Wall clock time and date at job start Tue Mar 31 2020 03:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 5 5 C 1.52997 * 109.47080 * 174.99701 * 4 2 1 6 6 N 1.46503 * 109.47297 * 180.02562 * 5 4 2 7 7 C 1.36935 * 120.00080 * 180.02562 * 6 5 4 8 8 H 1.07998 * 120.00128 * 359.97438 * 7 6 5 9 9 C 1.38813 * 119.99818 * 179.97438 * 7 6 5 10 10 N 1.31622 * 119.99884 * 179.97438 * 9 7 6 11 11 Si 1.86806 * 120.00120 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.46964 * 89.99788 * 11 9 7 13 13 H 1.48498 * 109.46932 * 209.99552 * 11 9 7 14 14 H 1.48494 * 109.46861 * 329.99759 * 11 9 7 15 15 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 16 16 C 1.34777 * 119.99828 * 274.72131 * 15 2 1 17 17 O 1.21703 * 120.00020 * 0.28039 * 16 15 2 18 18 C 1.46660 * 120.00141 * 180.27920 * 16 15 2 19 19 C 1.35144 * 126.37719 * 359.68418 * 18 16 15 20 20 N 1.37014 * 107.87658 * 179.87963 * 19 18 16 21 21 C 1.46501 * 125.64735 * 180.15191 * 20 19 18 22 22 C 1.34617 * 108.69725 * 0.39804 * 20 19 18 23 23 O 1.21722 * 125.72731 * 179.73588 * 22 20 19 24 24 N 1.34756 * 108.54418 * 359.75755 * 22 20 19 25 25 C 1.46506 * 126.18260 * 180.02562 * 24 22 20 26 26 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 27 27 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 28 28 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47492 * 295.00122 * 4 2 1 30 30 H 1.09007 * 109.47243 * 54.99904 * 4 2 1 31 31 H 1.09002 * 109.47641 * 299.99883 * 5 4 2 32 32 H 1.08998 * 109.46968 * 60.00255 * 5 4 2 33 33 H 0.96998 * 119.99912 * 359.97438 * 6 5 4 34 34 H 0.97003 * 119.99819 * 180.02562 * 10 9 7 35 35 H 0.97001 * 120.00384 * 95.00578 * 15 2 1 36 36 H 1.08003 * 126.06076 * 0.02983 * 19 18 16 37 37 H 1.08999 * 109.46958 * 180.25888 * 21 20 19 38 38 H 1.08998 * 109.47655 * 300.26082 * 21 20 19 39 39 H 1.09006 * 109.47365 * 60.26677 * 21 20 19 40 40 H 1.09001 * 109.47117 * 270.00437 * 25 24 22 41 41 H 1.09003 * 109.46571 * 29.99791 * 25 24 22 42 42 H 1.08995 * 109.47157 * 149.99965 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5647 -0.6133 -1.3137 6 7 4.0531 -1.3034 -2.5102 7 6 5.3952 -1.3400 -2.7796 8 1 6.0936 -0.8598 -2.1104 9 6 5.8579 -1.9944 -3.9130 10 7 7.1478 -2.0292 -4.1723 11 14 4.6497 -2.8244 -5.0711 12 1 4.2154 -1.8565 -6.1102 13 1 5.3061 -3.9871 -5.7210 14 1 3.4672 -3.2893 -4.3025 15 7 2.0183 -0.6906 1.1962 16 6 2.1523 -0.0169 2.3557 17 8 1.8628 1.1640 2.4104 18 6 2.6470 -0.7067 3.5517 19 6 2.9986 -2.0087 3.6382 20 7 3.4069 -2.2496 4.9237 21 6 3.8754 -3.5366 5.4437 22 6 3.3012 -1.1091 5.6310 23 8 3.5782 -0.9748 6.8086 24 7 2.8366 -0.1413 4.8165 25 6 2.5777 1.2519 5.1886 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.7516 -1.7715 -1.2056 30 1 1.6053 -0.2618 -2.1370 31 1 3.8532 0.4370 -1.3574 32 1 3.9994 -1.0727 -0.4260 33 1 3.4258 -1.7350 -3.1111 34 1 7.4711 -2.4862 -4.9646 35 1 2.2491 -1.6318 1.1526 36 1 2.9661 -2.7307 2.8356 37 1 4.1284 -3.4318 6.4987 38 1 3.0884 -4.2823 5.3312 39 1 4.7582 -3.8534 4.8882 40 1 1.5495 1.3499 5.5368 41 1 3.2606 1.5481 5.9849 42 1 2.7305 1.8941 4.3213 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497332299.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:18 Heat of formation + Delta-G solvation = -31.222829 kcal Electronic energy + Delta-G solvation = -23921.575363 eV Core-core repulsion = 20323.476267 eV Total energy + Delta-G solvation = -3598.099095 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.53957 -40.71421 -38.14151 -37.83791 -36.49635 -36.02799 -33.82804 -32.80262 -31.14689 -29.72061 -28.87311 -27.09912 -25.68928 -24.58084 -23.09781 -22.34011 -21.54920 -21.48088 -19.72472 -18.99609 -17.89261 -17.77675 -17.26867 -16.61049 -16.33870 -16.20091 -15.99002 -15.65284 -15.50533 -15.06513 -14.95787 -14.84232 -14.60151 -14.24250 -14.01713 -13.82009 -13.43636 -13.28562 -13.27176 -12.93471 -12.85941 -12.56924 -12.34869 -12.12778 -11.93828 -11.85778 -11.76809 -11.68446 -11.07584 -10.95393 -10.92692 -10.12179 -9.26215 -8.91895 -7.99561 -5.33895 0.30858 1.09691 1.42123 1.47419 1.54868 1.63485 1.84697 2.20941 2.52873 2.59413 3.32342 3.49849 3.58501 3.94541 3.98260 4.08736 4.14863 4.20166 4.31001 4.33357 4.39247 4.52997 4.62651 4.66789 4.69561 4.79580 4.84419 4.90069 4.94261 5.07849 5.22898 5.26139 5.33663 5.41195 5.54634 5.62424 5.78787 6.08916 6.24119 6.53925 7.01971 7.12158 7.18696 7.87479 8.08041 9.22137 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.016563 B = 0.003457 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.101916 B = 8098.258007 C = 9036.226262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.154 3.846 3 H 0.071 0.929 4 C -0.123 4.123 5 C 0.152 3.848 6 N -0.757 5.757 7 C -0.238 4.238 8 H 0.049 0.951 9 C -0.067 4.067 10 N -0.987 5.987 11 Si 0.961 3.039 12 H -0.281 1.281 13 H -0.299 1.299 14 H -0.239 1.239 15 N -0.697 5.697 16 C 0.596 3.404 17 O -0.573 6.573 18 C -0.070 4.070 19 C 0.091 3.909 20 N -0.518 5.518 21 C 0.083 3.917 22 C 0.630 3.370 23 O -0.610 6.610 24 N -0.518 5.518 25 C 0.101 3.899 26 H 0.047 0.953 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.008 0.992 32 H 0.031 0.969 33 H 0.369 0.631 34 H 0.257 0.743 35 H 0.415 0.585 36 H 0.239 0.761 37 H 0.081 0.919 38 H 0.109 0.891 39 H 0.101 0.899 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.743 -3.699 15.189 22.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.050 3.950 3 H 0.089 0.911 4 C -0.161 4.161 5 C 0.026 3.974 6 N -0.403 5.403 7 C -0.369 4.369 8 H 0.068 0.932 9 C -0.258 4.258 10 N -0.638 5.638 11 Si 0.787 3.213 12 H -0.208 1.208 13 H -0.226 1.226 14 H -0.163 1.163 15 N -0.349 5.349 16 C 0.383 3.617 17 O -0.454 6.454 18 C -0.177 4.177 19 C -0.039 4.039 20 N -0.233 5.233 21 C -0.057 4.057 22 C 0.332 3.668 23 O -0.491 6.491 24 N -0.237 5.237 25 C -0.040 4.040 26 H 0.066 0.934 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.026 0.974 32 H 0.049 0.951 33 H 0.203 0.797 34 H 0.066 0.934 35 H 0.253 0.747 36 H 0.255 0.745 37 H 0.100 0.900 38 H 0.128 0.872 39 H 0.120 0.880 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.536 -2.704 16.167 23.283 hybrid contribution 0.323 -0.467 -0.696 0.898 sum -16.213 -3.170 15.471 22.633 Atomic orbital electron populations 1.22091 0.93254 1.03311 1.02490 1.20883 0.94982 0.96591 0.82564 0.91058 1.21991 0.93854 1.02671 0.97621 1.20803 0.93818 0.94363 0.88375 1.42678 1.03359 1.66524 1.27771 1.19016 0.84133 1.27914 1.05819 0.93247 1.25606 0.97590 1.02157 1.00464 1.69914 1.14503 1.49958 1.29417 0.85326 0.79228 0.77738 0.78963 1.20768 1.22558 1.16323 1.45674 1.66272 1.14642 1.08296 1.16762 0.77100 0.85579 0.82229 1.90789 1.52670 1.16645 1.85307 1.19747 1.16687 0.93409 0.87896 1.22818 0.97422 0.95260 0.88401 1.45201 1.56706 1.11361 1.10046 1.22243 1.02467 0.79649 1.01296 1.16400 0.83550 0.81701 0.85128 1.90981 1.61588 1.82827 1.13748 1.45301 1.58432 1.11323 1.08671 1.21871 1.02428 0.77098 1.02595 0.93363 0.90411 0.90584 0.88894 0.89218 0.97366 0.95100 0.79738 0.93380 0.74690 0.74521 0.90030 0.87217 0.88038 0.90644 0.90070 0.88827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.49 71.98 0.68 -1.70 16 2 C 0.15 3.00 2.58 44.99 0.12 3.12 16 3 H 0.07 1.75 7.57 -2.39 -0.02 1.73 16 4 C -0.12 -2.63 4.87 30.59 0.15 -2.48 16 5 C 0.15 5.05 6.15 86.38 0.53 5.58 16 6 N -0.76 -32.44 5.41 -343.45 -1.86 -34.30 16 7 C -0.24 -13.14 10.47 84.03 0.88 -12.26 16 8 H 0.05 3.06 8.06 -2.91 -0.02 3.03 16 9 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 10 N -0.99 -62.31 13.97 21.65 0.30 -62.00 16 11 Si 0.96 42.90 27.74 68.60 1.90 44.80 16 12 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 13 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 14 H -0.24 -9.09 6.52 99.48 0.65 -8.44 16 15 N -0.70 -12.26 4.51 -446.51 -2.02 -14.28 16 16 C 0.60 13.63 7.75 86.44 0.67 14.30 16 17 O -0.57 -17.01 14.49 -4.36 -0.06 -17.07 16 18 C -0.07 -1.47 6.88 39.35 0.27 -1.20 16 19 C 0.09 1.29 10.91 83.17 0.91 2.20 16 20 N -0.52 -9.35 3.12 -679.66 -2.12 -11.47 16 21 C 0.08 0.85 11.16 127.77 1.43 2.27 16 22 C 0.63 16.98 8.49 179.11 1.52 18.51 16 23 O -0.61 -20.71 17.35 -4.42 -0.08 -20.79 16 24 N -0.52 -13.09 3.21 -667.05 -2.14 -15.24 16 25 C 0.10 2.32 10.58 127.77 1.35 3.68 16 26 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 31 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.03 1.01 7.75 -2.39 -0.02 0.99 16 33 H 0.37 14.55 5.53 -92.71 -0.51 14.04 16 34 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 35 H 0.42 4.85 7.45 -92.71 -0.69 4.16 16 36 H 0.24 0.94 7.37 -2.91 -0.02 0.92 16 37 H 0.08 1.09 7.68 -2.39 -0.02 1.07 16 38 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 40 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.08 1.80 8.08 -2.39 -0.02 1.78 16 42 H 0.09 2.27 6.45 -2.39 -0.02 2.25 16 Total: -1.00 -83.60 352.88 2.68 -80.92 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -0.22 Total: 20.77 kcal Atomic # 6 Polarization: 19.69 SS G_CDS: 8.97 Total: 28.66 kcal Atomic # 7 Polarization: -129.45 SS G_CDS: -7.83 Total: -137.29 kcal Atomic # 8 Polarization: -37.72 SS G_CDS: -0.14 Total: -37.86 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.90 Total: 44.80 kcal Total: -83.60 2.68 -80.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497332299.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.701 kcal (2) G-P(sol) polarization free energy of solvation -83.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds