Wall clock time and date at job start Tue Mar 31 2020 03:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46498 * 119.99856 * 2 1 4 4 C 1.53000 * 109.47080 * 269.99696 * 3 2 1 5 5 O 1.42899 * 109.47224 * 64.99927 * 4 3 2 6 6 C 1.42903 * 114.00099 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.46790 * 180.02562 * 6 5 4 8 8 N 1.46499 * 109.47279 * 65.00129 * 7 6 5 9 9 C 1.36938 * 120.00001 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99939 * 359.97438 * 9 8 7 11 11 C 1.38813 * 119.99693 * 180.02562 * 9 8 7 12 12 N 1.31617 * 120.00077 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99593 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47083 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.46895 * 119.99831 * 13 11 9 16 16 H 1.48500 * 109.46953 * 239.99440 * 13 11 9 17 17 C 1.34776 * 120.00351 * 179.97438 * 2 1 3 18 18 O 1.21566 * 120.00178 * 174.50001 * 17 2 1 19 19 C 1.47717 * 119.99827 * 354.21884 * 17 2 1 20 20 C 1.41494 * 126.51873 * 174.29300 * 19 17 2 21 21 C 1.35368 * 105.50595 * 179.84639 * 20 19 17 22 22 N 1.35037 * 107.22289 * 0.41440 * 21 20 19 23 23 C 1.46504 * 124.88361 * 179.70280 * 22 21 20 24 24 N 1.28466 * 110.23217 * 359.72882 * 22 21 20 25 25 H 1.08992 * 109.47342 * 265.23680 * 1 2 3 26 26 H 1.08999 * 109.47090 * 25.24600 * 1 2 3 27 27 H 1.09005 * 109.47090 * 145.23560 * 1 2 3 28 28 H 1.08997 * 109.47204 * 29.99521 * 3 2 1 29 29 H 1.09002 * 109.47439 * 149.99850 * 3 2 1 30 30 H 1.08999 * 109.47678 * 185.00004 * 4 3 2 31 31 H 1.09007 * 109.47278 * 304.99975 * 4 3 2 32 32 H 1.08997 * 109.47207 * 299.99722 * 6 5 4 33 33 H 1.08998 * 109.46918 * 60.00160 * 6 5 4 34 34 H 1.09000 * 109.46761 * 185.00397 * 7 6 5 35 35 H 1.08996 * 109.47035 * 304.99612 * 7 6 5 36 36 H 0.97004 * 119.99612 * 0.02562 * 8 7 6 37 37 H 0.97002 * 119.99825 * 180.02562 * 12 11 9 38 38 H 1.08000 * 127.24913 * 359.97438 * 20 19 17 39 39 H 1.07994 * 126.39026 * 180.14626 * 21 20 19 40 40 H 1.09004 * 109.47090 * 270.00482 * 23 22 21 41 41 H 1.09003 * 109.46864 * 29.99802 * 23 22 21 42 42 H 1.08992 * 109.46813 * 150.00038 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 8 1.2060 1.9934 -2.0815 6 6 1.3325 2.4174 -3.4403 7 6 -0.0565 2.6915 -4.0203 8 7 -0.6651 3.8230 -3.3164 9 6 -1.9171 4.2537 -3.6660 10 1 -2.4557 3.7595 -4.4611 11 6 -2.4935 5.3261 -2.9993 12 7 -1.8369 5.9287 -2.0308 13 14 -4.2017 5.9132 -3.4759 14 1 -4.7218 5.0741 -4.5852 15 1 -5.1076 5.8030 -2.3044 16 1 -4.1331 7.3294 -3.9172 17 6 2.1389 -1.1672 0.0005 18 8 3.3504 -1.1696 -0.1004 19 6 1.4060 -2.4431 0.1300 20 6 1.9558 -3.7434 0.0345 21 6 0.9164 -4.5904 0.2209 22 7 -0.1871 -3.8344 0.4064 23 6 -1.5345 -4.3612 0.6374 24 7 0.1145 -2.5869 0.3505 25 1 -0.3633 -0.0853 1.0240 26 1 -0.3633 0.9295 -0.4383 27 1 -0.3633 -0.8443 -0.5860 28 1 1.6083 2.0284 0.5137 29 1 3.1498 1.1385 0.5139 30 1 3.0732 2.6064 -1.4439 31 1 2.9643 0.9130 -1.9816 32 1 1.9297 3.3282 -3.4827 33 1 1.8212 1.6350 -4.0210 34 1 0.0328 2.9286 -5.0805 35 1 -0.6825 1.8078 -3.8973 36 1 -0.1809 4.2676 -2.6030 37 1 -2.2398 6.6779 -1.5647 38 1 2.9878 -4.0051 -0.1467 39 1 0.9606 -5.6694 0.2172 40 1 -2.0411 -4.4952 -0.3185 41 1 -1.4664 -5.3208 1.1500 42 1 -2.0982 -3.6598 1.2523 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677519870.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:26 Heat of formation + Delta-G solvation = 3.337978 kcal Electronic energy + Delta-G solvation = -23845.988880 eV Core-core repulsion = 20249.388454 eV Total energy + Delta-G solvation = -3596.600426 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.58918 -40.73397 -39.00670 -36.83227 -36.14141 -34.39230 -33.41163 -31.93007 -31.12038 -29.35679 -28.34395 -27.33515 -25.53048 -24.76273 -22.87171 -22.73976 -22.32369 -20.29635 -19.23951 -18.41943 -17.95302 -17.49823 -17.26308 -17.20182 -16.82770 -16.39617 -16.11499 -15.52139 -15.20572 -14.83357 -14.69800 -14.53935 -14.27054 -14.04505 -13.83140 -13.57510 -13.41584 -13.32703 -13.21068 -13.00482 -12.77525 -12.74677 -12.53253 -12.10300 -11.92271 -11.71635 -11.65263 -11.22521 -10.96934 -10.51075 -10.20593 -10.06124 -9.67363 -8.97512 -7.91804 -5.20737 0.52757 1.22068 1.48389 1.49742 1.59907 1.61148 2.04640 2.32336 2.57974 2.77824 3.32343 3.41852 3.83360 3.95660 4.02916 4.05231 4.16205 4.28428 4.38761 4.43102 4.45316 4.45711 4.50366 4.55569 4.64320 4.70670 4.72854 4.77457 4.79619 4.83678 4.98571 5.04918 5.12679 5.33198 5.50232 5.50993 5.93794 6.24167 6.29452 6.37128 6.84051 7.10969 7.36110 8.11393 8.36773 9.32005 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.016649 B = 0.003333 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.416040 B = 8397.682519 C = 9411.204288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.594 5.594 3 C 0.120 3.880 4 C 0.047 3.953 5 O -0.393 6.393 6 C 0.066 3.934 7 C 0.153 3.847 8 N -0.740 5.740 9 C -0.246 4.246 10 H 0.075 0.925 11 C -0.076 4.076 12 N -0.968 5.968 13 Si 0.975 3.025 14 H -0.266 1.266 15 H -0.292 1.292 16 H -0.293 1.293 17 C 0.594 3.406 18 O -0.572 6.572 19 C -0.050 4.050 20 C -0.206 4.206 21 C 0.003 3.997 22 N -0.284 5.284 23 C 0.075 3.925 24 N -0.273 5.273 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.044 0.956 35 H 0.020 0.980 36 H 0.376 0.624 37 H 0.251 0.749 38 H 0.163 0.837 39 H 0.229 0.771 40 H 0.098 0.902 41 H 0.132 0.868 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.790 -24.537 6.349 25.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.325 5.325 3 C -0.003 4.003 4 C -0.030 4.030 5 O -0.312 6.312 6 C -0.011 4.011 7 C 0.026 3.974 8 N -0.383 5.383 9 C -0.377 4.377 10 H 0.093 0.907 11 C -0.268 4.268 12 N -0.619 5.619 13 Si 0.804 3.196 14 H -0.190 1.190 15 H -0.220 1.220 16 H -0.220 1.220 17 C 0.382 3.618 18 O -0.451 6.451 19 C -0.207 4.207 20 C -0.234 4.234 21 C -0.140 4.140 22 N -0.073 5.073 23 C -0.063 4.063 24 N -0.111 5.111 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.112 0.888 29 H 0.123 0.877 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.038 0.962 36 H 0.208 0.792 37 H 0.059 0.941 38 H 0.181 0.819 39 H 0.245 0.755 40 H 0.116 0.884 41 H 0.150 0.850 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.957 -24.007 6.464 25.175 hybrid contribution 0.280 0.495 -0.218 0.609 sum 4.237 -23.513 6.246 24.694 Atomic orbital electron populations 1.21829 0.77432 1.02982 1.01921 1.47707 1.08330 1.05286 1.71201 1.21653 0.98651 0.84524 0.95439 1.22943 0.86530 0.99588 0.93969 1.87975 1.29739 1.87619 1.25906 1.22650 0.97111 0.98491 0.82801 1.20837 0.91872 0.89872 0.94818 1.42487 1.17358 1.36073 1.42383 1.19691 0.93617 1.10518 1.13920 0.90690 1.25583 1.02621 0.99489 0.99112 1.69846 1.39416 1.25541 1.27102 0.85050 0.79609 0.77584 0.77359 1.19030 1.21959 1.21982 1.17363 0.85910 0.82628 0.75880 1.90716 1.14259 1.87301 1.52830 1.21834 0.91154 0.95178 1.12569 1.22003 1.01752 0.90179 1.09446 1.23488 0.84788 1.00752 1.05021 1.46074 1.10870 1.02556 1.47790 1.22617 0.76670 1.01952 1.05074 1.73756 1.15612 1.02118 1.19587 0.92019 0.91688 0.90423 0.88812 0.87700 0.91052 0.93712 0.93176 0.91261 0.93873 0.96217 0.79231 0.94055 0.81913 0.75471 0.88402 0.85001 0.88567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.03 9.10 127.77 1.16 4.20 16 2 N -0.59 -18.42 2.84 -850.37 -2.41 -20.83 16 3 C 0.12 3.47 5.75 86.38 0.50 3.97 16 4 C 0.05 1.44 6.28 71.98 0.45 1.90 16 5 O -0.39 -14.61 9.20 -148.98 -1.37 -15.98 16 6 C 0.07 2.34 6.07 71.98 0.44 2.77 16 7 C 0.15 6.48 6.65 86.38 0.57 7.05 16 8 N -0.74 -39.57 5.55 -343.45 -1.91 -41.47 16 9 C -0.25 -14.18 9.99 84.03 0.84 -13.34 16 10 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 11 C -0.08 -4.46 5.50 84.86 0.47 -4.00 16 12 N -0.97 -60.60 13.06 21.65 0.28 -60.32 16 13 Si 0.98 46.87 29.55 68.60 2.03 48.90 16 14 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 15 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 16 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 17 C 0.59 19.35 7.66 86.75 0.66 20.01 16 18 O -0.57 -20.95 16.57 -3.92 -0.06 -21.01 16 19 C -0.05 -1.39 6.76 42.46 0.29 -1.10 16 20 C -0.21 -4.48 10.81 22.41 0.24 -4.24 16 21 C 0.00 0.03 11.46 83.54 0.96 0.99 16 22 N -0.28 -4.61 3.70 -369.44 -1.37 -5.97 16 23 C 0.08 0.44 11.31 127.77 1.44 1.89 16 24 N -0.27 -6.70 8.74 -48.18 -0.42 -7.12 16 25 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.06 2.24 7.21 -2.39 -0.02 2.22 16 27 H 0.08 2.34 5.92 -2.38 -0.01 2.33 16 28 H 0.09 2.66 8.07 -2.39 -0.02 2.64 16 29 H 0.10 2.81 7.50 -2.39 -0.02 2.79 16 30 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.07 2.06 8.14 -2.39 -0.02 2.05 16 34 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.38 21.49 7.67 -92.71 -0.71 20.78 16 37 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 38 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 39 H 0.23 0.72 8.06 -2.91 -0.02 0.70 16 40 H 0.10 0.40 8.14 -2.38 -0.02 0.38 16 41 H 0.13 -0.18 8.13 -2.39 -0.02 -0.20 16 42 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -79.35 357.89 3.10 -76.25 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: 0.31 Total: 27.46 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: 8.02 Total: 20.10 kcal Atomic # 7 Polarization: -129.89 SS G_CDS: -5.82 Total: -135.71 kcal Atomic # 8 Polarization: -35.56 SS G_CDS: -1.44 Total: -36.99 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -79.35 3.10 -76.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677519870.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.589 kcal (2) G-P(sol) polarization free energy of solvation -79.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds