Wall clock time and date at job start Tue Mar 31 2020 03:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36886 * 126.39774 * 2 1 4 4 C 1.34665 * 106.81539 * 180.02562 * 3 2 1 5 5 N 1.34121 * 108.02106 * 359.78704 * 4 3 2 6 6 C 1.30503 * 109.26063 * 0.36389 * 5 4 3 7 7 C 1.50697 * 125.65078 * 179.89850 * 6 5 4 8 8 C 1.53004 * 109.46812 * 269.69294 * 7 6 5 9 9 C 1.50700 * 109.47007 * 180.02562 * 8 7 6 10 10 O 1.21280 * 120.00133 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00028 * 179.97438 * 9 8 7 12 12 C 1.46502 * 119.99947 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.46925 * 180.02562 * 12 11 9 14 14 H 1.08995 * 109.47216 * 295.00133 * 13 12 11 15 15 C 1.52999 * 109.47083 * 175.00128 * 13 12 11 16 16 O 1.42898 * 109.47018 * 305.00136 * 15 13 12 17 17 N 1.46498 * 109.47065 * 55.00022 * 13 12 11 18 18 C 1.36943 * 119.99752 * 204.72207 * 17 13 12 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 13 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 13 21 21 N 1.31611 * 120.00081 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99814 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47483 * 90.00178 * 22 20 18 24 24 H 1.48498 * 109.47011 * 210.00042 * 22 20 18 25 25 H 1.48502 * 109.47495 * 329.99664 * 22 20 18 26 26 H 1.09009 * 109.46905 * 269.96939 * 1 2 3 27 27 H 1.08999 * 109.47205 * 29.96317 * 1 2 3 28 28 H 1.08998 * 109.47635 * 149.96870 * 1 2 3 29 29 H 1.08005 * 126.58698 * 0.06863 * 3 2 1 30 30 H 1.08002 * 125.98574 * 180.02562 * 4 3 2 31 31 H 1.08997 * 109.46995 * 149.69665 * 7 6 5 32 32 H 1.08991 * 109.47446 * 29.68991 * 7 6 5 33 33 H 1.08992 * 109.47460 * 60.00230 * 8 7 6 34 34 H 1.08999 * 109.47047 * 299.99771 * 8 7 6 35 35 H 0.96997 * 119.99994 * 0.02562 * 11 9 8 36 36 H 1.08997 * 109.46993 * 60.00870 * 12 11 9 37 37 H 1.08999 * 109.47017 * 300.00291 * 12 11 9 38 38 H 1.09003 * 109.47083 * 65.00130 * 15 13 12 39 39 H 1.08995 * 109.47300 * 184.99893 * 15 13 12 40 40 H 0.96709 * 114.00043 * 179.97438 * 16 15 13 41 41 H 0.97001 * 120.00384 * 25.00562 * 17 13 12 42 42 H 0.97008 * 120.00329 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5460 0.6505 -0.0006 5 7 3.5095 -0.6902 0.0038 6 6 2.2662 -1.0870 -0.0007 7 6 1.8018 -2.5206 -0.0002 8 6 1.6433 -3.0058 -1.4426 9 6 1.1783 -4.4393 -1.4421 10 8 0.9924 -5.0162 -0.3916 11 7 0.9690 -5.0802 -2.6091 12 6 0.5174 -6.4739 -2.6086 13 6 0.3588 -6.9591 -4.0510 14 1 -0.4387 -6.3977 -4.5376 15 6 0.0084 -8.4484 -4.0525 16 8 0.9955 -9.1707 -3.3136 17 7 1.6145 -6.7521 -4.7767 18 6 1.6038 -6.6194 -6.1396 19 1 0.6692 -6.6629 -6.6790 20 6 2.7942 -6.4291 -6.8278 21 7 2.7839 -6.3010 -8.1376 22 14 4.4108 -6.3546 -5.8948 23 1 4.9819 -7.7210 -5.7841 24 1 5.3626 -5.4778 -6.6230 25 1 4.1731 -5.8059 -4.5355 26 1 -0.3633 -0.0005 1.0278 27 1 -0.3633 0.8903 -0.5133 28 1 -0.3634 -0.8897 -0.5143 29 1 1.9612 2.1346 0.0010 30 1 4.4368 1.2611 -0.0003 31 1 0.8436 -2.5919 0.5144 32 1 2.5369 -3.1405 0.5129 33 1 2.6014 -2.9346 -1.9573 34 1 0.9082 -2.3859 -1.9558 35 1 1.1180 -4.6190 -3.4493 36 1 -0.4406 -6.5452 -2.0936 37 1 1.2528 -7.0939 -2.0958 38 1 -0.9685 -8.5923 -3.5908 39 1 -0.0173 -8.8146 -5.0788 40 1 0.8366 -10.1238 -3.2723 41 1 2.4540 -6.7132 -4.2922 42 1 3.6157 -6.1676 -8.6186 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676560330.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:56 Heat of formation + Delta-G solvation = -43.759746 kcal Electronic energy + Delta-G solvation = -23681.577508 eV Core-core repulsion = 20082.934771 eV Total energy + Delta-G solvation = -3598.642737 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.03415 -40.77436 -38.72577 -36.46112 -35.23501 -35.01668 -34.62374 -33.37135 -30.83908 -29.83508 -27.90336 -26.96912 -25.43621 -24.79123 -22.30958 -21.69548 -21.25776 -20.62217 -19.84221 -18.30199 -18.27378 -17.63545 -17.24360 -16.86679 -16.57451 -16.41834 -15.81090 -15.47034 -15.07644 -15.03571 -14.68650 -14.59532 -14.41070 -14.30300 -13.94451 -13.84780 -13.66162 -13.34530 -13.18330 -12.98569 -12.82501 -12.62066 -12.33455 -12.19389 -11.87453 -11.78904 -11.11878 -10.95311 -10.88904 -10.73894 -10.55149 -10.01813 -9.33741 -9.31732 -8.01801 -5.33601 1.06918 1.37796 1.41696 1.45961 1.63413 1.90713 2.09638 2.34979 2.47919 3.30533 3.40649 3.49102 3.71243 3.77294 3.88925 3.95610 4.02559 4.13673 4.16782 4.40689 4.42551 4.47016 4.54411 4.61388 4.62788 4.68779 4.70189 4.84001 4.92705 4.98917 5.01621 5.19617 5.34980 5.49985 5.78440 5.84956 6.22146 6.25049 6.57344 7.03129 7.09193 7.16508 7.23662 7.83943 8.02262 9.19126 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.014808 B = 0.003684 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.373789 B = 7597.990815 C = 8720.743017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.456 5.456 3 C -0.045 4.045 4 C -0.063 4.063 5 N -0.534 5.534 6 C 0.191 3.809 7 C -0.008 4.008 8 C -0.125 4.125 9 C 0.514 3.486 10 O -0.580 6.580 11 N -0.718 5.718 12 C 0.126 3.874 13 C 0.165 3.835 14 H 0.083 0.917 15 C 0.064 3.936 16 O -0.584 6.584 17 N -0.741 5.741 18 C -0.221 4.221 19 H 0.070 0.930 20 C -0.051 4.051 21 N -0.979 5.979 22 Si 0.941 3.059 23 H -0.290 1.290 24 H -0.299 1.299 25 H -0.258 1.258 26 H 0.091 0.909 27 H 0.110 0.890 28 H 0.094 0.906 29 H 0.212 0.788 30 H 0.181 0.819 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.117 0.883 35 H 0.411 0.589 36 H 0.084 0.916 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.034 0.966 40 H 0.388 0.612 41 H 0.363 0.637 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.552 12.091 17.210 23.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.138 5.138 3 C -0.179 4.179 4 C -0.210 4.210 5 N -0.254 5.254 6 C -0.072 4.072 7 C -0.047 4.047 8 C -0.166 4.166 9 C 0.301 3.699 10 O -0.461 6.461 11 N -0.369 5.369 12 C 0.002 3.998 13 C 0.057 3.943 14 H 0.101 0.899 15 C -0.017 4.017 16 O -0.391 6.391 17 N -0.384 5.384 18 C -0.352 4.352 19 H 0.088 0.912 20 C -0.243 4.243 21 N -0.630 5.630 22 Si 0.771 3.229 23 H -0.217 1.217 24 H -0.226 1.226 25 H -0.183 1.183 26 H 0.109 0.891 27 H 0.129 0.871 28 H 0.113 0.887 29 H 0.228 0.772 30 H 0.198 0.802 31 H 0.117 0.883 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.135 0.865 35 H 0.247 0.753 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.052 0.948 40 H 0.236 0.764 41 H 0.195 0.805 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.035 11.794 17.813 23.196 hybrid contribution 0.664 -0.020 -0.589 0.887 sum -8.372 11.774 17.224 22.481 Atomic orbital electron populations 1.22419 0.74198 1.06387 1.05123 1.45564 1.09081 1.05925 1.53265 1.23269 0.90621 0.93868 1.10134 1.22728 0.98295 0.90660 1.09338 1.70187 1.20269 1.13814 1.21146 1.23226 0.85888 0.91517 1.06534 1.19563 1.02991 0.85926 0.96230 1.21555 1.04325 0.92029 0.98717 1.20881 0.76491 0.89331 0.83147 1.90667 1.53719 1.69531 1.32207 1.46073 1.67732 1.13912 1.09161 1.21427 1.00329 0.81433 0.96614 1.20840 0.89366 0.93510 0.90601 0.89932 1.22822 0.90839 0.93416 0.94589 1.86468 1.52342 1.24471 1.75835 1.42736 1.04506 1.87871 1.03312 1.19030 0.94017 1.39311 0.82792 0.91249 1.25238 1.00303 1.03005 0.95798 1.69835 1.26968 1.58803 1.07353 0.85629 0.81279 0.77212 0.78819 1.21715 1.22569 1.18313 0.89065 0.87112 0.88710 0.77172 0.80185 0.88291 0.90065 0.88796 0.86502 0.75309 0.89756 0.92610 0.91189 0.94770 0.76390 0.80454 0.93488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.49 10.79 127.77 1.38 1.87 16 2 N -0.46 -7.86 3.15 -537.60 -1.69 -9.56 16 3 C -0.05 -0.75 11.58 83.08 0.96 0.22 16 4 C -0.06 -1.42 11.87 83.52 0.99 -0.43 16 5 N -0.53 -15.51 11.25 -188.14 -2.12 -17.63 16 6 C 0.19 4.56 7.16 138.13 0.99 5.55 16 7 C -0.01 -0.17 4.60 29.85 0.14 -0.03 16 8 C -0.13 -2.84 5.68 29.85 0.17 -2.67 16 9 C 0.51 14.73 7.83 87.66 0.69 15.42 16 10 O -0.58 -20.03 15.98 -3.03 -0.05 -20.07 16 11 N -0.72 -21.04 5.39 -463.06 -2.49 -23.53 16 12 C 0.13 3.88 5.12 86.38 0.44 4.32 16 13 C 0.17 5.56 2.84 44.99 0.13 5.69 16 14 H 0.08 2.65 8.08 -2.39 -0.02 2.63 16 15 C 0.06 1.94 6.85 71.98 0.49 2.43 16 16 O -0.58 -18.10 12.64 -148.98 -1.88 -19.98 16 17 N -0.74 -32.07 4.31 -322.94 -1.39 -33.46 16 18 C -0.22 -11.63 10.41 84.03 0.87 -10.75 16 19 H 0.07 3.92 8.06 -2.91 -0.02 3.90 16 20 C -0.05 -2.92 5.50 84.86 0.47 -2.45 16 21 N -0.98 -60.70 13.97 21.65 0.30 -60.40 16 22 Si 0.94 45.93 27.74 68.60 1.90 47.84 16 23 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 24 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 25 H -0.26 -11.65 6.52 99.48 0.65 -11.01 16 26 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 27 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.09 0.70 7.66 -2.39 -0.02 0.68 16 29 H 0.21 1.64 8.06 -2.91 -0.02 1.62 16 30 H 0.18 3.25 8.06 -2.91 -0.02 3.22 16 31 H 0.10 1.91 7.66 -2.39 -0.02 1.89 16 32 H 0.08 2.19 8.10 -2.39 -0.02 2.17 16 33 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.41 11.99 8.14 -92.71 -0.75 11.23 16 36 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.06 1.97 7.39 -2.39 -0.02 1.96 16 38 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.39 8.19 9.12 -74.05 -0.68 7.52 16 41 H 0.36 16.31 5.66 -92.71 -0.52 15.78 16 42 H 0.26 15.35 8.31 -92.70 -0.77 14.58 16 Total: -1.00 -78.38 356.67 -0.67 -79.05 By element: Atomic # 1 Polarization: 39.54 SS G_CDS: -0.96 Total: 38.58 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 7.72 Total: 19.16 kcal Atomic # 7 Polarization: -137.18 SS G_CDS: -7.40 Total: -144.58 kcal Atomic # 8 Polarization: -38.12 SS G_CDS: -1.93 Total: -40.05 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.90 Total: 47.84 kcal Total: -78.38 -0.67 -79.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676560330.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.293 kcal (2) G-P(sol) polarization free energy of solvation -78.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds