Wall clock time and date at job start Tue Mar 31 2020 03:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40084 * 126.03058 * 2 1 4 4 C 1.30842 * 108.20250 * 179.73948 * 3 2 1 5 5 C 1.39868 * 108.20327 * 0.44521 * 4 3 2 6 6 C 1.34941 * 126.04014 * 180.02562 * 2 1 3 7 7 C 1.50696 * 126.13067 * 359.97438 * 6 2 1 8 8 C 1.53005 * 109.47260 * 265.00771 * 7 6 2 9 9 C 1.50696 * 109.47260 * 179.97438 * 8 7 6 10 10 O 1.21282 * 119.99856 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00298 * 179.97438 * 9 8 7 12 12 C 1.46499 * 120.00413 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47033 * 180.02562 * 12 11 9 14 14 H 1.08999 * 109.47035 * 294.99357 * 13 12 11 15 15 C 1.53005 * 109.46767 * 175.00427 * 13 12 11 16 16 O 1.42904 * 109.46655 * 304.99482 * 15 13 12 17 17 N 1.46501 * 109.47460 * 55.00153 * 13 12 11 18 18 C 1.36936 * 119.99812 * 204.99862 * 17 13 12 19 19 H 1.07998 * 119.99916 * 0.02562 * 18 17 13 20 20 C 1.38813 * 119.99755 * 179.97438 * 18 17 13 21 21 N 1.31622 * 119.99916 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00054 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47133 * 90.00043 * 22 20 18 24 24 H 1.48497 * 109.47493 * 210.00131 * 22 20 18 25 25 H 1.48500 * 109.47433 * 330.00315 * 22 20 18 26 26 H 1.08994 * 109.47427 * 269.96961 * 1 2 3 27 27 H 1.08999 * 109.47247 * 29.97548 * 1 2 3 28 28 H 1.09007 * 109.46720 * 149.97509 * 1 2 3 29 29 H 1.08007 * 125.90122 * 180.26287 * 4 3 2 30 30 H 1.08002 * 126.04477 * 179.82088 * 5 4 3 31 31 H 1.09002 * 109.46733 * 25.00405 * 7 6 2 32 32 H 1.08998 * 109.47609 * 145.00695 * 7 6 2 33 33 H 1.09002 * 109.46948 * 299.99502 * 8 7 6 34 34 H 1.08995 * 109.47549 * 59.99195 * 8 7 6 35 35 H 0.97005 * 119.99960 * 0.02562 * 11 9 8 36 36 H 1.09002 * 109.46998 * 300.00241 * 12 11 9 37 37 H 1.09004 * 109.47124 * 60.00004 * 12 11 9 38 38 H 1.08997 * 109.47694 * 64.99631 * 15 13 12 39 39 H 1.09001 * 109.46989 * 185.00160 * 15 13 12 40 40 H 0.96702 * 113.99543 * 180.02562 * 16 15 13 41 41 H 0.97001 * 119.99529 * 24.99604 * 17 13 12 42 42 H 0.97000 * 119.99883 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1329 0.0000 4 6 3.5346 0.7323 0.0057 5 6 3.5438 -0.6663 -0.0009 6 6 2.2589 -1.0911 -0.0005 7 6 1.7975 -2.5257 -0.0006 8 6 1.7614 -3.0500 1.4364 9 6 1.2994 -4.4844 1.4363 10 8 1.0255 -5.0332 0.3901 11 7 1.1905 -5.1574 2.5989 12 6 0.7408 -6.5516 2.5990 13 6 0.7048 -7.0758 4.0359 14 1 1.7171 -7.0994 4.4395 15 6 0.1178 -8.4887 4.0487 16 8 -1.1623 -8.4784 3.4137 17 7 -0.1280 -6.1935 4.8570 18 6 0.0748 -6.1239 6.2095 19 1 0.8490 -6.7191 6.6707 20 6 -0.7140 -5.2874 6.9873 21 7 -1.6571 -4.5617 6.4250 22 14 -0.4379 -5.1929 8.8323 23 1 0.5517 -4.1265 9.1308 24 1 -1.7219 -4.8803 9.5097 25 1 0.0762 -6.4966 9.3234 26 1 -0.3634 -0.0005 1.0276 27 1 -0.3634 0.8902 -0.5134 28 1 -0.3633 -0.8898 -0.5143 29 1 4.4053 1.3713 0.0112 30 1 4.4212 -1.2961 -0.0013 31 1 0.7995 -2.5863 -0.4346 32 1 2.4874 -3.1293 -0.5903 33 1 2.7594 -2.9894 1.8704 34 1 1.0715 -2.4464 2.0262 35 1 1.4092 -4.7183 3.4358 36 1 -0.2576 -6.6114 2.1656 37 1 1.4299 -7.1557 2.0086 38 1 0.7842 -9.1640 3.5120 39 1 0.0096 -8.8279 5.0790 40 1 -1.5945 -9.3430 3.3860 41 1 -0.8230 -5.6586 4.4425 42 1 -2.2085 -3.9775 6.9686 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676539546.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:48 Heat of formation + Delta-G solvation = -31.220112 kcal Electronic energy + Delta-G solvation = -23573.932447 eV Core-core repulsion = 19975.833470 eV Total energy + Delta-G solvation = -3598.098978 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.18347 -40.68415 -38.61603 -36.39088 -35.20335 -35.03354 -33.87764 -33.10904 -30.65889 -29.79913 -27.59843 -26.98191 -25.69118 -24.80758 -22.06440 -21.61050 -21.16393 -20.52824 -19.41235 -18.23208 -18.13890 -17.43621 -17.09887 -16.70199 -16.50644 -16.20571 -15.62835 -15.48416 -15.14338 -14.93127 -14.84179 -14.50615 -14.37656 -14.02980 -13.70539 -13.58014 -13.33410 -13.18940 -12.99757 -12.97233 -12.74085 -12.61868 -12.24672 -12.12446 -11.86628 -11.72749 -11.56224 -11.04848 -10.84817 -10.70749 -10.22562 -9.95148 -9.45090 -8.99584 -7.90045 -5.18666 0.89057 1.50616 1.51336 1.58974 1.64468 1.69645 1.90790 2.36530 2.58374 3.42599 3.54716 3.63305 3.73614 3.92192 3.94255 3.98511 4.04851 4.19730 4.35029 4.37643 4.47189 4.55704 4.59049 4.62542 4.63540 4.66415 4.84089 4.91146 4.92052 5.02039 5.05734 5.25980 5.29790 5.53795 5.58364 5.77762 6.09498 6.29211 6.64261 6.77418 7.07336 7.29817 7.37764 8.10423 8.35480 9.32723 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.013577 B = 0.003522 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.885298 B = 7948.230818 C = 9286.648756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.381 5.381 3 N -0.338 5.338 4 C 0.041 3.959 5 C -0.280 4.280 6 C 0.082 3.918 7 C -0.031 4.031 8 C -0.124 4.124 9 C 0.512 3.488 10 O -0.585 6.585 11 N -0.713 5.713 12 C 0.130 3.870 13 C 0.161 3.839 14 H 0.079 0.921 15 C 0.063 3.937 16 O -0.584 6.584 17 N -0.722 5.722 18 C -0.236 4.236 19 H 0.081 0.919 20 C -0.069 4.069 21 N -0.966 5.966 22 Si 0.966 3.034 23 H -0.287 1.287 24 H -0.304 1.304 25 H -0.270 1.270 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.101 0.899 29 H 0.210 0.790 30 H 0.167 0.833 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.118 0.882 34 H 0.094 0.906 35 H 0.410 0.590 36 H 0.049 0.951 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.035 0.965 40 H 0.385 0.615 41 H 0.373 0.627 42 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.717 2.141 -11.800 15.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.164 5.164 3 N -0.160 5.160 4 C -0.144 4.144 5 C -0.309 4.309 6 C -0.046 4.046 7 C -0.070 4.070 8 C -0.164 4.164 9 C 0.299 3.701 10 O -0.467 6.467 11 N -0.364 5.364 12 C 0.005 3.995 13 C 0.051 3.949 14 H 0.097 0.903 15 C -0.018 4.018 16 O -0.390 6.390 17 N -0.362 5.362 18 C -0.368 4.368 19 H 0.099 0.901 20 C -0.262 4.262 21 N -0.616 5.616 22 Si 0.796 3.204 23 H -0.214 1.214 24 H -0.231 1.231 25 H -0.195 1.195 26 H 0.097 0.903 27 H 0.115 0.885 28 H 0.120 0.880 29 H 0.226 0.774 30 H 0.184 0.816 31 H 0.097 0.903 32 H 0.120 0.880 33 H 0.136 0.864 34 H 0.112 0.888 35 H 0.246 0.754 36 H 0.067 0.933 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.053 0.947 40 H 0.233 0.767 41 H 0.204 0.796 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 8.796 3.359 -12.417 15.583 hybrid contribution -0.173 -0.767 1.550 1.738 sum 8.624 2.592 -10.867 14.113 Atomic orbital electron populations 1.22100 0.73296 1.05556 1.04260 1.48774 1.07443 1.03310 1.56825 1.77307 1.03001 1.09151 1.26552 1.24364 0.95444 0.95801 0.98749 1.21597 0.96761 0.95268 1.17242 1.21291 0.91775 0.90431 1.01108 1.19875 1.03411 0.87471 0.96259 1.21545 1.05027 0.91178 0.98680 1.20978 0.76816 0.89251 0.83024 1.90656 1.52319 1.71202 1.32492 1.46034 1.66945 1.13775 1.09622 1.21348 0.99297 0.81963 0.96896 1.20855 0.94856 0.89451 0.89700 0.90287 1.22893 0.84681 0.98444 0.95742 1.86521 1.34194 1.36977 1.81358 1.42474 1.40143 1.49704 1.03895 1.19609 1.13279 1.19046 0.84840 0.90126 1.25438 0.98807 1.00265 1.01665 1.69832 1.24518 1.31649 1.35644 0.85251 0.76079 0.77916 0.81113 1.21445 1.23139 1.19540 0.90258 0.88468 0.88041 0.77372 0.81572 0.90341 0.88010 0.86375 0.88765 0.75371 0.93267 0.90422 0.91636 0.94669 0.76707 0.79550 0.94331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.60 11.27 127.77 1.44 3.04 16 2 N -0.38 -9.11 4.01 -356.04 -1.43 -10.54 16 3 N -0.34 -8.86 12.58 -57.02 -0.72 -9.58 16 4 C 0.04 0.87 12.03 85.23 1.02 1.89 16 5 C -0.28 -5.72 10.72 21.99 0.24 -5.49 16 6 C 0.08 1.82 6.19 41.41 0.26 2.08 16 7 C -0.03 -0.65 4.79 29.85 0.14 -0.50 16 8 C -0.12 -2.77 5.68 29.85 0.17 -2.60 16 9 C 0.51 15.22 7.83 87.66 0.69 15.91 16 10 O -0.59 -20.87 15.98 -3.04 -0.05 -20.92 16 11 N -0.71 -22.26 5.39 -463.06 -2.49 -24.76 16 12 C 0.13 4.29 5.12 86.38 0.44 4.73 16 13 C 0.16 5.65 2.84 44.99 0.13 5.78 16 14 H 0.08 2.58 8.08 -2.39 -0.02 2.56 16 15 C 0.06 1.99 6.86 71.98 0.49 2.49 16 16 O -0.58 -19.60 12.64 -148.98 -1.88 -21.49 16 17 N -0.72 -33.13 4.51 -322.93 -1.46 -34.59 16 18 C -0.24 -11.94 9.93 84.03 0.83 -11.11 16 19 H 0.08 3.85 7.83 -2.91 -0.02 3.82 16 20 C -0.07 -3.73 5.50 84.86 0.47 -3.27 16 21 N -0.97 -56.75 13.06 21.65 0.28 -56.46 16 22 Si 0.97 43.91 29.55 68.60 2.03 45.94 16 23 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 24 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 26 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.10 1.53 6.98 -2.38 -0.02 1.52 16 29 H 0.21 2.86 8.06 -2.91 -0.02 2.84 16 30 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 31 H 0.08 1.71 6.90 -2.39 -0.02 1.70 16 32 H 0.10 2.07 8.10 -2.39 -0.02 2.05 16 33 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.41 12.93 8.14 -92.70 -0.75 12.17 16 36 H 0.05 1.91 7.39 -2.39 -0.02 1.89 16 37 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.38 8.98 9.12 -74.06 -0.68 8.30 16 41 H 0.37 19.42 7.80 -92.71 -0.72 18.70 16 42 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -71.63 359.53 -0.49 -72.12 By element: Atomic # 1 Polarization: 48.40 SS G_CDS: -1.10 Total: 47.30 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 6.32 Total: 12.96 kcal Atomic # 7 Polarization: -130.11 SS G_CDS: -5.81 Total: -135.92 kcal Atomic # 8 Polarization: -40.47 SS G_CDS: -1.93 Total: -42.41 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -71.63 -0.49 -72.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676539546.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.904 kcal (2) G-P(sol) polarization free energy of solvation -71.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds