Wall clock time and date at job start Tue Mar 31 2020 03:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.47050 * 125.40896 * 2 1 4 4 C 1.54108 * 103.86207 * 180.02562 * 3 2 1 5 5 H 1.09004 * 110.67317 * 118.65805 * 4 3 2 6 6 C 1.50702 * 110.54674 * 241.40542 * 4 3 2 7 7 O 1.21283 * 120.00262 * 95.89715 * 6 4 3 8 8 N 1.34777 * 119.99928 * 275.61621 * 6 4 3 9 9 C 1.46499 * 120.00199 * 180.27479 * 8 6 4 10 10 C 1.53778 * 113.61975 * 254.14080 * 9 8 6 11 11 C 1.53946 * 87.02214 * 220.04641 * 10 9 8 12 12 C 1.52997 * 113.74469 * 139.94133 * 11 10 9 13 13 N 1.46504 * 109.47405 * 87.40290 * 12 11 10 14 14 C 1.36937 * 120.00576 * 180.02562 * 13 12 11 15 15 H 1.08007 * 119.99320 * 359.97438 * 14 13 12 16 16 C 1.38803 * 120.00345 * 180.02562 * 14 13 12 17 17 N 1.31616 * 119.99975 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99902 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47348 * 90.00522 * 18 16 14 20 20 H 1.48507 * 109.47407 * 210.00193 * 18 16 14 21 21 H 1.48497 * 109.47242 * 330.00417 * 18 16 14 22 22 C 1.53778 * 113.61783 * 156.52956 * 9 8 6 23 23 N 1.47050 * 103.86246 * 359.97438 * 4 3 2 24 24 C 1.33948 * 109.17987 * 0.02562 * 23 4 3 25 25 O 1.21585 * 123.04064 * 179.97438 * 24 23 4 26 26 H 1.09002 * 109.46810 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47203 * 299.97508 * 1 2 3 28 28 H 1.08999 * 109.47135 * 59.97312 * 1 2 3 29 29 H 1.09001 * 110.55172 * 61.40444 * 3 2 1 30 30 H 1.09003 * 110.55363 * 298.59600 * 3 2 1 31 31 H 0.97000 * 120.00317 * 0.28382 * 8 6 4 32 32 H 1.09004 * 112.84964 * 25.33489 * 9 8 6 33 33 H 1.09001 * 113.61335 * 334.56928 * 10 9 8 34 34 H 1.09000 * 113.61824 * 105.46531 * 10 9 8 35 35 H 1.08999 * 113.54003 * 270.80741 * 11 10 9 36 36 H 1.09001 * 109.47333 * 207.40424 * 12 11 10 37 37 H 1.09006 * 109.47146 * 327.40398 * 12 11 10 38 38 H 0.97001 * 119.99504 * 359.97438 * 13 12 11 39 39 H 0.97007 * 119.99637 * 180.02562 * 17 16 14 40 40 H 1.09002 * 113.61621 * 254.53540 * 22 9 8 41 41 H 1.09003 * 113.61369 * 25.35192 * 22 9 8 42 42 H 0.97000 * 125.41034 * 179.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3170 1.1985 0.0000 4 6 3.7504 0.6325 -0.0007 5 1 4.2877 0.9464 -0.8957 6 6 4.4909 1.0661 1.2382 7 8 4.5394 0.3333 2.2034 8 7 5.1039 2.2660 1.2716 9 6 5.8288 2.6850 2.4737 10 6 5.0938 3.7584 3.2936 11 6 6.4673 4.4190 3.5101 12 6 6.4358 5.9466 3.4297 13 7 6.1185 6.4987 4.7491 14 6 6.0346 7.8545 4.9219 15 1 6.2027 8.5169 4.0855 16 6 5.7345 8.3776 6.1721 17 7 5.6533 9.6807 6.3381 18 14 5.4444 7.2319 7.6188 19 1 6.7323 6.9730 8.3112 20 1 4.4911 7.8629 8.5666 21 1 4.8792 5.9491 7.1287 22 6 6.9120 3.7424 2.2027 23 7 3.5538 -0.8248 -0.0003 24 6 2.2412 -1.0917 -0.0002 25 8 1.7947 -2.2226 -0.0003 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5135 0.8902 28 1 -0.3633 0.5142 -0.8897 29 1 2.1406 1.7934 0.8961 30 1 2.1406 1.7935 -0.8961 31 1 5.0651 2.8521 0.4997 32 1 6.1799 1.8436 3.0712 33 1 4.4062 4.3640 2.7033 34 1 4.6430 3.3759 4.2094 35 1 6.9926 4.0525 4.3921 36 1 7.4101 6.3136 3.1069 37 1 5.6750 6.2571 2.7134 38 1 5.9671 5.9037 5.5001 39 1 5.4439 10.0462 7.2119 40 1 7.9271 3.3469 2.2390 41 1 6.7232 4.3427 1.3127 42 1 4.2621 -1.4875 -0.0010 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674570095.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:02 Heat of formation + Delta-G solvation = -7.526650 kcal Electronic energy + Delta-G solvation = -23512.717393 eV Core-core repulsion = 19915.645841 eV Total energy + Delta-G solvation = -3597.071552 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.74186 -40.07051 -38.51649 -36.52944 -34.85017 -34.47198 -33.53597 -31.25298 -29.88532 -27.82313 -27.03848 -25.71750 -24.57706 -22.97722 -21.51304 -20.94486 -20.81277 -19.74174 -18.12251 -18.00785 -17.57593 -16.80003 -16.34505 -15.76922 -15.45434 -15.21399 -14.70953 -14.51858 -14.43552 -14.24768 -13.87733 -13.69493 -13.51745 -12.97535 -12.78142 -12.71779 -12.46978 -12.44474 -12.07531 -11.89878 -11.60446 -11.03837 -10.87909 -10.65012 -10.46913 -10.35886 -10.26848 -10.06105 -9.62403 -9.58671 -9.25666 -9.02593 -8.90707 -7.25063 -5.79389 -3.14766 1.96493 2.28008 2.54657 2.92588 3.36297 3.39486 3.44315 3.47277 3.77747 4.14158 4.27726 4.47901 4.56263 4.58223 4.60145 4.82574 4.84034 4.88361 4.95270 5.12132 5.33218 5.44456 5.48516 5.52696 5.64264 5.71114 5.75910 5.83607 5.98123 6.05474 6.13736 6.22658 6.41151 6.62439 6.67163 6.73156 7.02771 7.15249 7.81408 7.96726 8.21155 8.39920 9.19285 9.91884 10.11694 11.39040 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.024366 B = 0.002681 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.878544 B =10440.825778 C =10860.934339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.636 5.636 3 C 0.106 3.894 4 C 0.104 3.896 5 H 0.117 0.883 6 C 0.500 3.500 7 O -0.521 6.521 8 N -0.711 5.711 9 C 0.117 3.883 10 C -0.141 4.141 11 C -0.116 4.116 12 C 0.170 3.830 13 N -0.756 5.756 14 C -0.245 4.245 15 H 0.089 0.911 16 C 0.004 3.996 17 N -0.935 5.935 18 Si 0.885 3.115 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.277 1.277 22 C -0.134 4.134 23 N -0.716 5.716 24 C 0.705 3.295 25 O -0.583 6.583 26 H 0.087 0.913 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.403 0.597 32 H 0.113 0.887 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.028 0.972 37 H 0.027 0.973 38 H 0.361 0.639 39 H 0.259 0.741 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.395 -17.683 -17.963 25.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.376 5.376 3 C -0.018 4.018 4 C -0.007 4.007 5 H 0.135 0.865 6 C 0.283 3.717 7 O -0.396 6.396 8 N -0.363 5.363 9 C 0.013 3.987 10 C -0.180 4.180 11 C -0.136 4.136 12 C 0.043 3.957 13 N -0.401 5.401 14 C -0.375 4.375 15 H 0.107 0.893 16 C -0.192 4.192 17 N -0.583 5.583 18 Si 0.715 3.285 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.203 1.203 22 C -0.173 4.173 23 N -0.377 5.377 24 C 0.405 3.595 25 O -0.460 6.460 26 H 0.106 0.894 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.237 0.763 32 H 0.130 0.870 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.110 0.890 36 H 0.046 0.954 37 H 0.045 0.955 38 H 0.194 0.806 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.107 0.893 42 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -4.790 -18.561 -17.310 25.828 hybrid contribution 0.179 -0.382 0.865 0.962 sum -4.611 -18.943 -16.445 25.505 Atomic orbital electron populations 1.21455 0.75171 1.04165 1.01596 1.46989 1.06554 1.05500 1.78554 1.22274 0.86065 0.89171 1.04335 1.21868 0.97355 0.83525 0.97939 0.86549 1.20770 0.79620 0.82024 0.89263 1.90772 1.59512 1.53101 1.36189 1.46047 1.53554 1.18307 1.18343 1.22714 0.93276 0.96348 0.86338 1.23518 0.97433 0.96732 1.00306 1.22620 0.96511 0.96993 0.97445 1.20571 0.97893 0.88647 0.88590 1.42712 1.86615 1.04587 1.06223 1.19057 1.40538 0.81525 0.96365 0.89280 1.24678 1.01755 0.95476 0.97306 1.69704 1.55538 1.09822 1.23203 0.86541 0.77923 0.80519 0.83509 1.21068 1.21728 1.20285 1.23312 0.98383 0.96575 0.99021 1.44822 1.07021 1.06078 1.79797 1.15804 0.81666 0.84680 0.77300 1.90967 1.75765 1.20907 1.58378 0.89442 0.91857 0.91839 0.89358 0.88557 0.76274 0.86953 0.89409 0.91261 0.88980 0.95434 0.95542 0.80639 0.93050 0.90780 0.89314 0.72372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.78 11.21 59.85 0.67 1.45 16 2 N -0.64 -5.63 3.36 -186.73 -0.63 -6.26 16 3 C 0.11 0.61 7.32 -3.16 -0.02 0.58 16 4 C 0.10 0.65 4.17 -68.20 -0.28 0.36 16 5 H 0.12 0.29 8.14 -51.93 -0.42 -0.13 16 6 C 0.50 4.57 6.93 -10.98 -0.08 4.50 16 7 O -0.52 -7.39 16.22 5.55 0.09 -7.30 16 8 N -0.71 -5.22 5.36 -53.02 -0.28 -5.51 16 9 C 0.12 1.17 4.21 -67.12 -0.28 0.89 16 10 C -0.14 -1.73 7.45 -25.83 -0.19 -1.93 16 11 C -0.12 -1.55 3.75 -89.72 -0.34 -1.89 16 12 C 0.17 3.02 6.10 -4.04 -0.02 2.99 16 13 N -0.76 -17.48 5.41 -59.91 -0.32 -17.80 16 14 C -0.24 -6.84 10.47 -15.06 -0.16 -7.00 16 15 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 16 C 0.00 0.10 5.50 -17.44 -0.10 0.01 16 17 N -0.93 -29.19 13.97 55.49 0.78 -28.42 16 18 Si 0.88 22.01 27.74 -169.99 -4.71 17.30 16 19 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 21 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 22 C -0.13 -1.27 7.39 -25.92 -0.19 -1.46 16 23 N -0.72 -6.53 5.63 -59.33 -0.33 -6.87 16 24 C 0.71 8.40 8.60 -88.40 -0.76 7.64 16 25 O -0.58 -9.30 17.29 5.29 0.09 -9.21 16 26 H 0.09 0.69 7.52 -51.93 -0.39 0.30 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.09 0.54 7.73 -51.93 -0.40 0.14 16 30 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.40 1.65 8.71 -40.82 -0.36 1.30 16 32 H 0.11 1.30 7.50 -51.93 -0.39 0.91 16 33 H 0.09 1.06 7.91 -51.93 -0.41 0.64 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.03 0.47 7.86 -51.93 -0.41 0.06 16 38 H 0.36 8.21 5.53 -40.82 -0.23 7.99 16 39 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 0.72 8.07 -51.93 -0.42 0.30 16 42 H 0.43 3.58 8.96 -40.82 -0.37 3.22 16 LS Contribution 350.11 15.07 5.28 5.28 Total: -1.00 -38.52 350.11 -8.14 -46.66 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -6.34 Total: 5.97 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -1.75 Total: 6.15 kcal Atomic # 7 Polarization: -64.06 SS G_CDS: -0.79 Total: -64.85 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: 0.18 Total: -16.50 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.71 Total: 17.30 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -38.52 -8.14 -46.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674570095.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.135 kcal (2) G-P(sol) polarization free energy of solvation -38.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds