Wall clock time and date at job start Tue Mar 31 2020 03:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47180 * 2 1 4 4 C 1.35030 * 124.88577 * 124.97775 * 3 2 1 5 5 C 1.35374 * 107.22882 * 179.72545 * 4 3 2 6 6 C 1.41508 * 105.49827 * 0.41381 * 5 4 3 7 7 C 1.47713 * 126.51217 * 179.84078 * 6 5 4 8 8 O 1.21566 * 119.99985 * 5.82320 * 7 6 5 9 9 N 1.34773 * 119.99857 * 185.81935 * 7 6 5 10 10 C 1.46507 * 120.00063 * 356.04398 * 9 7 6 11 11 C 1.46494 * 120.00238 * 176.04387 * 9 7 6 12 12 C 1.53005 * 109.47183 * 90.00118 * 11 9 7 13 13 H 1.09002 * 109.46935 * 304.99865 * 12 11 9 14 14 O 1.42901 * 109.47284 * 65.00031 * 12 11 9 15 15 C 1.52996 * 109.47401 * 185.00435 * 12 11 9 16 16 N 1.46496 * 109.47251 * 179.97438 * 15 12 11 17 17 C 1.36937 * 119.99829 * 179.97438 * 16 15 12 18 18 H 1.08003 * 120.00354 * 359.97438 * 17 16 15 19 19 C 1.38816 * 120.00088 * 179.97438 * 17 16 15 20 20 N 1.31613 * 120.00097 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99666 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46891 * 90.00307 * 21 19 17 23 23 H 1.48503 * 109.47003 * 210.00019 * 21 19 17 24 24 H 1.48499 * 109.47078 * 329.99950 * 21 19 17 25 25 N 1.28476 * 124.88182 * 304.97803 * 3 2 1 26 26 H 1.08994 * 109.47313 * 59.99845 * 1 2 3 27 27 H 1.08999 * 109.47137 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46726 * 299.99463 * 1 2 3 29 29 H 1.09006 * 109.46823 * 239.99989 * 2 1 3 30 30 H 1.08994 * 109.47313 * 120.00155 * 2 1 3 31 31 H 1.07995 * 126.38769 * 0.02562 * 4 3 2 32 32 H 1.07995 * 127.24712 * 180.26183 * 5 4 3 33 33 H 1.09002 * 109.46742 * 275.66064 * 10 9 7 34 34 H 1.08998 * 109.47032 * 35.65942 * 10 9 7 35 35 H 1.08994 * 109.47287 * 155.65850 * 10 9 7 36 36 H 1.09000 * 109.47588 * 209.99997 * 11 9 7 37 37 H 1.08998 * 109.47470 * 329.99959 * 11 9 7 38 38 H 0.96700 * 113.99688 * 59.99552 * 14 12 11 39 39 H 1.09008 * 109.47086 * 300.00144 * 15 12 11 40 40 H 1.09000 * 109.47265 * 59.99126 * 15 12 11 41 41 H 0.96990 * 120.00134 * 359.97438 * 16 15 12 42 42 H 0.97007 * 119.99925 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8744 1.8977 0.9076 5 6 3.0873 3.1906 0.5676 6 6 2.3005 3.4123 -0.5875 7 6 2.1861 4.6760 -1.3437 8 8 2.8856 5.6258 -1.0497 9 7 1.3062 4.7760 -2.3597 10 6 0.5254 3.6063 -2.7704 11 6 1.1304 6.0543 -3.0534 12 6 2.1063 6.1350 -4.2290 13 1 3.1224 5.9716 -3.8696 14 8 1.7751 5.1332 -5.1927 15 6 2.0109 7.5176 -4.8771 16 7 2.9457 7.5951 -6.0024 17 6 3.0362 8.7457 -6.7393 18 1 2.4181 9.5959 -6.4913 19 6 3.9224 8.8193 -7.8053 20 7 4.0090 9.9250 -8.5139 21 14 4.9920 7.3490 -8.2338 22 1 4.2788 6.4854 -9.2088 23 1 6.2669 7.8216 -8.8311 24 1 5.2809 6.5712 -7.0022 25 7 1.6937 2.2753 -0.8636 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.3120 1.3752 1.7454 32 1 3.7218 3.9034 1.0731 33 1 1.1123 3.0026 -3.4626 34 1 0.2736 3.0111 -1.8926 35 1 -0.3905 3.9350 -3.2614 36 1 0.1081 6.1290 -3.4241 37 1 1.3267 6.8732 -2.3614 38 1 0.8829 5.2169 -5.5562 39 1 0.9948 7.6811 -5.2365 40 1 2.2635 8.2817 -4.1420 41 1 3.5006 6.8314 -6.2253 42 1 4.6286 9.9765 -9.2586 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677121158.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:23 Heat of formation + Delta-G solvation = -5.565257 kcal Electronic energy + Delta-G solvation = -23945.827730 eV Core-core repulsion = 20348.841231 eV Total energy + Delta-G solvation = -3596.986500 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.63507 -40.83530 -38.86742 -36.53716 -35.90893 -35.41936 -33.52235 -32.05527 -31.35763 -30.59212 -28.00480 -27.39232 -25.40966 -24.16739 -22.99135 -22.65068 -22.09591 -20.38001 -19.83010 -18.43906 -17.91178 -17.69739 -17.15130 -16.79712 -16.61272 -16.45656 -16.05156 -15.44701 -15.26902 -15.02576 -14.77521 -14.55587 -14.35624 -14.02414 -13.90999 -13.77004 -13.43276 -13.31793 -13.23426 -12.92552 -12.85548 -12.60314 -12.31339 -12.22569 -11.98666 -11.87614 -11.59773 -11.36256 -11.08031 -11.04849 -10.21283 -10.06307 -9.57277 -9.34061 -8.06448 -5.39241 0.52043 1.20432 1.35873 1.37338 1.45741 1.53688 2.01532 2.31571 2.45095 3.24221 3.27387 3.35579 3.61356 3.78206 3.96768 3.98181 4.06985 4.08545 4.21908 4.24857 4.39898 4.43232 4.53173 4.67590 4.71667 4.76149 4.82050 4.86146 4.89649 4.91447 5.05120 5.15535 5.27258 5.35003 5.54304 5.70895 5.94530 6.17775 6.27715 6.83996 6.85830 7.04290 7.11523 7.80652 7.99323 9.14914 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.026621 B = 0.003009 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.567286 B = 9302.917561 C = 9353.779896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.106 3.894 3 N -0.280 5.280 4 C 0.004 3.996 5 C -0.210 4.210 6 C -0.047 4.047 7 C 0.587 3.413 8 O -0.578 6.578 9 N -0.593 5.593 10 C 0.083 3.917 11 C 0.095 3.905 12 C 0.101 3.899 13 H 0.067 0.933 14 O -0.563 6.563 15 C 0.127 3.873 16 N -0.756 5.756 17 C -0.235 4.235 18 H 0.062 0.938 19 C -0.061 4.061 20 N -0.981 5.981 21 Si 0.956 3.044 22 H -0.274 1.274 23 H -0.292 1.292 24 H -0.267 1.267 25 N -0.259 5.259 26 H 0.055 0.945 27 H 0.103 0.897 28 H 0.056 0.944 29 H 0.101 0.899 30 H 0.140 0.860 31 H 0.227 0.773 32 H 0.156 0.844 33 H 0.050 0.950 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.122 0.878 37 H 0.084 0.916 38 H 0.387 0.613 39 H 0.049 0.951 40 H 0.030 0.970 41 H 0.365 0.635 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.812 -27.877 22.999 37.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.012 4.012 3 N -0.069 5.069 4 C -0.139 4.139 5 C -0.238 4.238 6 C -0.204 4.204 7 C 0.375 3.625 8 O -0.456 6.456 9 N -0.323 5.323 10 C -0.059 4.059 11 C -0.028 4.028 12 C 0.040 3.960 13 H 0.085 0.915 14 O -0.370 6.370 15 C 0.000 4.000 16 N -0.401 5.401 17 C -0.366 4.366 18 H 0.080 0.920 19 C -0.253 4.253 20 N -0.631 5.631 21 Si 0.784 3.216 22 H -0.200 1.200 23 H -0.218 1.218 24 H -0.193 1.193 25 N -0.097 5.097 26 H 0.074 0.926 27 H 0.121 0.879 28 H 0.075 0.925 29 H 0.120 0.880 30 H 0.158 0.842 31 H 0.243 0.757 32 H 0.174 0.826 33 H 0.068 0.932 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.140 0.860 37 H 0.102 0.898 38 H 0.236 0.764 39 H 0.067 0.933 40 H 0.048 0.952 41 H 0.199 0.801 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.724 -28.013 22.471 37.479 hybrid contribution 1.034 0.573 -0.261 1.211 sum -9.690 -27.439 22.210 36.607 Atomic orbital electron populations 1.22064 0.92896 1.04599 1.02675 1.22480 0.96898 0.74722 1.07078 1.46311 1.31477 1.11264 1.17829 1.23445 0.97570 0.94227 0.98695 1.21984 1.05156 0.98052 0.98658 1.21764 1.04801 0.93073 1.00802 1.17500 0.79538 0.85803 0.79659 1.90771 1.45277 1.39920 1.69672 1.47650 1.40210 1.12593 1.31895 1.22221 0.95264 0.86529 1.01931 1.22171 1.00899 0.85892 0.93873 1.22235 0.98674 0.86928 0.88154 0.91461 1.86555 1.38706 1.52158 1.59553 1.21414 0.93807 0.95657 0.89131 1.42629 1.47997 1.13798 1.35717 1.19079 1.17812 0.92181 1.07552 0.92030 1.25447 1.01491 0.99890 0.98422 1.69868 1.41775 1.28421 1.23049 0.85398 0.78446 0.79567 0.78238 1.20000 1.21825 1.19258 1.73576 1.21930 0.97930 1.16259 0.92552 0.87867 0.92483 0.88035 0.84200 0.75701 0.82585 0.93163 0.88577 0.89070 0.85981 0.89782 0.76356 0.93264 0.95232 0.80148 0.93198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.72 10.02 71.98 0.72 0.01 16 2 C 0.11 0.44 7.12 86.38 0.61 1.05 16 3 N -0.28 -3.81 3.41 -347.95 -1.19 -5.00 16 4 C 0.00 0.05 11.40 83.54 0.95 1.00 16 5 C -0.21 -4.57 10.81 22.41 0.24 -4.33 16 6 C -0.05 -1.24 6.83 42.46 0.29 -0.95 16 7 C 0.59 18.88 7.67 86.75 0.67 19.55 16 8 O -0.58 -22.90 16.55 -3.92 -0.06 -22.97 16 9 N -0.59 -15.90 2.84 -850.35 -2.41 -18.31 16 10 C 0.08 1.64 9.31 127.77 1.19 2.83 16 11 C 0.10 2.52 5.07 86.38 0.44 2.96 16 12 C 0.10 3.39 3.30 30.59 0.10 3.49 16 13 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 14 O -0.56 -17.65 12.64 -148.98 -1.88 -19.53 16 15 C 0.13 5.06 5.92 86.38 0.51 5.57 16 16 N -0.76 -38.36 5.30 -343.45 -1.82 -40.18 16 17 C -0.24 -14.17 10.47 84.03 0.88 -13.29 16 18 H 0.06 3.98 8.06 -2.91 -0.02 3.95 16 19 C -0.06 -3.77 5.50 84.86 0.47 -3.30 16 20 N -0.98 -64.95 13.97 21.65 0.30 -64.65 16 21 Si 0.96 49.08 27.73 68.60 1.90 50.98 16 22 H -0.27 -13.56 7.11 99.48 0.71 -12.85 16 23 H -0.29 -14.88 7.11 99.48 0.71 -14.17 16 24 H -0.27 -13.17 6.52 99.48 0.65 -12.52 16 25 N -0.26 -5.39 8.17 -48.17 -0.39 -5.78 16 26 H 0.06 0.47 8.08 -2.39 -0.02 0.45 16 27 H 0.10 -0.02 8.14 -2.39 -0.02 -0.04 16 28 H 0.06 0.34 8.14 -2.38 -0.02 0.32 16 29 H 0.10 0.34 8.14 -2.38 -0.02 0.32 16 30 H 0.14 -0.42 8.04 -2.39 -0.02 -0.44 16 31 H 0.23 0.59 8.06 -2.91 -0.02 0.57 16 32 H 0.16 3.38 8.06 -2.91 -0.02 3.35 16 33 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.10 1.85 5.29 -2.39 -0.01 1.83 16 35 H 0.09 1.30 7.83 -2.39 -0.02 1.28 16 36 H 0.12 2.28 7.86 -2.39 -0.02 2.26 16 37 H 0.08 2.45 7.48 -2.39 -0.02 2.44 16 38 H 0.39 8.89 9.05 -74.06 -0.67 8.22 16 39 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 40 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.37 18.55 5.41 -92.72 -0.50 18.05 16 42 H 0.26 16.29 8.31 -92.70 -0.77 15.52 16 Total: -1.00 -86.85 353.28 1.33 -85.52 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: -0.19 Total: 25.34 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 7.07 Total: 14.58 kcal Atomic # 7 Polarization: -128.41 SS G_CDS: -5.51 Total: -133.92 kcal Atomic # 8 Polarization: -40.55 SS G_CDS: -1.95 Total: -42.50 kcal Atomic # 14 Polarization: 49.08 SS G_CDS: 1.90 Total: 50.98 kcal Total: -86.85 1.33 -85.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677121158.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.955 kcal (2) G-P(sol) polarization free energy of solvation -86.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds