Wall clock time and date at job start Tue Mar 31 2020 03:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 C 1.52999 * 109.47284 * 240.00442 * 2 1 3 5 5 N 1.46501 * 109.47252 * 185.00253 * 4 2 1 6 6 C 1.36941 * 119.99931 * 179.97438 * 5 4 2 7 7 H 1.07992 * 119.99932 * 359.97438 * 6 5 4 8 8 C 1.38806 * 119.99553 * 179.97438 * 6 5 4 9 9 N 1.31613 * 120.00490 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99736 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47078 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47071 * 119.99447 * 10 8 6 13 13 H 1.48499 * 109.47318 * 239.99896 * 10 8 6 14 14 N 1.46499 * 109.47288 * 119.99801 * 2 1 3 15 15 C 1.34777 * 120.00199 * 275.00460 * 14 2 1 16 16 O 1.21283 * 119.99750 * 359.97438 * 15 14 2 17 17 C 1.50702 * 119.99928 * 180.27479 * 15 14 2 18 18 O 1.42899 * 109.46876 * 179.72354 * 17 15 14 19 19 C 1.42901 * 113.99607 * 179.97438 * 18 17 15 20 20 C 1.50708 * 109.46875 * 179.97438 * 19 18 17 21 21 N 1.30492 * 125.64941 * 90.02620 * 20 19 18 22 22 C 1.34129 * 109.25659 * 179.97438 * 21 20 19 23 23 C 1.34665 * 108.01929 * 359.97438 * 22 21 20 24 24 N 1.35035 * 125.64801 * 269.71664 * 20 19 18 25 25 C 1.46499 * 126.40097 * 0.02562 * 24 20 19 26 26 H 1.08993 * 109.47268 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47495 * 300.00247 * 1 2 3 28 28 H 1.09007 * 109.47320 * 60.00143 * 1 2 3 29 29 H 1.09006 * 109.46830 * 304.99500 * 4 2 1 30 30 H 1.08994 * 109.47535 * 64.99592 * 4 2 1 31 31 H 0.97002 * 119.99978 * 359.97438 * 5 4 2 32 32 H 0.97001 * 120.00452 * 180.02562 * 9 8 6 33 33 H 0.97000 * 119.99484 * 94.99557 * 14 2 1 34 34 H 1.09004 * 109.46965 * 299.72211 * 17 15 14 35 35 H 1.08994 * 109.46990 * 59.72065 * 17 15 14 36 36 H 1.09003 * 109.47075 * 299.99807 * 19 18 17 37 37 H 1.09001 * 109.47248 * 60.00362 * 19 18 17 38 38 H 1.07997 * 125.98802 * 180.02562 * 22 21 20 39 39 H 1.07998 * 126.59006 * 180.02562 * 23 22 21 40 40 H 1.08998 * 109.47486 * 89.99545 * 25 24 20 41 41 H 1.08999 * 109.47603 * 209.99885 * 25 24 20 42 42 H 1.09004 * 109.47271 * 329.99851 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5001 -0.8263 -1.1906 6 6 4.1838 -1.4387 -2.2068 7 1 3.6467 -1.8445 -3.0513 8 6 5.5672 -1.5379 -2.1514 9 7 6.2218 -1.0429 -1.1224 10 14 6.4999 -2.3739 -3.5372 11 1 5.5394 -2.8423 -4.5684 12 1 7.4500 -1.4092 -4.1470 13 1 7.2517 -3.5354 -2.9979 14 7 2.0183 -0.6906 1.1962 15 6 2.1470 -0.0182 2.3572 16 8 1.8589 1.1586 2.4115 17 6 2.6553 -0.7271 3.5861 18 8 2.7082 0.1924 4.6787 19 6 3.1790 -0.3821 5.8994 20 6 3.1943 0.6712 6.9772 21 7 2.2073 0.9471 7.7850 22 6 2.5757 1.9373 8.6114 23 6 3.8391 2.2879 8.3043 24 7 4.2337 1.4817 7.2708 25 6 5.5388 1.4974 6.6056 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6054 -1.7198 -1.2952 30 1 1.7516 -0.1583 -2.1370 31 1 3.9824 -0.4622 -0.4319 32 1 7.1886 -1.1119 -1.0839 33 1 2.2490 -1.6317 1.1526 34 1 1.9840 -1.5491 3.8351 35 1 3.6536 -1.1193 3.3925 36 1 2.5183 -1.1967 6.1963 37 1 4.1883 -0.7674 5.7542 38 1 1.9661 2.3758 9.3876 39 1 4.4290 3.0549 8.7839 40 1 5.5116 2.1947 5.7683 41 1 6.3045 1.8112 7.3150 42 1 5.7716 0.4978 6.2384 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669324060.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:23 Heat of formation + Delta-G solvation = -2.096293 kcal Electronic energy + Delta-G solvation = -23419.432609 eV Core-core repulsion = 19822.596535 eV Total energy + Delta-G solvation = -3596.836074 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.23261 -39.61001 -37.71153 -36.01407 -34.18754 -33.65799 -31.65714 -31.01229 -30.04615 -27.90858 -27.17382 -25.83069 -25.58594 -22.71988 -21.57025 -21.10967 -20.26046 -20.00900 -17.64133 -17.28247 -17.00871 -16.58818 -16.30933 -15.82614 -15.33406 -14.90392 -14.71111 -14.54964 -13.91799 -13.72661 -13.63671 -13.32616 -13.17148 -13.09919 -12.89532 -12.44074 -12.34396 -12.21191 -11.95434 -11.87636 -11.58502 -10.94841 -10.88035 -10.47349 -10.14161 -10.06590 -9.89626 -9.79640 -9.77028 -9.50344 -8.97239 -8.70587 -8.63155 -7.01152 -5.83803 -3.13302 1.71990 2.54701 2.78007 2.91164 3.24881 3.38064 3.44324 3.46154 3.96593 4.44484 4.47671 4.52590 4.58752 4.79897 4.93492 4.97266 5.08292 5.14893 5.22558 5.23479 5.27240 5.30581 5.49724 5.50567 5.57153 5.65663 6.01510 6.07506 6.08816 6.17184 6.40001 6.45761 6.57691 6.68023 6.78165 6.93051 6.98427 7.63881 7.84964 7.93011 8.34309 8.54575 9.46360 10.02256 10.37837 11.38679 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.016938 B = 0.003065 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.661208 B = 9134.396374 C =10417.173027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.136 3.864 3 H 0.087 0.913 4 C 0.144 3.856 5 N -0.732 5.732 6 C -0.241 4.241 7 H 0.072 0.928 8 C -0.013 4.013 9 N -0.932 5.932 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 N -0.710 5.710 15 C 0.516 3.484 16 O -0.528 6.528 17 C 0.044 3.956 18 O -0.356 6.356 19 C 0.147 3.853 20 C 0.206 3.794 21 N -0.473 5.473 22 C -0.030 4.030 23 C -0.052 4.052 24 N -0.449 5.449 25 C 0.068 3.932 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.025 0.975 30 H 0.034 0.966 31 H 0.386 0.614 32 H 0.254 0.746 33 H 0.404 0.596 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.172 0.828 39 H 0.176 0.824 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.501 1.022 16.947 17.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.031 3.969 3 H 0.105 0.895 4 C 0.016 3.984 5 N -0.377 5.377 6 C -0.372 4.372 7 H 0.090 0.910 8 C -0.209 4.209 9 N -0.580 5.580 10 Si 0.739 3.261 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 N -0.363 5.363 15 C 0.301 3.699 16 O -0.403 6.403 17 C -0.036 4.036 18 O -0.273 6.273 19 C 0.069 3.931 20 C -0.056 4.056 21 N -0.193 5.193 22 C -0.179 4.179 23 C -0.186 4.186 24 N -0.131 5.131 25 C -0.074 4.074 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.043 0.957 30 H 0.052 0.948 31 H 0.220 0.780 32 H 0.064 0.936 33 H 0.239 0.761 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.189 0.811 39 H 0.193 0.807 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.336 1.593 16.705 17.609 hybrid contribution 1.879 -0.517 -0.494 2.011 sum -3.456 1.075 16.211 16.610 Atomic orbital electron populations 1.22108 0.95446 1.01894 1.02237 1.21237 0.93377 0.97994 0.84272 0.89534 1.20995 0.86800 0.97018 0.93587 1.42376 0.99783 1.70259 1.25302 1.19275 0.89439 1.29244 0.99237 0.91045 1.24748 0.96440 1.01593 0.98127 1.69673 1.07141 1.50901 1.30319 0.86113 0.79898 0.78711 0.81412 1.20539 1.21862 1.21883 1.45851 1.67012 1.14430 1.08968 1.20044 0.78249 0.87433 0.84182 1.90712 1.49195 1.15662 1.84759 1.22268 1.02300 0.92428 0.86637 1.88088 1.86958 1.35233 1.17003 1.20506 0.99847 0.91265 0.81481 1.22615 0.84581 0.98277 1.00126 1.70206 1.26666 1.15800 1.06633 1.22324 0.94483 0.98612 1.02470 1.22760 0.99000 1.01060 0.95766 1.45295 1.13363 1.27626 1.26853 1.22140 0.81694 1.04874 0.98733 0.92530 0.92370 0.91622 0.95675 0.94785 0.78028 0.93573 0.76116 0.90054 0.89578 0.89739 0.91438 0.81111 0.80660 0.89724 0.89441 0.89268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.48 37.16 0.35 -1.84 16 2 C 0.14 2.28 2.73 -67.93 -0.19 2.09 16 3 H 0.09 1.67 7.58 -51.93 -0.39 1.28 16 4 C 0.14 2.74 5.82 -4.04 -0.02 2.72 16 5 N -0.73 -17.74 5.43 -59.91 -0.33 -18.07 16 6 C -0.24 -6.50 9.99 -15.06 -0.15 -6.65 16 7 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 8 C -0.01 -0.36 5.50 -17.44 -0.10 -0.46 16 9 N -0.93 -27.30 13.06 55.49 0.72 -26.58 16 10 Si 0.91 21.80 29.55 -169.99 -5.02 16.77 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 N -0.71 -11.14 4.52 -53.81 -0.24 -11.39 16 15 C 0.52 8.67 7.87 -10.98 -0.09 8.58 16 16 O -0.53 -11.12 16.16 -14.35 -0.23 -11.35 16 17 C 0.04 0.56 6.42 36.01 0.23 0.79 16 18 O -0.36 -5.34 9.86 -55.14 -0.54 -5.89 16 19 C 0.15 1.69 6.24 36.01 0.22 1.92 16 20 C 0.21 2.75 7.53 -155.43 -1.17 1.58 16 21 N -0.47 -7.00 11.25 -10.82 -0.12 -7.12 16 22 C -0.03 -0.35 11.87 -17.81 -0.21 -0.57 16 23 C -0.05 -0.53 11.58 -16.56 -0.19 -0.72 16 24 N -0.45 -4.97 3.15 -121.28 -0.38 -5.35 16 25 C 0.07 0.52 10.97 59.85 0.66 1.17 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.39 9.96 7.33 -40.82 -0.30 9.66 16 32 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.40 5.73 8.60 -40.82 -0.35 5.38 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.58 7.06 -51.93 -0.37 0.22 16 38 H 0.17 1.52 8.06 -52.49 -0.42 1.10 16 39 H 0.18 1.11 8.06 -52.49 -0.42 0.68 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.09 0.58 7.04 -51.93 -0.37 0.22 16 LS Contribution 361.60 15.07 5.45 5.45 Total: -1.00 -36.71 361.60 -7.74 -44.46 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -6.40 Total: 10.45 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: -0.65 Total: 8.61 kcal Atomic # 7 Polarization: -68.16 SS G_CDS: -0.35 Total: -68.51 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.78 Total: -17.24 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.71 -7.74 -44.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669324060.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.363 kcal (2) G-P(sol) polarization free energy of solvation -36.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds