Wall clock time and date at job start Tue Mar 31 2020 03:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 C 1.52999 * 109.47284 * 240.00442 * 2 1 3 5 5 N 1.46501 * 109.47252 * 185.00253 * 4 2 1 6 6 C 1.36941 * 119.99931 * 179.97438 * 5 4 2 7 7 H 1.07992 * 119.99932 * 359.97438 * 6 5 4 8 8 C 1.38806 * 119.99553 * 179.97438 * 6 5 4 9 9 N 1.31613 * 120.00490 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99736 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47078 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47071 * 119.99447 * 10 8 6 13 13 H 1.48499 * 109.47318 * 239.99896 * 10 8 6 14 14 N 1.46499 * 109.47288 * 119.99801 * 2 1 3 15 15 C 1.34777 * 120.00199 * 275.00460 * 14 2 1 16 16 O 1.21283 * 119.99750 * 359.97438 * 15 14 2 17 17 C 1.50702 * 119.99928 * 180.27479 * 15 14 2 18 18 O 1.42899 * 109.46876 * 179.72354 * 17 15 14 19 19 C 1.42901 * 113.99607 * 179.97438 * 18 17 15 20 20 C 1.50708 * 109.46875 * 179.97438 * 19 18 17 21 21 N 1.30492 * 125.64941 * 90.02620 * 20 19 18 22 22 C 1.34129 * 109.25659 * 179.97438 * 21 20 19 23 23 C 1.34665 * 108.01929 * 359.97438 * 22 21 20 24 24 N 1.35035 * 125.64801 * 269.71664 * 20 19 18 25 25 C 1.46499 * 126.40097 * 0.02562 * 24 20 19 26 26 H 1.08993 * 109.47268 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47495 * 300.00247 * 1 2 3 28 28 H 1.09007 * 109.47320 * 60.00143 * 1 2 3 29 29 H 1.09006 * 109.46830 * 304.99500 * 4 2 1 30 30 H 1.08994 * 109.47535 * 64.99592 * 4 2 1 31 31 H 0.97002 * 119.99978 * 359.97438 * 5 4 2 32 32 H 0.97001 * 120.00452 * 180.02562 * 9 8 6 33 33 H 0.97000 * 119.99484 * 94.99557 * 14 2 1 34 34 H 1.09004 * 109.46965 * 299.72211 * 17 15 14 35 35 H 1.08994 * 109.46990 * 59.72065 * 17 15 14 36 36 H 1.09003 * 109.47075 * 299.99807 * 19 18 17 37 37 H 1.09001 * 109.47248 * 60.00362 * 19 18 17 38 38 H 1.07997 * 125.98802 * 180.02562 * 22 21 20 39 39 H 1.07998 * 126.59006 * 180.02562 * 23 22 21 40 40 H 1.08998 * 109.47486 * 89.99545 * 25 24 20 41 41 H 1.08999 * 109.47603 * 209.99885 * 25 24 20 42 42 H 1.09004 * 109.47271 * 329.99851 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5001 -0.8263 -1.1906 6 6 4.1838 -1.4387 -2.2068 7 1 3.6467 -1.8445 -3.0513 8 6 5.5672 -1.5379 -2.1514 9 7 6.2218 -1.0429 -1.1224 10 14 6.4999 -2.3739 -3.5372 11 1 5.5394 -2.8423 -4.5684 12 1 7.4500 -1.4092 -4.1470 13 1 7.2517 -3.5354 -2.9979 14 7 2.0183 -0.6906 1.1962 15 6 2.1470 -0.0182 2.3572 16 8 1.8589 1.1586 2.4115 17 6 2.6553 -0.7271 3.5861 18 8 2.7082 0.1924 4.6787 19 6 3.1790 -0.3821 5.8994 20 6 3.1943 0.6712 6.9772 21 7 2.2073 0.9471 7.7850 22 6 2.5757 1.9373 8.6114 23 6 3.8391 2.2879 8.3043 24 7 4.2337 1.4817 7.2708 25 6 5.5388 1.4974 6.6056 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6054 -1.7198 -1.2952 30 1 1.7516 -0.1583 -2.1370 31 1 3.9824 -0.4622 -0.4319 32 1 7.1886 -1.1119 -1.0839 33 1 2.2490 -1.6317 1.1526 34 1 1.9840 -1.5491 3.8351 35 1 3.6536 -1.1193 3.3925 36 1 2.5183 -1.1967 6.1963 37 1 4.1883 -0.7674 5.7542 38 1 1.9661 2.3758 9.3876 39 1 4.4290 3.0549 8.7839 40 1 5.5116 2.1947 5.7683 41 1 6.3045 1.8112 7.3150 42 1 5.7716 0.4978 6.2384 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669324060.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:22 Heat of formation + Delta-G solvation = -28.565221 kcal Electronic energy + Delta-G solvation = -23420.580388 eV Core-core repulsion = 19822.596535 eV Total energy + Delta-G solvation = -3597.983853 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.06140 -40.91756 -38.79569 -37.53615 -35.44455 -34.97719 -33.19454 -32.12544 -31.52992 -28.88813 -27.92830 -27.40645 -26.61371 -24.52131 -22.49345 -22.38470 -21.49616 -20.99191 -19.25424 -18.53571 -18.03158 -17.77453 -17.32540 -17.00522 -16.63015 -16.26410 -15.83000 -15.67424 -15.33630 -15.20384 -14.88624 -14.64570 -14.16798 -13.92159 -13.82092 -13.64184 -13.61550 -13.50046 -13.12977 -13.02701 -12.81433 -12.80173 -12.60821 -12.09815 -11.89625 -11.69358 -11.04653 -11.00853 -10.84302 -10.82247 -10.61668 -10.06031 -9.46883 -9.00137 -7.93646 -5.22903 0.86869 1.49400 1.50660 1.59915 1.60922 1.74200 1.91776 2.19308 2.56924 3.02333 3.40841 3.55583 3.71614 3.82429 3.88618 3.93192 4.06040 4.16640 4.21776 4.27329 4.31246 4.36442 4.39020 4.52730 4.54843 4.66959 4.76682 4.80352 4.87552 4.95198 5.12580 5.28510 5.31011 5.52438 5.57059 5.78658 5.90666 6.15614 6.27588 6.59838 7.06719 7.27049 7.35062 8.07816 8.32163 9.29579 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.016938 B = 0.003065 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.661208 B = 9134.396374 C =10417.173027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.141 3.859 3 H 0.055 0.945 4 C 0.146 3.854 5 N -0.744 5.744 6 C -0.242 4.242 7 H 0.079 0.921 8 C -0.073 4.073 9 N -0.967 5.967 10 Si 0.972 3.028 11 H -0.266 1.266 12 H -0.299 1.299 13 H -0.292 1.292 14 N -0.702 5.702 15 C 0.510 3.490 16 O -0.579 6.579 17 C 0.049 3.951 18 O -0.391 6.391 19 C 0.146 3.854 20 C 0.177 3.823 21 N -0.515 5.515 22 C -0.059 4.059 23 C -0.041 4.041 24 N -0.451 5.451 25 C 0.062 3.938 26 H 0.077 0.923 27 H 0.047 0.953 28 H 0.079 0.921 29 H 0.045 0.955 30 H 0.037 0.963 31 H 0.374 0.626 32 H 0.250 0.750 33 H 0.413 0.587 34 H 0.118 0.882 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.190 0.810 39 H 0.214 0.786 40 H 0.074 0.926 41 H 0.117 0.883 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.329 -0.142 16.929 17.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.036 3.964 3 H 0.073 0.927 4 C 0.020 3.980 5 N -0.387 5.387 6 C -0.374 4.374 7 H 0.097 0.903 8 C -0.266 4.266 9 N -0.618 5.618 10 Si 0.801 3.199 11 H -0.191 1.191 12 H -0.226 1.226 13 H -0.219 1.219 14 N -0.355 5.355 15 C 0.296 3.704 16 O -0.459 6.459 17 C -0.030 4.030 18 O -0.309 6.309 19 C 0.069 3.931 20 C -0.085 4.085 21 N -0.236 5.236 22 C -0.208 4.208 23 C -0.175 4.175 24 N -0.134 5.134 25 C -0.079 4.079 26 H 0.095 0.905 27 H 0.066 0.934 28 H 0.098 0.902 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.207 0.793 32 H 0.059 0.941 33 H 0.250 0.750 34 H 0.135 0.865 35 H 0.123 0.877 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.207 0.793 39 H 0.231 0.769 40 H 0.093 0.907 41 H 0.136 0.864 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.195 0.385 16.660 17.455 hybrid contribution 1.778 -0.099 -0.473 1.843 sum -3.417 0.286 16.187 16.546 Atomic orbital electron populations 1.22008 0.92775 1.03300 1.02458 1.21078 0.95281 0.96058 0.83944 0.92664 1.21129 0.84072 0.98161 0.94687 1.42547 1.01827 1.69942 1.24391 1.19663 0.89870 1.28169 0.99679 0.90320 1.25522 0.97500 1.03051 1.00478 1.69820 1.06968 1.52752 1.32224 0.85098 0.78473 0.77322 0.78968 1.19060 1.22629 1.21912 1.45802 1.66450 1.14732 1.08515 1.20805 0.77235 0.86971 0.85345 1.90683 1.51570 1.17961 1.85640 1.22324 1.03922 0.92164 0.84570 1.88033 1.87595 1.36956 1.18351 1.20720 1.01572 0.90982 0.79858 1.22961 0.85227 0.99547 1.00781 1.70134 1.28166 1.17329 1.07947 1.22817 0.95907 0.98821 1.03219 1.23391 0.98691 1.00674 0.94782 1.45570 1.13952 1.27025 1.26836 1.22380 0.80932 1.05451 0.99160 0.90451 0.93373 0.90209 0.93710 0.94507 0.79338 0.94095 0.75007 0.86477 0.87670 0.88590 0.88672 0.79339 0.76927 0.90707 0.86428 0.88248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 9.48 71.98 0.68 -3.17 16 2 C 0.14 4.68 2.73 44.99 0.12 4.80 16 3 H 0.06 2.19 7.58 -2.39 -0.02 2.17 16 4 C 0.15 5.37 5.82 86.38 0.50 5.88 16 5 N -0.74 -35.65 5.43 -343.46 -1.87 -37.52 16 6 C -0.24 -12.83 9.99 84.03 0.84 -11.99 16 7 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 8 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 9 N -0.97 -56.94 13.06 21.65 0.28 -56.66 16 10 Si 0.97 44.45 29.55 68.60 2.03 46.47 16 11 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 12 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 13 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 14 N -0.70 -21.57 4.52 -442.54 -2.00 -23.57 16 15 C 0.51 17.09 7.87 87.66 0.69 17.78 16 16 O -0.58 -25.15 16.16 16.00 0.26 -24.89 16 17 C 0.05 1.21 6.42 71.24 0.46 1.67 16 18 O -0.39 -11.65 9.86 -129.94 -1.28 -12.93 16 19 C 0.15 3.23 6.24 71.24 0.44 3.68 16 20 C 0.18 4.67 7.53 138.14 1.04 5.71 16 21 N -0.51 -15.41 11.25 -188.14 -2.12 -17.53 16 22 C -0.06 -1.39 11.87 83.52 0.99 -0.40 16 23 C -0.04 -0.77 11.58 83.08 0.96 0.19 16 24 N -0.45 -9.53 3.15 -537.62 -1.69 -11.23 16 25 C 0.06 0.84 10.97 127.77 1.40 2.25 16 26 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 29 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.37 19.48 7.33 -92.71 -0.68 18.80 16 32 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 33 H 0.41 11.12 8.60 -92.71 -0.80 10.33 16 34 H 0.12 2.00 8.14 -2.38 -0.02 1.98 16 35 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.10 1.48 7.06 -2.39 -0.02 1.47 16 38 H 0.19 3.31 8.06 -2.91 -0.02 3.29 16 39 H 0.21 2.08 8.06 -2.91 -0.02 2.06 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 41 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.10 1.13 7.04 -2.38 -0.02 1.11 16 Total: -1.00 -80.88 361.60 1.77 -79.11 By element: Atomic # 1 Polarization: 36.36 SS G_CDS: -0.44 Total: 35.92 kcal Atomic # 6 Polarization: 14.22 SS G_CDS: 8.60 Total: 22.83 kcal Atomic # 7 Polarization: -139.12 SS G_CDS: -7.39 Total: -146.51 kcal Atomic # 8 Polarization: -36.79 SS G_CDS: -1.02 Total: -37.82 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -80.88 1.77 -79.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669324060.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.542 kcal (2) G-P(sol) polarization free energy of solvation -80.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds