Wall clock time and date at job start Tue Mar 31 2020 03:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36886 * 126.39774 * 2 1 4 4 C 1.34665 * 106.81539 * 180.02562 * 3 2 1 5 5 N 1.34121 * 108.02106 * 359.78704 * 4 3 2 6 6 C 1.30503 * 109.26063 * 0.36389 * 5 4 3 7 7 C 1.50697 * 125.65078 * 179.89850 * 6 5 4 8 8 C 1.53004 * 109.46812 * 269.69294 * 7 6 5 9 9 C 1.50700 * 109.47007 * 180.02562 * 8 7 6 10 10 O 1.21280 * 120.00133 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00028 * 179.97438 * 9 8 7 12 12 C 1.46502 * 119.99947 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.46925 * 180.02562 * 12 11 9 14 14 H 1.08995 * 109.47216 * 295.00133 * 13 12 11 15 15 C 1.52999 * 109.47083 * 175.00128 * 13 12 11 16 16 O 1.42898 * 109.47018 * 305.00136 * 15 13 12 17 17 N 1.46498 * 109.47065 * 55.00022 * 13 12 11 18 18 C 1.36943 * 119.99752 * 204.72207 * 17 13 12 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 13 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 13 21 21 N 1.31611 * 120.00081 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99814 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47483 * 90.00178 * 22 20 18 24 24 H 1.48498 * 109.47011 * 210.00042 * 22 20 18 25 25 H 1.48502 * 109.47495 * 329.99664 * 22 20 18 26 26 H 1.09009 * 109.46905 * 269.96939 * 1 2 3 27 27 H 1.08999 * 109.47205 * 29.96317 * 1 2 3 28 28 H 1.08998 * 109.47635 * 149.96870 * 1 2 3 29 29 H 1.08005 * 126.58698 * 0.06863 * 3 2 1 30 30 H 1.08002 * 125.98574 * 180.02562 * 4 3 2 31 31 H 1.08997 * 109.46995 * 149.69665 * 7 6 5 32 32 H 1.08991 * 109.47446 * 29.68991 * 7 6 5 33 33 H 1.08992 * 109.47460 * 60.00230 * 8 7 6 34 34 H 1.08999 * 109.47047 * 299.99771 * 8 7 6 35 35 H 0.96997 * 119.99994 * 0.02562 * 11 9 8 36 36 H 1.08997 * 109.46993 * 60.00870 * 12 11 9 37 37 H 1.08999 * 109.47017 * 300.00291 * 12 11 9 38 38 H 1.09003 * 109.47083 * 65.00130 * 15 13 12 39 39 H 1.08995 * 109.47300 * 184.99893 * 15 13 12 40 40 H 0.96709 * 114.00043 * 179.97438 * 16 15 13 41 41 H 0.97001 * 120.00384 * 25.00562 * 17 13 12 42 42 H 0.97008 * 120.00329 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5460 0.6505 -0.0006 5 7 3.5095 -0.6902 0.0038 6 6 2.2662 -1.0870 -0.0007 7 6 1.8018 -2.5206 -0.0002 8 6 1.6433 -3.0058 -1.4426 9 6 1.1783 -4.4393 -1.4421 10 8 0.9924 -5.0162 -0.3916 11 7 0.9690 -5.0802 -2.6091 12 6 0.5174 -6.4739 -2.6086 13 6 0.3588 -6.9591 -4.0510 14 1 -0.4387 -6.3977 -4.5376 15 6 0.0084 -8.4484 -4.0525 16 8 0.9955 -9.1707 -3.3136 17 7 1.6145 -6.7521 -4.7767 18 6 1.6038 -6.6194 -6.1396 19 1 0.6692 -6.6629 -6.6790 20 6 2.7942 -6.4291 -6.8278 21 7 2.7839 -6.3010 -8.1376 22 14 4.4108 -6.3546 -5.8948 23 1 4.9819 -7.7210 -5.7841 24 1 5.3626 -5.4778 -6.6230 25 1 4.1731 -5.8059 -4.5355 26 1 -0.3633 -0.0005 1.0278 27 1 -0.3633 0.8903 -0.5133 28 1 -0.3634 -0.8897 -0.5143 29 1 1.9612 2.1346 0.0010 30 1 4.4368 1.2611 -0.0003 31 1 0.8436 -2.5919 0.5144 32 1 2.5369 -3.1405 0.5129 33 1 2.6014 -2.9346 -1.9573 34 1 0.9082 -2.3859 -1.9558 35 1 1.1180 -4.6190 -3.4493 36 1 -0.4406 -6.5452 -2.0936 37 1 1.2528 -7.0939 -2.0958 38 1 -0.9685 -8.5923 -3.5908 39 1 -0.0173 -8.8146 -5.0788 40 1 0.8366 -10.1238 -3.2723 41 1 2.4540 -6.7132 -4.2922 42 1 3.6157 -6.1676 -8.6186 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676560330.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:56 Heat of formation + Delta-G solvation = -15.110710 kcal Electronic energy + Delta-G solvation = -23680.335193 eV Core-core repulsion = 20082.934771 eV Total energy + Delta-G solvation = -3597.400422 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.24579 -39.52414 -37.31141 -35.07146 -34.26061 -33.69900 -33.56339 -31.54268 -29.45326 -28.66932 -27.28637 -25.83854 -24.00514 -23.19620 -21.54136 -20.26670 -20.03671 -19.73436 -17.96775 -17.37917 -16.90430 -16.59125 -16.00299 -15.81039 -15.59005 -14.87026 -14.50348 -14.30054 -13.94285 -13.64601 -13.55121 -13.37191 -13.29449 -13.00638 -12.92538 -12.79431 -12.53057 -12.34033 -12.09624 -11.61160 -11.24403 -11.00800 -10.86433 -10.71945 -10.12819 -10.08773 -9.79560 -9.71480 -9.66169 -9.47635 -9.01700 -8.72426 -8.52542 -7.37059 -5.84915 -3.21554 1.84046 2.57144 2.83375 2.98819 3.37253 3.43018 3.45659 3.49096 4.31866 4.41208 4.54934 4.60296 4.75311 4.79438 4.85126 4.95346 5.05817 5.12736 5.19459 5.26264 5.36203 5.43221 5.44617 5.51341 5.79020 5.82031 5.89677 5.91245 5.94043 6.10082 6.20241 6.36550 6.59488 6.60473 6.77714 6.98352 7.80687 7.88266 7.98293 8.09256 8.33965 8.45401 9.12035 9.84769 10.04584 11.32629 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.014808 B = 0.003684 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.373789 B = 7597.990815 C = 8720.743017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.459 5.459 3 C -0.063 4.063 4 C -0.028 4.028 5 N -0.488 5.488 6 C 0.211 3.789 7 C -0.017 4.017 8 C -0.137 4.137 9 C 0.512 3.488 10 O -0.553 6.553 11 N -0.716 5.716 12 C 0.115 3.885 13 C 0.172 3.828 14 H 0.074 0.926 15 C 0.059 3.941 16 O -0.565 6.565 17 N -0.739 5.739 18 C -0.253 4.253 19 H 0.090 0.910 20 C 0.011 3.989 21 N -0.931 5.931 22 Si 0.884 3.116 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.276 1.276 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.173 0.827 30 H 0.169 0.831 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.409 0.591 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.030 0.970 39 H 0.054 0.946 40 H 0.366 0.634 41 H 0.366 0.634 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.970 10.956 15.614 20.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.143 5.143 3 C -0.196 4.196 4 C -0.176 4.176 5 N -0.206 5.206 6 C -0.052 4.052 7 C -0.056 4.056 8 C -0.178 4.178 9 C 0.298 3.702 10 O -0.432 6.432 11 N -0.368 5.368 12 C -0.009 4.009 13 C 0.061 3.939 14 H 0.091 0.909 15 C -0.022 4.022 16 O -0.368 6.368 17 N -0.382 5.382 18 C -0.382 4.382 19 H 0.108 0.892 20 C -0.185 4.185 21 N -0.577 5.577 22 Si 0.714 3.286 23 H -0.210 1.210 24 H -0.218 1.218 25 H -0.202 1.202 26 H 0.096 0.904 27 H 0.105 0.895 28 H 0.108 0.892 29 H 0.191 0.809 30 H 0.186 0.814 31 H 0.103 0.897 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.108 0.892 35 H 0.246 0.754 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.049 0.951 39 H 0.072 0.928 40 H 0.211 0.789 41 H 0.200 0.800 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.396 10.682 16.163 20.737 hybrid contribution 0.307 0.340 -0.162 0.486 sum -7.089 11.021 16.001 20.682 Atomic orbital electron populations 1.22084 0.76692 1.04884 1.03718 1.45331 1.07583 1.06678 1.54659 1.22687 0.91437 0.92484 1.12991 1.22322 0.96439 0.91231 1.07613 1.70284 1.18536 1.12011 1.19777 1.23314 0.85765 0.90874 1.05213 1.19700 1.03050 0.86227 0.96630 1.21616 1.04224 0.93731 0.98201 1.20445 0.77403 0.88459 0.83907 1.90678 1.52493 1.68668 1.31328 1.46049 1.67681 1.14184 1.08882 1.21597 0.99964 0.81333 0.98027 1.20564 0.91182 0.91985 0.90172 0.90865 1.22999 0.89081 0.95024 0.95139 1.86523 1.51812 1.22479 1.76031 1.42738 1.02905 1.87752 1.04794 1.19036 0.95226 1.42849 0.81099 0.89198 1.24637 0.97279 1.01399 0.95206 1.69697 1.26591 1.55743 1.05709 0.86571 0.84904 0.77878 0.79240 1.21006 1.21792 1.20188 0.90424 0.89502 0.89219 0.80950 0.81359 0.89664 0.87826 0.87921 0.89223 0.75442 0.91737 0.90615 0.95142 0.92778 0.78851 0.80020 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.40 10.79 59.85 0.65 1.04 16 2 N -0.46 -4.52 3.15 -121.27 -0.38 -4.90 16 3 C -0.06 -0.60 11.58 -16.56 -0.19 -0.79 16 4 C -0.03 -0.32 11.87 -17.82 -0.21 -0.54 16 5 N -0.49 -7.09 11.25 -10.82 -0.12 -7.21 16 6 C 0.21 2.62 7.16 -155.42 -1.11 1.51 16 7 C -0.02 -0.20 4.60 -27.88 -0.13 -0.32 16 8 C -0.14 -1.64 5.68 -27.88 -0.16 -1.80 16 9 C 0.51 7.72 7.83 -10.99 -0.09 7.64 16 10 O -0.55 -9.87 15.98 5.56 0.09 -9.78 16 11 N -0.72 -11.15 5.39 -60.29 -0.32 -11.47 16 12 C 0.12 1.89 5.12 -4.04 -0.02 1.87 16 13 C 0.17 3.05 2.84 -67.93 -0.19 2.86 16 14 H 0.07 1.26 8.08 -51.93 -0.42 0.84 16 15 C 0.06 0.96 6.85 37.16 0.25 1.21 16 16 O -0.56 -9.35 12.64 -35.23 -0.45 -9.80 16 17 N -0.74 -16.43 4.31 -53.43 -0.23 -16.66 16 18 C -0.25 -6.69 10.41 -15.06 -0.16 -6.84 16 19 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 20 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 21 N -0.93 -28.31 13.97 55.49 0.78 -27.54 16 22 Si 0.88 22.09 27.74 -169.99 -4.71 17.38 16 23 H -0.28 -7.22 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 26 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 27 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.09 0.48 7.66 -51.93 -0.40 0.08 16 29 H 0.17 1.03 8.06 -52.48 -0.42 0.60 16 30 H 0.17 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.08 0.89 7.66 -51.93 -0.40 0.49 16 32 H 0.10 1.37 8.10 -51.93 -0.42 0.95 16 33 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.41 6.34 8.14 -40.82 -0.33 6.01 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.08 1.40 7.39 -51.93 -0.38 1.02 16 38 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.37 4.29 9.12 45.56 0.42 4.71 16 41 H 0.37 8.51 5.66 -40.82 -0.23 8.28 16 42 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 356.67 15.07 5.37 5.37 Total: -1.00 -35.79 356.67 -7.00 -42.78 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: -5.56 Total: 15.77 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -1.45 Total: 6.06 kcal Atomic # 7 Polarization: -67.50 SS G_CDS: -0.28 Total: -67.79 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.36 Total: -19.58 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.71 Total: 17.38 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.79 -7.00 -42.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676560330.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.673 kcal (2) G-P(sol) polarization free energy of solvation -35.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds