 23 N 1.31616 * 119.99813 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99927 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46930 * 60.00673 * 24 22 20 26 26 H 1.48496 * 109.46947 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47190 * 300.00622 * 24 22 20 28 28 H 1.09001 * 109.47500 * 300.00131 * 1 2 3 29 29 H 1.08997 * 109.47131 * 59.99878 * 1 2 3 30 30 H 1.08998 * 109.47845 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46956 * 54.99661 * 4 2 1 32 32 H 1.08996 * 109.47450 * 174.99706 * 4 2 1 33 33 H 1.08002 * 125.99152 * 359.96502 * 6 5 4 34 34 H 1.08004 * 125.65413 * 180.02562 * 8 7 6 35 35 H 0.96996 * 120.00052 * 0.02562 * 13 11 2 36 36 H 1.08999 * 109.47200 * 60.00094 * 14 13 11 37 37 H 1.08997 * 109.47487 * 300.00148 * 14 13 11 38 38 H 0.96700 * 114.00311 * 300.00378 * 17 15 14 39 39 H 1.09005 * 109.46682 * 304.99749 * 18 15 14 40 40 H 1.08999 * 109.47221 * 64.99915 * 18 15 14 41 41 H 0.96999 * 120.00388 * 359.97438 * 19 18 15 42 42 H 0.96997 * 120.00150 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4766 6 6 0.4666 -0.0213 3.1304 7 7 0.5107 0.8297 4.1662 8 6 1.6679 1.4327 4.1788 9 7 2.4055 0.9758 3.1439 10 1 3.3079 1.2487 2.9155 11 6 2.0323 -0.7105 -1.2304 12 8 2.7294 -1.6966 -1.1192 13 7 1.7066 -0.2500 -2.4546 14 6 2.1954 -0.9404 -3.6507 15 6 1.6859 -0.2188 -4.9000 16 1 2.0492 0.8089 -4.8996 17 8 0.2568 -0.2188 -4.9005 18 6 2.1957 -0.9401 -6.1493 19 7 1.8086 -0.1832 -7.3423 20 6 2.1581 -0.6388 -8.5855 21 1 2.7188 -1.5564 -8.6864 22 6 1.7909 0.0781 -9.7161 23 7 1.1072 1.1960 -9.5931 24 14 2.2683 -0.5431 -11.4118 25 1 1.6762 -1.8872 -11.6314 26 1 1.7610 0.3963 -12.4439 27 1 3.7475 -0.6320 -11.5081 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3635 -1.0276 0.0005 31 1 1.6053 -1.7198 1.2951 32 1 3.1263 -0.7996 1.2056 33 1 -0.3653 -0.6576 2.8668 34 1 1.9850 2.1714 4.9000 35 1 1.1494 0.5389 -2.5436 36 1 1.8324 -1.9681 -3.6509 37 1 3.2854 -0.9400 -3.6506 38 1 -0.1365 -1.1022 -4.9008 39 1 3.2821 -1.0187 -6.1054 40 1 1.7607 -1.9384 -6.1954 41 1 1.3048 0.6407 -7.2517 42 1 0.8509 1.6972 -10.3830 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497068990.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:23 Heat of formation + Delta-G solvation = -60.640771 kcal Electronic energy + Delta-G solvation = -23052.028906 eV Core-core repulsion = 19452.654152 eV Total energy + Delta-G solvation = -3599.374753 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.97246 -40.99966 -38.99931 -36.12549 -35.99874 -35.28934 -33.38885 -33.19814 -31.18909 -30.14906 -27.54677 -27.17101 -24.95897 -23.70084 -22.76341 -22.35745 -21.71963 -20.86380 -19.24564 -18.78742 -18.27613 -17.55660 -17.20993 -16.61478 -16.41575 -16.28633 -15.76227 -15.48234 -15.35771 -14.95750 -14.91670 -14.50584 -14.44990 -14.13266 -13.95210 -13.65888 -13.50657 -13.19554 -13.07423 -12.96006 -12.72248 -12.24928 -12.20789 -12.11609 -11.97761 -11.80986 -11.12647 -10.97951 -10.94474 -10.91367 -10.69474 -10.11762 -9.28044 -9.02025 -7.95586 -5.25149 1.11154 1.47400 1.50369 1.56622 1.61469 2.07554 2.25308 2.36403 2.56182 3.35409 3.46280 3.58873 3.62572 3.83708 3.90717 3.97226 4.03448 4.21010 4.22774 4.35732 4.42201 4.44624 4.62349 4.65527 4.73121 4.77039 4.84916 4.92490 4.93371 5.10676 5.21282 5.29235 5.37422 5.39047 5.47483 5.81177 6.25510 6.52185 6.59133 6.79831 7.16678 7.21553 7.32626 8.08026 8.30901 9.27349 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.047517 B = 0.002130 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.119338 B =13144.666203 C =13339.284292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.111 0.889 4 C -0.018 4.018 5 C -0.017 4.017 6 C -0.041 4.041 7 N -0.539 5.539 8 C 0.188 3.812 9 N -0.558 5.558 10 H 0.434 0.566 11 C 0.516 3.484 12 O -0.582 6.582 13 N -0.711 5.711 14 C 0.102 3.898 15 C 0.108 3.892 16 H 0.100 0.900 17 O -0.562 6.562 18 C 0.122 3.878 19 N -0.740 5.740 20 C -0.250 4.250 21 H 0.076 0.924 22 C -0.076 4.076 23 N -0.968 5.968 24 Si 0.975 3.025 25 H -0.277 1.277 26 H -0.295 1.295 27 H -0.277 1.277 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.171 0.829 34 H 0.241 0.759 35 H 0.414 0.586 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.385 0.615 39 H 0.033 0.967 40 H 0.030 0.970 41 H 0.376 0.624 42 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.073 -0.036 26.984 27.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 H 0.129 0.871 4 C -0.057 4.057 5 C -0.133 4.133 6 C -0.189 4.189 7 N -0.259 5.259 8 C -0.096 4.096 9 N -0.163 5.163 10 H 0.274 0.726 11 C 0.304 3.696 12 O -0.462 6.462 13 N -0.363 5.363 14 C -0.023 4.023 15 C 0.048 3.952 16 H 0.117 0.883 17 O -0.369 6.369 18 C -0.006 4.006 19 N -0.383 5.383 20 C -0.382 4.382 21 H 0.094 0.906 22 C -0.268 4.268 23 N -0.618 5.618 24 Si 0.804 3.196 25 H -0.204 1.204 26 H -0.222 1.222 27 H -0.203 1.203 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.188 0.812 34 H 0.257 0.743 35 H 0.251 0.749 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.234 0.766 39 H 0.051 0.949 40 H 0.048 0.952 41 H 0.209 0.791 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.062 -0.103 27.505 27.583 hybrid contribution 0.783 -0.209 -1.871 2.039 sum 2.845 -0.313 25.635 25.794 Atomic orbital electron populations 1.21848 0.91462 1.03131 1.03695 1.21213 0.98795 1.00823 0.90638 0.87119 1.19727 1.01736 0.97358 0.86910 1.21155 0.93947 0.98827 0.99417 1.22312 0.98424 1.02977 0.95147 1.70275 1.21477 1.11576 1.22565 1.25654 0.87944 1.02285 0.93750 1.43323 1.17034 1.32300 1.23626 0.72599 1.21053 0.79200 0.84066 0.85295 1.90697 1.39935 1.28176 1.87402 1.45848 1.53263 1.32363 1.04823 1.21825 0.99914 0.96630 0.83979 1.22088 0.81311 1.00309 0.91447 0.88253 1.86556 1.18633 1.34932 1.96767 1.21420 0.97837 0.94684 0.86614 1.42415 1.66739 1.27898 1.01255 1.19610 1.28121 1.05475 0.84985 0.90586 1.25611 1.01589 0.97892 1.01743 1.69821 1.44867 1.17854 1.29245 0.85188 0.77923 0.77168 0.79321 1.20354 1.22159 1.20330 0.90480 0.91275 0.92037 0.89369 0.90476 0.81173 0.74290 0.74916 0.90928 0.90712 0.76613 0.94921 0.95174 0.79135 0.93963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.77 71.98 0.63 -1.17 16 2 C -0.09 -1.29 2.71 -11.54 -0.03 -1.32 16 3 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 4 C -0.02 -0.26 4.60 29.85 0.14 -0.12 16 5 C -0.02 -0.24 6.09 40.95 0.25 0.01 16 6 C -0.04 -0.72 10.10 83.52 0.84 0.12 16 7 N -0.54 -10.45 11.25 -200.30 -2.25 -12.71 16 8 C 0.19 2.21 13.04 180.26 2.35 4.56 16 9 N -0.56 -5.46 6.15 -186.50 -1.15 -6.61 16 10 H 0.43 1.60 8.96 -92.71 -0.83 0.77 16 11 C 0.52 10.62 7.15 87.66 0.63 11.25 16 12 O -0.58 -16.46 15.92 -3.02 -0.05 -16.51 16 13 N -0.71 -13.88 5.34 -463.06 -2.47 -16.35 16 14 C 0.10 2.36 5.34 86.38 0.46 2.82 16 15 C 0.11 3.05 3.09 30.60 0.09 3.15 16 16 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 17 O -0.56 -16.19 13.03 -148.98 -1.94 -18.13 16 18 C 0.12 4.49 5.90 86.38 0.51 5.00 16 19 N -0.74 -36.85 5.55 -343.45 -1.91 -38.76 16 20 C -0.25 -13.86 9.99 84.04 0.84 -13.02 16 21 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 22 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 23 N -0.97 -59.22 13.06 21.65 0.28 -58.94 16 24 Si 0.98 45.82 29.55 68.60 2.03 47.84 16 25 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 26 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 27 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 28 H 0.08 0.96 6.18 -2.39 -0.01 0.95 16 29 H 0.07 0.81 7.56 -2.39 -0.02 0.79 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.38 16 32 H 0.08 1.14 7.95 -2.39 -0.02 1.12 16 33 H 0.17 2.64 8.02 -2.91 -0.02 2.61 16 34 H 0.24 0.77 8.06 -2.91 -0.02 0.75 16 35 H 0.41 6.88 7.77 -92.71 -0.72 6.16 16 36 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.38 9.02 9.05 -74.06 -0.67 8.35 16 39 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.38 20.29 7.67 -92.71 -0.71 19.58 16 42 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -76.26 355.95 -2.14 -78.40 By element: Atomic # 1 Polarization: 36.22 SS G_CDS: -1.86 Total: 34.37 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: 7.18 Total: 7.40 kcal Atomic # 7 Polarization: -125.87 SS G_CDS: -7.50 Total: -133.37 kcal Atomic # 8 Polarization: -32.65 SS G_CDS: -1.99 Total: -34.64 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -76.26 -2.14 -78.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497068990.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.756 kcal (2) G-P(sol) polarization free energy of solvation -76.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds