Wall clock time and date at job start Tue Mar 31 2020 03:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47180 * 2 1 4 4 C 1.35030 * 124.88577 * 124.97775 * 3 2 1 5 5 C 1.35374 * 107.22882 * 179.72545 * 4 3 2 6 6 C 1.41508 * 105.49827 * 0.41381 * 5 4 3 7 7 C 1.47713 * 126.51217 * 179.84078 * 6 5 4 8 8 O 1.21566 * 119.99985 * 5.82320 * 7 6 5 9 9 N 1.34773 * 119.99857 * 185.81935 * 7 6 5 10 10 C 1.46507 * 120.00063 * 356.04398 * 9 7 6 11 11 C 1.46494 * 120.00238 * 176.04387 * 9 7 6 12 12 C 1.53005 * 109.47183 * 90.00118 * 11 9 7 13 13 H 1.09002 * 109.46935 * 304.99865 * 12 11 9 14 14 O 1.42901 * 109.47284 * 65.00031 * 12 11 9 15 15 C 1.52996 * 109.47401 * 185.00435 * 12 11 9 16 16 N 1.46496 * 109.47251 * 179.97438 * 15 12 11 17 17 C 1.36937 * 119.99829 * 179.97438 * 16 15 12 18 18 H 1.08003 * 120.00354 * 359.97438 * 17 16 15 19 19 C 1.38816 * 120.00088 * 179.97438 * 17 16 15 20 20 N 1.31613 * 120.00097 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99666 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46891 * 90.00307 * 21 19 17 23 23 H 1.48503 * 109.47003 * 210.00019 * 21 19 17 24 24 H 1.48499 * 109.47078 * 329.99950 * 21 19 17 25 25 N 1.28476 * 124.88182 * 304.97803 * 3 2 1 26 26 H 1.08994 * 109.47313 * 59.99845 * 1 2 3 27 27 H 1.08999 * 109.47137 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46726 * 299.99463 * 1 2 3 29 29 H 1.09006 * 109.46823 * 239.99989 * 2 1 3 30 30 H 1.08994 * 109.47313 * 120.00155 * 2 1 3 31 31 H 1.07995 * 126.38769 * 0.02562 * 4 3 2 32 32 H 1.07995 * 127.24712 * 180.26183 * 5 4 3 33 33 H 1.09002 * 109.46742 * 275.66064 * 10 9 7 34 34 H 1.08998 * 109.47032 * 35.65942 * 10 9 7 35 35 H 1.08994 * 109.47287 * 155.65850 * 10 9 7 36 36 H 1.09000 * 109.47588 * 209.99997 * 11 9 7 37 37 H 1.08998 * 109.47470 * 329.99959 * 11 9 7 38 38 H 0.96700 * 113.99688 * 59.99552 * 14 12 11 39 39 H 1.09008 * 109.47086 * 300.00144 * 15 12 11 40 40 H 1.09000 * 109.47265 * 59.99126 * 15 12 11 41 41 H 0.96990 * 120.00134 * 359.97438 * 16 15 12 42 42 H 0.97007 * 119.99925 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8744 1.8977 0.9076 5 6 3.0873 3.1906 0.5676 6 6 2.3005 3.4123 -0.5875 7 6 2.1861 4.6760 -1.3437 8 8 2.8856 5.6258 -1.0497 9 7 1.3062 4.7760 -2.3597 10 6 0.5254 3.6063 -2.7704 11 6 1.1304 6.0543 -3.0534 12 6 2.1063 6.1350 -4.2290 13 1 3.1224 5.9716 -3.8696 14 8 1.7751 5.1332 -5.1927 15 6 2.0109 7.5176 -4.8771 16 7 2.9457 7.5951 -6.0024 17 6 3.0362 8.7457 -6.7393 18 1 2.4181 9.5959 -6.4913 19 6 3.9224 8.8193 -7.8053 20 7 4.0090 9.9250 -8.5139 21 14 4.9920 7.3490 -8.2338 22 1 4.2788 6.4854 -9.2088 23 1 6.2669 7.8216 -8.8311 24 1 5.2809 6.5712 -7.0022 25 7 1.6937 2.2753 -0.8636 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.3120 1.3752 1.7454 32 1 3.7218 3.9034 1.0731 33 1 1.1123 3.0026 -3.4626 34 1 0.2736 3.0111 -1.8926 35 1 -0.3905 3.9350 -3.2614 36 1 0.1081 6.1290 -3.4241 37 1 1.3267 6.8732 -2.3614 38 1 0.8829 5.2169 -5.5562 39 1 0.9948 7.6811 -5.2365 40 1 2.2635 8.2817 -4.1420 41 1 3.5006 6.8314 -6.2253 42 1 4.6286 9.9765 -9.2586 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677121158.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:23 Heat of formation + Delta-G solvation = 25.192344 kcal Electronic energy + Delta-G solvation = -23944.493981 eV Core-core repulsion = 20348.841231 eV Total energy + Delta-G solvation = -3595.652750 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.91640 -39.68873 -37.46614 -35.22688 -34.93103 -34.07021 -31.53846 -31.08181 -30.50687 -29.47565 -26.79140 -26.17561 -24.43584 -22.75480 -21.84032 -21.42208 -21.18913 -19.43461 -17.68596 -17.63145 -16.96185 -16.53489 -16.21956 -15.81192 -15.22692 -14.90386 -14.77935 -14.38111 -14.08070 -13.84883 -13.58513 -13.28821 -13.13215 -12.88575 -12.80166 -12.72941 -12.57602 -12.33590 -12.11599 -11.92601 -11.53754 -11.15416 -10.79712 -10.75971 -10.72807 -10.19347 -10.07959 -9.76552 -9.51123 -9.48744 -9.29708 -8.84003 -8.44451 -7.15598 -5.70059 -3.04808 1.41992 1.92727 2.11006 2.99172 3.36387 3.47489 3.53478 3.54553 3.92638 4.33457 4.39532 4.47325 4.60352 4.67905 4.70216 4.82783 4.99944 5.05944 5.14256 5.21105 5.27560 5.43632 5.50427 5.54450 5.58983 5.62574 5.66590 5.79570 5.89317 5.94934 5.97820 6.18318 6.45302 6.55032 6.58789 6.73300 7.32562 7.65644 7.97117 8.08089 8.18740 8.49143 9.29539 10.02105 10.22919 11.48237 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.026621 B = 0.003009 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.567286 B = 9302.917561 C = 9353.779896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.116 3.884 3 N -0.287 5.287 4 C -0.020 4.020 5 C -0.179 4.179 6 C -0.010 4.010 7 C 0.597 3.403 8 O -0.531 6.531 9 N -0.595 5.595 10 C 0.080 3.920 11 C 0.089 3.911 12 C 0.082 3.918 13 H 0.101 0.899 14 O -0.554 6.554 15 C 0.131 3.869 16 N -0.750 5.750 17 C -0.244 4.244 18 H 0.089 0.911 19 C 0.004 3.996 20 N -0.935 5.935 21 Si 0.886 3.114 22 H -0.284 1.284 23 H -0.292 1.292 24 H -0.276 1.276 25 N -0.255 5.255 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.062 0.938 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.180 0.820 32 H 0.162 0.838 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.369 0.631 39 H 0.029 0.971 40 H 0.036 0.964 41 H 0.366 0.634 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.842 -24.138 21.772 33.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.004 4.004 3 N -0.076 5.076 4 C -0.163 4.163 5 C -0.207 4.207 6 C -0.170 4.170 7 C 0.384 3.616 8 O -0.405 6.405 9 N -0.327 5.327 10 C -0.063 4.063 11 C -0.035 4.035 12 C 0.021 3.979 13 H 0.119 0.881 14 O -0.359 6.359 15 C 0.002 3.998 16 N -0.396 5.396 17 C -0.373 4.373 18 H 0.107 0.893 19 C -0.192 4.192 20 N -0.584 5.584 21 Si 0.717 3.283 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.202 1.202 25 N -0.091 5.091 26 H 0.093 0.907 27 H 0.098 0.902 28 H 0.081 0.919 29 H 0.112 0.888 30 H 0.120 0.880 31 H 0.197 0.803 32 H 0.179 0.821 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.113 0.887 38 H 0.215 0.785 39 H 0.046 0.954 40 H 0.054 0.946 41 H 0.200 0.800 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.687 -24.222 21.232 33.636 hybrid contribution 0.834 -0.508 0.039 0.977 sum -8.853 -24.730 21.271 33.800 Atomic orbital electron populations 1.22080 0.93082 1.03444 1.03932 1.21998 0.96697 0.76889 1.04779 1.45794 1.32487 1.10414 1.18905 1.22866 0.99278 0.95485 0.98632 1.21792 1.04268 0.96204 0.98446 1.21949 1.02421 0.93120 0.99511 1.16998 0.80001 0.85300 0.79342 1.90819 1.43396 1.38125 1.68186 1.47541 1.40573 1.11954 1.32616 1.22112 0.94936 0.87533 1.01728 1.22265 0.99978 0.85765 0.95459 1.22614 0.99235 0.88812 0.87203 0.88132 1.86590 1.36994 1.52760 1.59513 1.21198 0.94163 0.93682 0.90716 1.42582 1.46912 1.15245 1.34832 1.19063 1.19012 0.91691 1.07583 0.89286 1.24657 0.99556 0.96911 0.98045 1.69710 1.40451 1.26087 1.22108 0.86501 0.80506 0.83077 0.78235 1.21067 1.21832 1.20216 1.73662 1.21938 0.98118 1.15384 0.90699 0.90219 0.91857 0.88818 0.87962 0.80256 0.82050 0.92177 0.89117 0.91771 0.89826 0.88658 0.78501 0.95362 0.94590 0.80044 0.93112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.60 10.02 37.16 0.37 -0.23 16 2 C 0.12 0.45 7.12 -4.04 -0.03 0.42 16 3 N -0.29 -2.33 3.41 -61.33 -0.21 -2.54 16 4 C -0.02 -0.16 11.40 -17.17 -0.20 -0.35 16 5 C -0.18 -1.98 10.81 -39.36 -0.43 -2.40 16 6 C -0.01 -0.14 6.83 -82.76 -0.57 -0.70 16 7 C 0.60 9.34 7.67 -12.39 -0.10 9.24 16 8 O -0.53 -9.95 16.55 5.31 0.09 -9.87 16 9 N -0.60 -8.13 2.84 -182.74 -0.52 -8.65 16 10 C 0.08 0.86 9.31 59.85 0.56 1.42 16 11 C 0.09 1.22 5.07 -4.04 -0.02 1.20 16 12 C 0.08 1.40 3.30 -26.73 -0.09 1.31 16 13 H 0.10 2.00 8.14 -51.93 -0.42 1.58 16 14 O -0.55 -9.19 12.64 -35.23 -0.45 -9.64 16 15 C 0.13 2.64 5.92 -4.05 -0.02 2.61 16 16 N -0.75 -19.12 5.30 -59.91 -0.32 -19.44 16 17 C -0.24 -7.25 10.47 -15.06 -0.16 -7.41 16 18 H 0.09 2.79 8.06 -52.48 -0.42 2.37 16 19 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 20 N -0.94 -30.42 13.97 55.49 0.78 -29.65 16 21 Si 0.89 23.61 27.73 -169.99 -4.71 18.89 16 22 H -0.28 -7.47 7.11 56.52 0.40 -7.07 16 23 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 24 H -0.28 -7.16 6.52 56.52 0.37 -6.79 16 25 N -0.25 -2.81 8.17 33.42 0.27 -2.53 16 26 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 27 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.10 0.11 8.04 -51.93 -0.42 -0.30 16 31 H 0.18 0.66 8.06 -52.49 -0.42 0.24 16 32 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.09 0.93 5.29 -51.93 -0.27 0.66 16 35 H 0.06 0.56 7.83 -51.93 -0.41 0.15 16 36 H 0.08 0.91 7.86 -51.93 -0.41 0.50 16 37 H 0.10 1.38 7.48 -51.93 -0.39 0.99 16 38 H 0.37 4.77 9.05 45.56 0.41 5.18 16 39 H 0.03 0.54 8.14 -51.92 -0.42 0.12 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.37 9.45 5.41 -40.82 -0.22 9.23 16 42 H 0.26 8.00 8.31 -40.82 -0.34 7.66 16 LS Contribution 353.28 15.07 5.32 5.32 Total: -1.00 -38.50 353.28 -6.03 -44.53 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -5.52 Total: 8.43 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -0.77 Total: 5.13 kcal Atomic # 7 Polarization: -62.81 SS G_CDS: 0.00 Total: -62.81 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.36 Total: -19.50 kcal Atomic # 14 Polarization: 23.61 SS G_CDS: -4.71 Total: 18.89 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -38.50 -6.03 -44.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677121158.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.724 kcal (2) G-P(sol) polarization free energy of solvation -38.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds