Wall clock time and date at job start Tue Mar 31 2020 03:07:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42897 * 1
3 3 C 1.42907 * 113.99991 * 2 1
4 4 C 1.52996 * 109.47061 * 180.02562 * 3 2 1
5 5 N 1.46503 * 109.47171 * 180.02562 * 4 3 2
6 6 C 1.34258 * 125.75943 * 124.99931 * 5 4 3
7 7 C 1.38046 * 107.41737 * 180.02562 * 6 5 4
8 8 C 1.47426 * 126.40996 * 179.97438 * 7 6 5
9 9 O 1.21605 * 120.00176 * 359.97438 * 8 7 6
10 10 N 1.34778 * 119.99450 * 180.02562 * 8 7 6
11 11 C 1.46503 * 119.99700 * 180.02562 * 10 8 7
12 12 C 1.52997 * 109.47014 * 179.97438 * 11 10 8
13 13 H 1.09001 * 109.47502 * 65.00049 * 12 11 10
14 14 C 1.53006 * 109.47127 * 184.99892 * 12 11 10
15 15 N 1.46500 * 109.47007 * 304.99673 * 12 11 10
16 16 C 1.36944 * 120.00017 * 155.00515 * 15 12 11
17 17 H 1.07997 * 119.99813 * 359.97438 * 16 15 12
18 18 C 1.38806 * 119.99784 * 180.02562 * 16 15 12
19 19 N 1.31621 * 120.00406 * 359.97438 * 18 16 15
20 20 Si 1.86804 * 119.99911 * 179.97438 * 18 16 15
21 21 H 1.48498 * 109.46917 * 359.97438 * 20 18 16
22 22 H 1.48502 * 109.47165 * 119.99626 * 20 18 16
23 23 H 1.48493 * 109.47310 * 240.00027 * 20 18 16
24 24 C 1.41287 * 107.16746 * 0.23914 * 7 6 5
25 25 N 1.30448 * 108.02558 * 359.59333 * 24 7 6
26 26 H 1.09003 * 109.47120 * 300.00108 * 1 2 3
27 27 H 1.08993 * 109.47462 * 60.00142 * 1 2 3
28 28 H 1.08999 * 109.46994 * 180.02562 * 1 2 3
29 29 H 1.08999 * 109.47149 * 60.00090 * 3 2 1
30 30 H 1.08998 * 109.46889 * 300.00284 * 3 2 1
31 31 H 1.08999 * 109.47311 * 59.99889 * 4 3 2
32 32 H 1.09004 * 109.46870 * 299.99563 * 4 3 2
33 33 H 1.07998 * 126.28646 * 0.02562 * 6 5 4
34 34 H 0.96997 * 120.00085 * 359.97438 * 10 8 7
35 35 H 1.08998 * 109.47549 * 59.99317 * 11 10 8
36 36 H 1.08998 * 109.46987 * 299.99219 * 11 10 8
37 37 H 1.09001 * 109.47002 * 299.99574 * 14 12 11
38 38 H 1.08993 * 109.46955 * 60.00011 * 14 12 11
39 39 H 1.09000 * 109.47050 * 179.97438 * 14 12 11
40 40 H 0.96995 * 120.00293 * 334.99551 * 15 12 11
41 41 H 0.96997 * 120.00066 * 180.02562 * 19 18 16
42 42 H 1.08001 * 125.98221 * 179.73587 * 24 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1847 -0.0006
5 7 4.1313 2.5231 0.0000
6 6 5.0216 2.9851 0.8924
7 6 5.3264 4.2839 0.5376
8 6 6.2616 5.1851 1.2352
9 8 6.8508 4.8005 2.2270
10 7 6.4628 6.4355 0.7741
11 6 7.3925 7.3309 1.4670
12 6 7.4367 8.6786 0.7442
13 1 6.4626 9.1621 0.8170
14 6 8.4982 9.5702 1.3920
15 7 7.7722 8.4658 -0.6659
16 6 7.3877 9.3831 -1.6072
17 1 6.8369 10.2632 -1.3101
18 6 7.7051 9.1811 -2.9433
19 7 8.3760 8.1082 -3.3055
20 14 7.1801 10.4320 -4.2275
21 1 6.4436 11.5397 -3.5673
22 1 8.3819 10.9741 -4.9108
23 1 6.2969 9.7765 -5.2251
24 6 4.5696 4.5897 -0.6156
25 7 3.8680 3.5356 -0.9293
26 1 -0.3633 0.5139 0.8900
27 1 -0.3634 0.5138 -0.8899
28 1 -0.3633 -1.0277 0.0005
29 1 1.6886 1.8464 0.8900
30 1 1.6885 1.8464 -0.8900
31 1 3.8567 0.6439 -0.8908
32 1 3.8574 0.6437 0.8892
33 1 5.4251 2.4406 1.7333
34 1 5.9925 6.7422 -0.0168
35 1 8.3886 6.8882 1.4709
36 1 7.0570 7.4795 2.4933
37 1 8.2486 9.7286 2.4411
38 1 9.4723 9.0867 1.3192
39 1 8.5300 10.5302 0.8767
40 1 8.2667 7.6752 -0.9328
41 1 8.5981 7.9672 -4.2391
42 1 4.5732 5.5305 -1.1460
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001690642684.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:07:26
Heat of formation + Delta-G solvation = 4.325125 kcal
Electronic energy + Delta-G solvation = -23226.860077 eV
Core-core repulsion = 19630.302457 eV
Total energy + Delta-G solvation = -3596.557621 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 296.164 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-41.38676 -38.88828 -38.33034 -36.20737 -34.14644 -33.40335 -31.81334 -30.47193
-29.52129 -28.63543 -26.81150 -25.73917 -23.83646 -23.57310 -22.36280 -20.78215
-20.09145 -19.61565 -17.97311 -17.31317 -16.79370 -16.63397 -15.82489 -15.54090
-15.49102 -15.13120 -14.89565 -14.37447 -14.18938 -13.84649 -13.62136 -13.45904
-13.00533 -12.76472 -12.44856 -12.17671 -12.06617 -12.06064 -11.87883 -11.77036
-11.36028 -10.99914 -10.87974 -10.73728 -10.31311 -10.17920 -9.97527 -9.70831
-9.65098 -9.53582 -8.97895 -8.79988 -8.42163 -7.02527 -5.80170 -3.10425
1.53353 2.05532 2.27603 3.36393 3.40785 3.47069 3.49160 3.70827
3.79906 4.27082 4.47577 4.55692 4.71210 4.76033 4.85087 4.90533
4.92959 5.18292 5.22646 5.25768 5.29379 5.47693 5.49868 5.52348
5.61760 5.82157 5.99022 6.13461 6.21903 6.37006 6.43595 6.55807
6.59521 6.73183 6.78563 6.91277 7.09264 7.50184 7.67735 8.07416
8.37219 8.70054 9.49249 10.04620 10.40311 11.41638
Molecular weight = 296.16amu
Principal moments of inertia in cm(-1)
A = 0.015753 B = 0.003140 C = 0.002728
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1776.990991 B = 8914.770511 C =10260.267799
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.034 3.966
2 O -0.391 6.391
3 C 0.051 3.949
4 C 0.136 3.864
5 N -0.366 5.366
6 C 0.125 3.875
7 C -0.283 4.283
8 C 0.591 3.409
9 O -0.566 6.566
10 N -0.707 5.707
11 C 0.117 3.883
12 C 0.159 3.841
13 H 0.053 0.947
14 C -0.162 4.162
15 N -0.724 5.724
16 C -0.241 4.241
17 H 0.071 0.929
18 C -0.011 4.011
19 N -0.929 5.929
20 Si 0.904 3.096
21 H -0.281 1.281
22 H -0.292 1.292
23 H -0.292 1.292
24 C 0.092 3.908
25 N -0.299 5.299
26 H 0.043 0.957
27 H 0.045 0.955
28 H 0.089 0.911
29 H 0.056 0.944
30 H 0.068 0.932
31 H 0.098 0.902
32 H 0.107 0.893
33 H 0.188 0.812
34 H 0.409 0.591
35 H 0.063 0.937
36 H 0.063 0.937
37 H 0.039 0.961
38 H 0.049 0.951
39 H 0.057 0.943
40 H 0.385 0.615
41 H 0.255 0.745
42 H 0.195 0.805
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.877 -13.340 8.998 20.609
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.062 4.062
2 O -0.310 6.310
3 C -0.027 4.027
4 C 0.014 3.986
5 N -0.147 5.147
6 C -0.025 4.025
7 C -0.298 4.298
8 C 0.378 3.622
9 O -0.447 6.447
10 N -0.358 5.358
11 C -0.007 4.007
12 C 0.049 3.951
13 H 0.071 0.929
14 C -0.223 4.223
15 N -0.366 5.366
16 C -0.373 4.373
17 H 0.089 0.911
18 C -0.207 4.207
19 N -0.577 5.577
20 Si 0.736 3.264
21 H -0.206 1.206
22 H -0.220 1.220
23 H -0.219 1.219
24 C -0.096 4.096
25 N -0.119 5.119
26 H 0.062 0.938
27 H 0.063 0.937
28 H 0.108 0.892
29 H 0.074 0.926
30 H 0.086 0.914
31 H 0.116 0.884
32 H 0.126 0.874
33 H 0.204 0.796
34 H 0.246 0.754
35 H 0.082 0.918
36 H 0.082 0.918
37 H 0.058 0.942
38 H 0.068 0.932
39 H 0.076 0.924
40 H 0.220 0.780
41 H 0.065 0.935
42 H 0.212 0.788
Dipole moment (debyes) X Y Z Total
from point charges -13.347 -14.267 8.762 21.412
hybrid contribution 0.197 1.202 -0.782 1.447
sum -13.150 -13.065 7.980 20.182
Atomic orbital electron populations
1.22776 0.79982 1.03053 1.00424 1.87774 1.20556 1.27002 1.95621
1.22665 0.92567 0.85267 1.02187 1.21439 0.92613 0.78909 1.05592
1.48297 1.33302 1.12010 1.21080 1.22930 0.90985 0.94375 0.94210
1.20353 1.09923 0.96281 1.03220 1.17194 0.80605 0.81261 0.83151
1.90724 1.50924 1.76049 1.26979 1.45740 1.45532 1.12644 1.31869
1.21668 0.93054 0.90611 0.95377 1.20518 0.96917 0.91690 0.86016
0.92862 1.22361 1.00215 1.01206 0.98518 1.42488 1.67310 1.26753
1.00078 1.19259 1.29259 1.01376 0.87358 0.91082 1.24739 1.00945
0.97834 0.97184 1.69675 1.44218 1.27438 1.16328 0.86165 0.77692
0.80611 0.81966 1.20596 1.21962 1.21889 1.24262 0.92853 0.97880
0.94573 1.77180 1.24875 0.96703 1.13109 0.93828 0.93655 0.89212
0.92570 0.91355 0.88393 0.87444 0.79553 0.75450 0.91832 0.91846
0.94205 0.93208 0.92374 0.78040 0.93523 0.78797
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.21 11.01 101.05 1.11 1.32 16
2 O -0.39 -3.38 10.70 -35.23 -0.38 -3.76 16
3 C 0.05 0.43 6.11 37.16 0.23 0.66 16
4 C 0.14 1.14 6.86 -4.04 -0.03 1.11 16
5 N -0.37 -4.28 3.65 -60.81 -0.22 -4.50 16
6 C 0.13 1.54 11.25 -16.56 -0.19 1.36 16
7 C -0.28 -4.20 6.13 -105.07 -0.64 -4.85 16
8 C 0.59 10.18 7.81 -12.52 -0.10 10.08 16
9 O -0.57 -11.14 16.90 5.27 0.09 -11.05 16
10 N -0.71 -12.00 5.38 -61.38 -0.33 -12.33 16
11 C 0.12 2.01 5.23 -4.04 -0.02 1.99 16
12 C 0.16 2.95 3.05 -67.93 -0.21 2.75 16
13 H 0.05 0.98 8.08 -51.93 -0.42 0.57 16
14 C -0.16 -2.80 9.49 37.16 0.35 -2.44 16
15 N -0.72 -16.80 4.56 -53.42 -0.24 -17.05 16
16 C -0.24 -6.27 9.93 -15.06 -0.15 -6.42 16
17 H 0.07 1.81 7.83 -52.49 -0.41 1.39 16
18 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16
19 N -0.93 -27.01 13.06 55.49 0.72 -26.28 16
20 Si 0.90 21.65 29.55 -169.99 -5.02 16.63 16
21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16
22 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16
23 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16
24 C 0.09 1.32 11.50 -16.98 -0.20 1.13 16
25 N -0.30 -4.21 12.33 30.86 0.38 -3.83 16
26 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16
27 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16
28 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16
29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16
30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
31 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16
32 H 0.11 0.64 8.06 -51.93 -0.42 0.22 16
33 H 0.19 1.81 8.06 -52.49 -0.42 1.39 16
34 H 0.41 6.93 7.09 -40.82 -0.29 6.64 16
35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16
36 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16
37 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16
38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16
39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16
40 H 0.39 9.78 7.80 -40.82 -0.32 9.46 16
41 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16
42 H 0.20 2.55 7.50 -52.49 -0.39 2.16 16
LS Contribution 363.62 15.07 5.48 5.48
Total: -1.00 -32.44 363.62 -5.91 -38.35
By element:
Atomic # 1 Polarization: 18.51 SS G_CDS: -6.46 Total: 12.05 kcal
Atomic # 6 Polarization: 6.22 SS G_CDS: 0.07 Total: 6.29 kcal
Atomic # 7 Polarization: -64.31 SS G_CDS: 0.31 Total: -64.00 kcal
Atomic # 8 Polarization: -14.52 SS G_CDS: -0.29 Total: -14.81 kcal
Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal
Total LS contribution 5.48 Total: 5.48 kcal
Total: -32.44 -5.91 -38.35 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001690642684.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 42.679 kcal
(2) G-P(sol) polarization free energy of solvation -32.441 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.239 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.914 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.354 kcal
(6) G-S(sol) free energy of system = (1) + (5) 4.325 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds