Wall clock time and date at job start Tue Mar 31 2020 03:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40084 * 126.03058 * 2 1 4 4 C 1.30842 * 108.20250 * 179.73948 * 3 2 1 5 5 C 1.39868 * 108.20327 * 0.44521 * 4 3 2 6 6 C 1.34941 * 126.04014 * 180.02562 * 2 1 3 7 7 C 1.50696 * 126.13067 * 359.97438 * 6 2 1 8 8 C 1.53005 * 109.47260 * 265.00771 * 7 6 2 9 9 C 1.50696 * 109.47260 * 179.97438 * 8 7 6 10 10 O 1.21282 * 119.99856 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00298 * 179.97438 * 9 8 7 12 12 C 1.46499 * 120.00413 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47033 * 180.02562 * 12 11 9 14 14 H 1.08999 * 109.47035 * 294.99357 * 13 12 11 15 15 C 1.53005 * 109.46767 * 175.00427 * 13 12 11 16 16 O 1.42904 * 109.46655 * 304.99482 * 15 13 12 17 17 N 1.46501 * 109.47460 * 55.00153 * 13 12 11 18 18 C 1.36936 * 119.99812 * 204.99862 * 17 13 12 19 19 H 1.07998 * 119.99916 * 0.02562 * 18 17 13 20 20 C 1.38813 * 119.99755 * 179.97438 * 18 17 13 21 21 N 1.31622 * 119.99916 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00054 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47133 * 90.00043 * 22 20 18 24 24 H 1.48497 * 109.47493 * 210.00131 * 22 20 18 25 25 H 1.48500 * 109.47433 * 330.00315 * 22 20 18 26 26 H 1.08994 * 109.47427 * 269.96961 * 1 2 3 27 27 H 1.08999 * 109.47247 * 29.97548 * 1 2 3 28 28 H 1.09007 * 109.46720 * 149.97509 * 1 2 3 29 29 H 1.08007 * 125.90122 * 180.26287 * 4 3 2 30 30 H 1.08002 * 126.04477 * 179.82088 * 5 4 3 31 31 H 1.09002 * 109.46733 * 25.00405 * 7 6 2 32 32 H 1.08998 * 109.47609 * 145.00695 * 7 6 2 33 33 H 1.09002 * 109.46948 * 299.99502 * 8 7 6 34 34 H 1.08995 * 109.47549 * 59.99195 * 8 7 6 35 35 H 0.97005 * 119.99960 * 0.02562 * 11 9 8 36 36 H 1.09002 * 109.46998 * 300.00241 * 12 11 9 37 37 H 1.09004 * 109.47124 * 60.00004 * 12 11 9 38 38 H 1.08997 * 109.47694 * 64.99631 * 15 13 12 39 39 H 1.09001 * 109.46989 * 185.00160 * 15 13 12 40 40 H 0.96702 * 113.99543 * 180.02562 * 16 15 13 41 41 H 0.97001 * 119.99529 * 24.99604 * 17 13 12 42 42 H 0.97000 * 119.99883 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1329 0.0000 4 6 3.5346 0.7323 0.0057 5 6 3.5438 -0.6663 -0.0009 6 6 2.2589 -1.0911 -0.0005 7 6 1.7975 -2.5257 -0.0006 8 6 1.7614 -3.0500 1.4364 9 6 1.2994 -4.4844 1.4363 10 8 1.0255 -5.0332 0.3901 11 7 1.1905 -5.1574 2.5989 12 6 0.7408 -6.5516 2.5990 13 6 0.7048 -7.0758 4.0359 14 1 1.7171 -7.0994 4.4395 15 6 0.1178 -8.4887 4.0487 16 8 -1.1623 -8.4784 3.4137 17 7 -0.1280 -6.1935 4.8570 18 6 0.0748 -6.1239 6.2095 19 1 0.8490 -6.7191 6.6707 20 6 -0.7140 -5.2874 6.9873 21 7 -1.6571 -4.5617 6.4250 22 14 -0.4379 -5.1929 8.8323 23 1 0.5517 -4.1265 9.1308 24 1 -1.7219 -4.8803 9.5097 25 1 0.0762 -6.4966 9.3234 26 1 -0.3634 -0.0005 1.0276 27 1 -0.3634 0.8902 -0.5134 28 1 -0.3633 -0.8898 -0.5143 29 1 4.4053 1.3713 0.0112 30 1 4.4212 -1.2961 -0.0013 31 1 0.7995 -2.5863 -0.4346 32 1 2.4874 -3.1293 -0.5903 33 1 2.7594 -2.9894 1.8704 34 1 1.0715 -2.4464 2.0262 35 1 1.4092 -4.7183 3.4358 36 1 -0.2576 -6.6114 2.1656 37 1 1.4299 -7.1557 2.0086 38 1 0.7842 -9.1640 3.5120 39 1 0.0096 -8.8279 5.0790 40 1 -1.5945 -9.3430 3.3860 41 1 -0.8230 -5.6586 4.4425 42 1 -2.2085 -3.9775 6.9686 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676539546.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:48 Heat of formation + Delta-G solvation = -4.551845 kcal Electronic energy + Delta-G solvation = -23572.776024 eV Core-core repulsion = 19975.833470 eV Total energy + Delta-G solvation = -3596.942555 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.31698 -39.40355 -37.17746 -34.96479 -34.11260 -33.49369 -33.02664 -31.41512 -29.51499 -28.27231 -26.81334 -25.76851 -24.00916 -23.45606 -21.21809 -20.17956 -19.93019 -19.59934 -17.66336 -17.14290 -16.64058 -16.28906 -15.81595 -15.55193 -15.44029 -14.70041 -14.50229 -14.14192 -13.93701 -13.64715 -13.42377 -13.36068 -12.94584 -12.89755 -12.72704 -12.52378 -12.36358 -12.04175 -11.93671 -11.44332 -11.19306 -10.92429 -10.87345 -10.67818 -10.60116 -10.14007 -9.83722 -9.65473 -9.40490 -9.30343 -9.02144 -8.60536 -8.58100 -7.08277 -5.86056 -3.16412 1.77314 2.44157 2.75507 2.93243 3.35928 3.41729 3.43717 3.57434 4.46933 4.48637 4.52549 4.86849 4.89671 4.90819 5.05229 5.08408 5.23903 5.33037 5.38830 5.45380 5.48907 5.53809 5.57134 5.68047 5.72115 5.86924 5.95029 5.99573 6.02024 6.14363 6.34120 6.47789 6.57906 6.71234 6.88694 6.92521 7.58398 7.63694 7.92414 8.17272 8.31062 8.55991 9.43496 9.98442 10.34967 11.35527 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.013577 B = 0.003522 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.885298 B = 7948.230818 C = 9286.648756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.370 5.370 3 N -0.303 5.303 4 C 0.044 3.956 5 C -0.275 4.275 6 C 0.091 3.909 7 C -0.040 4.040 8 C -0.135 4.135 9 C 0.511 3.489 10 O -0.557 6.557 11 N -0.712 5.712 12 C 0.118 3.882 13 C 0.165 3.835 14 H 0.065 0.935 15 C 0.059 3.941 16 O -0.560 6.560 17 N -0.713 5.713 18 C -0.249 4.249 19 H 0.070 0.930 20 C -0.007 4.007 21 N -0.926 5.926 22 Si 0.906 3.094 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.282 1.282 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.182 0.818 30 H 0.147 0.853 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.410 0.590 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.027 0.973 39 H 0.048 0.952 40 H 0.364 0.636 41 H 0.389 0.611 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.975 2.883 -11.753 14.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.153 5.153 3 N -0.124 5.124 4 C -0.141 4.141 5 C -0.304 4.304 6 C -0.037 4.037 7 C -0.080 4.080 8 C -0.175 4.175 9 C 0.297 3.703 10 O -0.436 6.436 11 N -0.363 5.363 12 C -0.006 4.006 13 C 0.054 3.946 14 H 0.083 0.917 15 C -0.022 4.022 16 O -0.364 6.364 17 N -0.355 5.355 18 C -0.380 4.380 19 H 0.088 0.912 20 C -0.204 4.204 21 N -0.573 5.573 22 Si 0.737 3.263 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 H 0.097 0.903 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.198 0.802 30 H 0.165 0.835 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.246 0.754 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.045 0.955 39 H 0.067 0.933 40 H 0.209 0.791 41 H 0.223 0.777 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.017 4.154 -12.362 14.809 hybrid contribution 0.330 -0.913 1.624 1.892 sum 7.346 3.241 -10.737 13.408 Atomic orbital electron populations 1.21915 0.74318 1.04477 1.03878 1.48524 1.06606 1.03410 1.56718 1.77353 1.01900 1.08055 1.25106 1.23810 0.95193 0.95127 0.99978 1.21254 0.96299 0.94993 1.17865 1.21147 0.91335 0.90437 1.00780 1.19977 1.03504 0.87659 0.96847 1.21591 1.04163 0.93852 0.97943 1.20445 0.77764 0.88211 0.83868 1.90670 1.51062 1.70267 1.31618 1.46012 1.66984 1.13988 1.09305 1.21540 1.00238 0.81035 0.97792 1.20595 0.94994 0.89256 0.89741 0.91682 1.23038 0.84127 0.99239 0.95837 1.86568 1.33618 1.34780 1.81395 1.42371 1.39987 1.48889 1.04246 1.19218 1.14387 1.20701 0.83672 0.91187 1.24739 0.98220 0.99487 0.97940 1.69676 1.22929 1.30106 1.34631 0.86224 0.76963 0.77629 0.85499 1.21664 1.21783 1.20806 0.90313 0.89329 0.89248 0.80152 0.83549 0.89915 0.88402 0.88372 0.88764 0.75377 0.90656 0.92162 0.95520 0.93330 0.79148 0.77702 0.93427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.88 11.27 59.85 0.67 1.56 16 2 N -0.37 -4.56 4.01 -63.89 -0.26 -4.81 16 3 N -0.30 -4.08 12.58 30.63 0.39 -3.70 16 4 C 0.04 0.50 12.03 -17.36 -0.21 0.29 16 5 C -0.27 -3.07 10.72 -40.01 -0.43 -3.50 16 6 C 0.09 1.07 6.19 -82.27 -0.51 0.56 16 7 C -0.04 -0.45 4.79 -27.88 -0.13 -0.59 16 8 C -0.13 -1.60 5.68 -27.88 -0.16 -1.76 16 9 C 0.51 7.86 7.83 -10.99 -0.09 7.78 16 10 O -0.56 -10.14 15.98 5.56 0.09 -10.06 16 11 N -0.71 -11.46 5.39 -60.29 -0.32 -11.78 16 12 C 0.12 2.03 5.12 -4.04 -0.02 2.01 16 13 C 0.17 3.04 2.84 -67.93 -0.19 2.85 16 14 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 15 C 0.06 1.00 6.86 37.16 0.25 1.25 16 16 O -0.56 -9.78 12.64 -35.23 -0.45 -10.23 16 17 N -0.71 -16.55 4.51 -53.42 -0.24 -16.79 16 18 C -0.25 -6.41 9.93 -15.06 -0.15 -6.56 16 19 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 20 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 21 N -0.93 -26.78 13.06 55.49 0.72 -26.06 16 22 Si 0.91 21.39 29.55 -169.99 -5.02 16.36 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.09 0.70 6.98 -51.92 -0.36 0.33 16 29 H 0.18 1.43 8.06 -52.48 -0.42 1.01 16 30 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.08 0.93 6.90 -51.93 -0.36 0.58 16 32 H 0.10 1.07 8.10 -51.93 -0.42 0.65 16 33 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.41 6.65 8.14 -40.82 -0.33 6.32 16 36 H 0.08 1.47 7.39 -51.93 -0.38 1.09 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.36 4.55 9.12 45.56 0.42 4.96 16 41 H 0.39 10.02 7.80 -40.82 -0.32 9.70 16 42 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 359.53 15.07 5.42 5.42 Total: -1.00 -33.61 359.53 -6.26 -39.87 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: -5.53 Total: 18.16 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -1.05 Total: 3.62 kcal Atomic # 7 Polarization: -63.43 SS G_CDS: 0.29 Total: -63.14 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.36 Total: -20.29 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.61 -6.26 -39.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676539546.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.317 kcal (2) G-P(sol) polarization free energy of solvation -33.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds