Wall clock time and date at job start Tue Mar 31 2020 03:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.47050 * 125.40896 * 2 1 4 4 C 1.54108 * 103.86207 * 180.02562 * 3 2 1 5 5 H 1.09004 * 110.67317 * 118.65805 * 4 3 2 6 6 C 1.50702 * 110.54674 * 241.40542 * 4 3 2 7 7 O 1.21283 * 120.00262 * 95.89715 * 6 4 3 8 8 N 1.34777 * 119.99928 * 275.61621 * 6 4 3 9 9 C 1.46499 * 120.00199 * 180.27479 * 8 6 4 10 10 C 1.53778 * 113.61975 * 254.14080 * 9 8 6 11 11 C 1.53946 * 87.02214 * 220.04641 * 10 9 8 12 12 C 1.52997 * 113.74469 * 139.94133 * 11 10 9 13 13 N 1.46504 * 109.47405 * 87.40290 * 12 11 10 14 14 C 1.36937 * 120.00576 * 180.02562 * 13 12 11 15 15 H 1.08007 * 119.99320 * 359.97438 * 14 13 12 16 16 C 1.38803 * 120.00345 * 180.02562 * 14 13 12 17 17 N 1.31616 * 119.99975 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99902 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47348 * 90.00522 * 18 16 14 20 20 H 1.48507 * 109.47407 * 210.00193 * 18 16 14 21 21 H 1.48497 * 109.47242 * 330.00417 * 18 16 14 22 22 C 1.53778 * 113.61783 * 156.52956 * 9 8 6 23 23 N 1.47050 * 103.86246 * 359.97438 * 4 3 2 24 24 C 1.33948 * 109.17987 * 0.02562 * 23 4 3 25 25 O 1.21585 * 123.04064 * 179.97438 * 24 23 4 26 26 H 1.09002 * 109.46810 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47203 * 299.97508 * 1 2 3 28 28 H 1.08999 * 109.47135 * 59.97312 * 1 2 3 29 29 H 1.09001 * 110.55172 * 61.40444 * 3 2 1 30 30 H 1.09003 * 110.55363 * 298.59600 * 3 2 1 31 31 H 0.97000 * 120.00317 * 0.28382 * 8 6 4 32 32 H 1.09004 * 112.84964 * 25.33489 * 9 8 6 33 33 H 1.09001 * 113.61335 * 334.56928 * 10 9 8 34 34 H 1.09000 * 113.61824 * 105.46531 * 10 9 8 35 35 H 1.08999 * 113.54003 * 270.80741 * 11 10 9 36 36 H 1.09001 * 109.47333 * 207.40424 * 12 11 10 37 37 H 1.09006 * 109.47146 * 327.40398 * 12 11 10 38 38 H 0.97001 * 119.99504 * 359.97438 * 13 12 11 39 39 H 0.97007 * 119.99637 * 180.02562 * 17 16 14 40 40 H 1.09002 * 113.61621 * 254.53540 * 22 9 8 41 41 H 1.09003 * 113.61369 * 25.35192 * 22 9 8 42 42 H 0.97000 * 125.41034 * 179.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3170 1.1985 0.0000 4 6 3.7504 0.6325 -0.0007 5 1 4.2877 0.9464 -0.8957 6 6 4.4909 1.0661 1.2382 7 8 4.5394 0.3333 2.2034 8 7 5.1039 2.2660 1.2716 9 6 5.8288 2.6850 2.4737 10 6 5.0938 3.7584 3.2936 11 6 6.4673 4.4190 3.5101 12 6 6.4358 5.9466 3.4297 13 7 6.1185 6.4987 4.7491 14 6 6.0346 7.8545 4.9219 15 1 6.2027 8.5169 4.0855 16 6 5.7345 8.3776 6.1721 17 7 5.6533 9.6807 6.3381 18 14 5.4444 7.2319 7.6188 19 1 6.7323 6.9730 8.3112 20 1 4.4911 7.8629 8.5666 21 1 4.8792 5.9491 7.1287 22 6 6.9120 3.7424 2.2027 23 7 3.5538 -0.8248 -0.0003 24 6 2.2412 -1.0917 -0.0002 25 8 1.7947 -2.2226 -0.0003 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5135 0.8902 28 1 -0.3633 0.5142 -0.8897 29 1 2.1406 1.7934 0.8961 30 1 2.1406 1.7935 -0.8961 31 1 5.0651 2.8521 0.4997 32 1 6.1799 1.8436 3.0712 33 1 4.4062 4.3640 2.7033 34 1 4.6430 3.3759 4.2094 35 1 6.9926 4.0525 4.3921 36 1 7.4101 6.3136 3.1069 37 1 5.6750 6.2571 2.7134 38 1 5.9671 5.9037 5.5001 39 1 5.4439 10.0462 7.2119 40 1 7.9271 3.3469 2.2390 41 1 6.7232 4.3427 1.3127 42 1 4.2621 -1.4875 -0.0010 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674570095.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:01 Heat of formation + Delta-G solvation = -39.708296 kcal Electronic energy + Delta-G solvation = -23514.112894 eV Core-core repulsion = 19915.645841 eV Total energy + Delta-G solvation = -3598.467053 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.43412 -40.91678 -39.45511 -37.40034 -36.46853 -35.10961 -34.64490 -33.20802 -30.57833 -28.84839 -28.07234 -26.60458 -25.44150 -24.39947 -22.82409 -21.64640 -21.61256 -20.81423 -19.51824 -18.85031 -18.59974 -17.57886 -17.17042 -16.71026 -16.53518 -16.19514 -16.00574 -15.65564 -15.25970 -15.21439 -14.97321 -14.68673 -14.60822 -14.51453 -13.67125 -13.54630 -13.31822 -13.23595 -13.15747 -13.01331 -12.92784 -12.74980 -12.17696 -11.99895 -11.85004 -11.58280 -11.42555 -11.35038 -11.25687 -10.90685 -10.40338 -10.02993 -9.60315 -9.26056 -8.02574 -5.34719 1.30302 1.38142 1.40219 1.47757 1.61523 1.84097 2.17931 2.48267 2.91206 3.27001 3.29127 3.50358 3.55181 3.61738 3.85931 3.91969 3.94019 4.10161 4.11845 4.48765 4.52068 4.57930 4.64956 4.71050 4.85507 4.86330 4.91436 4.92275 4.99464 5.03131 5.14055 5.25100 5.42390 5.59566 5.65459 5.77643 6.00043 6.22410 6.32464 6.55090 7.09651 7.19414 7.41633 7.88105 8.04854 9.19049 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.024366 B = 0.002681 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.878544 B =10440.825778 C =10860.934339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.638 5.638 3 C 0.103 3.897 4 C 0.110 3.890 5 H 0.168 0.832 6 C 0.501 3.499 7 O -0.578 6.578 8 N -0.692 5.692 9 C 0.129 3.871 10 C -0.143 4.143 11 C -0.121 4.121 12 C 0.166 3.834 13 N -0.761 5.761 14 C -0.231 4.231 15 H 0.060 0.940 16 C -0.066 4.066 17 N -0.984 5.984 18 Si 0.953 3.047 19 H -0.279 1.279 20 H -0.297 1.297 21 H -0.254 1.254 22 C -0.112 4.112 23 N -0.715 5.715 24 C 0.691 3.309 25 O -0.637 6.637 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.141 0.859 31 H 0.423 0.577 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.049 0.951 35 H 0.085 0.915 36 H 0.026 0.974 37 H 0.032 0.968 38 H 0.364 0.636 39 H 0.257 0.743 40 H 0.087 0.913 41 H 0.111 0.889 42 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.196 -18.231 -19.806 27.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.377 5.377 3 C -0.020 4.020 4 C 0.000 4.000 5 H 0.185 0.815 6 C 0.286 3.714 7 O -0.456 6.456 8 N -0.345 5.345 9 C 0.023 3.977 10 C -0.182 4.182 11 C -0.140 4.140 12 C 0.040 3.960 13 N -0.407 5.407 14 C -0.362 4.362 15 H 0.078 0.922 16 C -0.257 4.257 17 N -0.635 5.635 18 Si 0.781 3.219 19 H -0.206 1.206 20 H -0.224 1.224 21 H -0.179 1.179 22 C -0.150 4.150 23 N -0.375 5.375 24 C 0.391 3.609 25 O -0.519 6.519 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.111 0.889 29 H 0.104 0.896 30 H 0.159 0.841 31 H 0.262 0.738 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.068 0.932 35 H 0.103 0.897 36 H 0.044 0.956 37 H 0.050 0.950 38 H 0.197 0.803 39 H 0.066 0.934 40 H 0.106 0.894 41 H 0.130 0.870 42 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -4.568 -19.078 -19.228 27.469 hybrid contribution 0.143 -0.129 1.360 1.374 sum -4.425 -19.207 -17.867 26.603 Atomic orbital electron populations 1.21614 0.74300 1.03462 1.03487 1.47200 1.07342 1.05730 1.77436 1.22610 0.84806 0.88159 1.06404 1.22187 0.98030 0.81639 0.98098 0.81460 1.21312 0.79008 0.81673 0.89428 1.90765 1.61619 1.54788 1.38440 1.45825 1.52356 1.18111 1.18165 1.22352 0.93070 0.95415 0.86845 1.23535 0.96966 0.97541 1.00167 1.22553 0.97943 0.93834 0.99702 1.20795 0.97593 0.91554 0.86018 1.42804 1.86501 1.02782 1.08573 1.19081 1.38385 0.83468 0.95301 0.92247 1.25489 1.02755 0.96993 1.00467 1.69879 1.57830 1.12046 1.23786 0.85435 0.77776 0.79166 0.79557 1.20558 1.22369 1.17852 1.23224 0.98869 0.95472 0.97476 1.44871 1.06156 1.07697 1.78822 1.16188 0.82691 0.84682 0.77380 1.90912 1.76889 1.23208 1.60910 0.91507 0.90928 0.88893 0.89620 0.84082 0.73812 0.88570 0.88833 0.93186 0.89654 0.95557 0.94992 0.80337 0.93398 0.89420 0.87021 0.72303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.34 11.21 127.77 1.43 2.77 16 2 N -0.64 -10.13 3.36 -863.42 -2.90 -13.02 16 3 C 0.10 0.79 7.32 86.65 0.63 1.42 16 4 C 0.11 0.97 4.17 44.52 0.19 1.16 16 5 H 0.17 -0.14 8.14 -2.38 -0.02 -0.16 16 6 C 0.50 7.82 6.93 87.66 0.61 8.42 16 7 O -0.58 -15.86 16.22 -3.04 -0.05 -15.91 16 8 N -0.69 -7.57 5.36 -440.04 -2.36 -9.93 16 9 C 0.13 2.20 4.21 45.52 0.19 2.39 16 10 C -0.14 -3.20 7.45 31.18 0.23 -2.97 16 11 C -0.12 -2.95 3.75 -10.21 -0.04 -2.98 16 12 C 0.17 5.59 6.10 86.38 0.53 6.11 16 13 N -0.76 -34.33 5.41 -343.44 -1.86 -36.19 16 14 C -0.23 -12.96 10.47 84.03 0.88 -12.08 16 15 H 0.06 3.62 8.06 -2.91 -0.02 3.59 16 16 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 17 N -0.98 -62.77 13.97 21.65 0.30 -62.46 16 18 Si 0.95 45.45 27.74 68.60 1.90 47.35 16 19 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 20 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 21 H -0.25 -10.99 6.52 99.48 0.65 -10.34 16 22 C -0.11 -1.70 7.39 31.12 0.23 -1.47 16 23 N -0.72 -12.02 5.63 -460.33 -2.59 -14.61 16 24 C 0.69 16.11 8.60 179.57 1.55 17.66 16 25 O -0.64 -21.05 17.29 -3.98 -0.07 -21.11 16 26 H 0.07 1.08 7.52 -2.39 -0.02 1.06 16 27 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.09 0.75 7.73 -2.39 -0.02 0.73 16 30 H 0.14 -0.10 8.14 -2.39 -0.02 -0.12 16 31 H 0.42 1.25 8.71 -92.71 -0.81 0.45 16 32 H 0.10 2.06 7.50 -2.39 -0.02 2.04 16 33 H 0.09 1.98 7.91 -2.39 -0.02 1.96 16 34 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.03 1.06 7.86 -2.38 -0.02 1.04 16 38 H 0.36 15.92 5.53 -92.71 -0.51 15.40 16 39 H 0.26 15.64 8.31 -92.70 -0.77 14.87 16 40 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.11 1.23 8.07 -2.39 -0.02 1.22 16 42 H 0.43 6.87 8.96 -92.71 -0.83 6.04 16 Total: -1.00 -88.40 350.11 -1.87 -90.27 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -1.15 Total: 18.57 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: 6.89 Total: 17.04 kcal Atomic # 7 Polarization: -126.82 SS G_CDS: -9.40 Total: -136.22 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -0.12 Total: -37.02 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.90 Total: 47.35 kcal Total: -88.40 -1.87 -90.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674570095.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.562 kcal (2) G-P(sol) polarization free energy of solvation -88.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds