Wall clock time and date at job start Tue Mar 31 2020 03:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 5 5 C 1.52997 * 109.47080 * 174.99701 * 4 2 1 6 6 N 1.46503 * 109.47297 * 180.02562 * 5 4 2 7 7 C 1.36935 * 120.00080 * 180.02562 * 6 5 4 8 8 H 1.07998 * 120.00128 * 359.97438 * 7 6 5 9 9 C 1.38813 * 119.99818 * 179.97438 * 7 6 5 10 10 N 1.31622 * 119.99884 * 179.97438 * 9 7 6 11 11 Si 1.86806 * 120.00120 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.46964 * 89.99788 * 11 9 7 13 13 H 1.48498 * 109.46932 * 209.99552 * 11 9 7 14 14 H 1.48494 * 109.46861 * 329.99759 * 11 9 7 15 15 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 16 16 C 1.34777 * 119.99828 * 274.72131 * 15 2 1 17 17 O 1.21703 * 120.00020 * 0.28039 * 16 15 2 18 18 C 1.46660 * 120.00141 * 180.27920 * 16 15 2 19 19 C 1.35144 * 126.37719 * 359.68418 * 18 16 15 20 20 N 1.37014 * 107.87658 * 179.87963 * 19 18 16 21 21 C 1.46501 * 125.64735 * 180.15191 * 20 19 18 22 22 C 1.34617 * 108.69725 * 0.39804 * 20 19 18 23 23 O 1.21722 * 125.72731 * 179.73588 * 22 20 19 24 24 N 1.34756 * 108.54418 * 359.75755 * 22 20 19 25 25 C 1.46506 * 126.18260 * 180.02562 * 24 22 20 26 26 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 27 27 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 28 28 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47492 * 295.00122 * 4 2 1 30 30 H 1.09007 * 109.47243 * 54.99904 * 4 2 1 31 31 H 1.09002 * 109.47641 * 299.99883 * 5 4 2 32 32 H 1.08998 * 109.46968 * 60.00255 * 5 4 2 33 33 H 0.96998 * 119.99912 * 359.97438 * 6 5 4 34 34 H 0.97003 * 119.99819 * 180.02562 * 10 9 7 35 35 H 0.97001 * 120.00384 * 95.00578 * 15 2 1 36 36 H 1.08003 * 126.06076 * 0.02983 * 19 18 16 37 37 H 1.08999 * 109.46958 * 180.25888 * 21 20 19 38 38 H 1.08998 * 109.47655 * 300.26082 * 21 20 19 39 39 H 1.09006 * 109.47365 * 60.26677 * 21 20 19 40 40 H 1.09001 * 109.47117 * 270.00437 * 25 24 22 41 41 H 1.09003 * 109.46571 * 29.99791 * 25 24 22 42 42 H 1.08995 * 109.47157 * 149.99965 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5647 -0.6133 -1.3137 6 7 4.0531 -1.3034 -2.5102 7 6 5.3952 -1.3400 -2.7796 8 1 6.0936 -0.8598 -2.1104 9 6 5.8579 -1.9944 -3.9130 10 7 7.1478 -2.0292 -4.1723 11 14 4.6497 -2.8244 -5.0711 12 1 4.2154 -1.8565 -6.1102 13 1 5.3061 -3.9871 -5.7210 14 1 3.4672 -3.2893 -4.3025 15 7 2.0183 -0.6906 1.1962 16 6 2.1523 -0.0169 2.3557 17 8 1.8628 1.1640 2.4104 18 6 2.6470 -0.7067 3.5517 19 6 2.9986 -2.0087 3.6382 20 7 3.4069 -2.2496 4.9237 21 6 3.8754 -3.5366 5.4437 22 6 3.3012 -1.1091 5.6310 23 8 3.5782 -0.9748 6.8086 24 7 2.8366 -0.1413 4.8165 25 6 2.5777 1.2519 5.1886 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.7516 -1.7715 -1.2056 30 1 1.6053 -0.2618 -2.1370 31 1 3.8532 0.4370 -1.3574 32 1 3.9994 -1.0727 -0.4260 33 1 3.4258 -1.7350 -3.1111 34 1 7.4711 -2.4862 -4.9646 35 1 2.2491 -1.6318 1.1526 36 1 2.9661 -2.7307 2.8356 37 1 4.1284 -3.4318 6.4987 38 1 3.0884 -4.2823 5.3312 39 1 4.7582 -3.8534 4.8882 40 1 1.5495 1.3499 5.5368 41 1 3.2606 1.5481 5.9849 42 1 2.7305 1.8941 4.3213 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497332299.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:19 Heat of formation + Delta-G solvation = -4.015156 kcal Electronic energy + Delta-G solvation = -23920.395549 eV Core-core repulsion = 20323.476267 eV Total energy + Delta-G solvation = -3596.919282 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.66546 -39.78114 -37.07501 -36.73594 -35.52040 -34.56927 -32.39690 -31.30722 -30.29138 -28.40195 -28.03977 -26.33578 -24.24933 -23.52461 -21.65721 -21.21450 -20.63657 -20.57298 -18.30018 -17.55392 -17.00841 -16.89156 -16.31175 -15.54239 -15.28268 -15.03013 -14.62429 -14.57805 -14.29720 -14.10816 -13.85442 -13.71427 -13.39601 -13.14934 -12.83527 -12.70396 -12.65362 -12.44749 -12.10740 -11.72719 -11.57849 -11.31182 -10.96710 -10.83835 -10.75531 -10.58870 -10.19716 -10.18783 -10.05278 -9.63899 -9.22675 -8.93897 -8.03887 -7.28771 -5.81072 -3.17397 1.10560 1.91476 2.61467 2.66360 3.09415 3.32004 3.35291 3.39495 3.41277 4.35375 4.54271 4.61267 4.69260 4.79190 4.82116 4.93289 5.02912 5.07665 5.17809 5.24372 5.26166 5.44459 5.53024 5.56288 5.57407 5.70415 5.73403 5.85784 5.87127 6.06374 6.08782 6.14922 6.32384 6.41326 6.63743 6.68534 6.94097 7.34714 7.94987 7.95369 8.06152 8.37681 9.16634 9.88665 10.07976 11.37292 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.016563 B = 0.003457 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.101916 B = 8098.258007 C = 9036.226262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.149 3.851 3 H 0.094 0.906 4 C -0.140 4.140 5 C 0.157 3.843 6 N -0.757 5.757 7 C -0.246 4.246 8 H 0.089 0.911 9 C 0.004 3.996 10 N -0.934 5.934 11 Si 0.886 3.114 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.277 1.277 15 N -0.708 5.708 16 C 0.595 3.405 17 O -0.538 6.538 18 C -0.035 4.035 19 C 0.057 3.943 20 N -0.523 5.523 21 C 0.091 3.909 22 C 0.648 3.352 23 O -0.568 6.568 24 N -0.510 5.510 25 C 0.101 3.899 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.027 0.973 32 H 0.027 0.973 33 H 0.360 0.640 34 H 0.260 0.740 35 H 0.402 0.598 36 H 0.192 0.808 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.172 -1.359 16.116 21.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.045 3.955 3 H 0.112 0.888 4 C -0.178 4.178 5 C 0.030 3.970 6 N -0.403 5.403 7 C -0.376 4.376 8 H 0.107 0.893 9 C -0.192 4.192 10 N -0.582 5.582 11 Si 0.717 3.283 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.204 1.204 15 N -0.359 5.359 16 C 0.381 3.619 17 O -0.416 6.416 18 C -0.144 4.144 19 C -0.073 4.073 20 N -0.240 5.240 21 C -0.050 4.050 22 C 0.351 3.649 23 O -0.446 6.446 24 N -0.230 5.230 25 C -0.040 4.040 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.045 0.955 32 H 0.044 0.956 33 H 0.193 0.807 34 H 0.070 0.930 35 H 0.237 0.763 36 H 0.209 0.791 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.914 -0.333 17.088 22.038 hybrid contribution -0.559 -1.228 -1.054 1.712 sum -14.473 -1.560 16.034 21.656 Atomic orbital electron populations 1.22173 0.95126 1.02139 1.02560 1.21010 0.93711 0.97864 0.82960 0.88806 1.22135 0.98140 1.00889 0.96653 1.20626 0.90070 0.96132 0.90189 1.42711 1.05328 1.66138 1.26112 1.19058 0.82224 1.29481 1.06857 0.89287 1.24693 0.95601 1.00653 0.98215 1.69708 1.11762 1.48163 1.28520 0.86524 0.80808 0.79448 0.81551 1.21063 1.21742 1.20366 1.45800 1.66857 1.14108 1.09136 1.16665 0.77591 0.85992 0.81689 1.90806 1.50937 1.15073 1.84742 1.19705 1.13866 0.92274 0.88508 1.22094 1.01145 0.95627 0.88404 1.44940 1.57954 1.11265 1.09847 1.21911 1.00524 0.80823 1.01760 1.16134 0.82948 0.80603 0.85245 1.91031 1.59661 1.81933 1.11984 1.45173 1.58739 1.11082 1.07989 1.21881 1.01911 0.77309 1.02940 0.92189 0.91370 0.92444 0.91276 0.90041 0.95464 0.95560 0.80699 0.93021 0.76308 0.79092 0.88739 0.90305 0.90042 0.91461 0.90070 0.88120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.49 37.16 0.35 -1.16 16 2 C 0.15 1.63 2.58 -67.93 -0.17 1.46 16 3 H 0.09 1.20 7.57 -51.93 -0.39 0.80 16 4 C -0.14 -1.75 4.87 -26.73 -0.13 -1.88 16 5 C 0.16 2.75 6.15 -4.04 -0.02 2.73 16 6 N -0.76 -17.05 5.41 -59.91 -0.32 -17.38 16 7 C -0.25 -6.81 10.47 -15.06 -0.16 -6.97 16 8 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 9 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 10 N -0.93 -28.91 13.97 55.49 0.78 -28.13 16 11 Si 0.89 21.37 27.74 -169.99 -4.71 16.65 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 H -0.28 -6.16 6.52 56.52 0.37 -5.79 16 15 N -0.71 -7.15 4.51 -55.12 -0.25 -7.40 16 16 C 0.59 7.14 7.75 -12.86 -0.10 7.04 16 17 O -0.54 -7.93 14.49 5.19 0.08 -7.86 16 18 C -0.03 -0.39 6.88 -81.91 -0.56 -0.95 16 19 C 0.06 0.50 10.91 -16.34 -0.18 0.32 16 20 N -0.52 -5.26 3.12 -128.78 -0.40 -5.66 16 21 C 0.09 0.59 11.16 59.85 0.67 1.25 16 22 C 0.65 8.79 8.49 -87.08 -0.74 8.05 16 23 O -0.57 -9.39 17.35 5.17 0.09 -9.30 16 24 N -0.51 -6.44 3.21 -124.82 -0.40 -6.84 16 25 C 0.10 1.10 10.58 59.85 0.63 1.74 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.48 8.14 -51.92 -0.42 0.05 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.03 0.46 7.75 -51.93 -0.40 0.06 16 33 H 0.36 7.82 5.53 -40.82 -0.23 7.60 16 34 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 35 H 0.40 3.17 7.45 -40.82 -0.30 2.86 16 36 H 0.19 0.90 7.37 -52.48 -0.39 0.52 16 37 H 0.09 0.68 7.68 -51.93 -0.40 0.28 16 38 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 42 H 0.10 1.15 6.45 -51.93 -0.33 0.81 16 LS Contribution 352.88 15.07 5.32 5.32 Total: -1.00 -36.83 352.88 -6.61 -43.43 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -6.26 Total: 5.52 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: -0.51 Total: 11.65 kcal Atomic # 7 Polarization: -64.82 SS G_CDS: -0.60 Total: -65.42 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: 0.16 Total: -17.16 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.71 Total: 16.65 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.83 -6.61 -43.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497332299.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.419 kcal (2) G-P(sol) polarization free energy of solvation -36.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds