Wall clock time and date at job start Tue Mar 31 2020 03:07:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42897 * 1
3 3 C 1.42907 * 113.99991 * 2 1
4 4 C 1.52996 * 109.47061 * 180.02562 * 3 2 1
5 5 N 1.46503 * 109.47171 * 180.02562 * 4 3 2
6 6 C 1.34258 * 125.75943 * 124.99931 * 5 4 3
7 7 C 1.38046 * 107.41737 * 180.02562 * 6 5 4
8 8 C 1.47426 * 126.40996 * 179.97438 * 7 6 5
9 9 O 1.21605 * 120.00176 * 359.97438 * 8 7 6
10 10 N 1.34778 * 119.99450 * 180.02562 * 8 7 6
11 11 C 1.46503 * 119.99700 * 180.02562 * 10 8 7
12 12 C 1.52997 * 109.47014 * 179.97438 * 11 10 8
13 13 H 1.09001 * 109.47502 * 65.00049 * 12 11 10
14 14 C 1.53006 * 109.47127 * 184.99892 * 12 11 10
15 15 N 1.46500 * 109.47007 * 304.99673 * 12 11 10
16 16 C 1.36944 * 120.00017 * 155.00515 * 15 12 11
17 17 H 1.07997 * 119.99813 * 359.97438 * 16 15 12
18 18 C 1.38806 * 119.99784 * 180.02562 * 16 15 12
19 19 N 1.31621 * 120.00406 * 359.97438 * 18 16 15
20 20 Si 1.86804 * 119.99911 * 179.97438 * 18 16 15
21 21 H 1.48498 * 109.46917 * 359.97438 * 20 18 16
22 22 H 1.48502 * 109.47165 * 119.99626 * 20 18 16
23 23 H 1.48493 * 109.47310 * 240.00027 * 20 18 16
24 24 C 1.41287 * 107.16746 * 0.23914 * 7 6 5
25 25 N 1.30448 * 108.02558 * 359.59333 * 24 7 6
26 26 H 1.09003 * 109.47120 * 300.00108 * 1 2 3
27 27 H 1.08993 * 109.47462 * 60.00142 * 1 2 3
28 28 H 1.08999 * 109.46994 * 180.02562 * 1 2 3
29 29 H 1.08999 * 109.47149 * 60.00090 * 3 2 1
30 30 H 1.08998 * 109.46889 * 300.00284 * 3 2 1
31 31 H 1.08999 * 109.47311 * 59.99889 * 4 3 2
32 32 H 1.09004 * 109.46870 * 299.99563 * 4 3 2
33 33 H 1.07998 * 126.28646 * 0.02562 * 6 5 4
34 34 H 0.96997 * 120.00085 * 359.97438 * 10 8 7
35 35 H 1.08998 * 109.47549 * 59.99317 * 11 10 8
36 36 H 1.08998 * 109.46987 * 299.99219 * 11 10 8
37 37 H 1.09001 * 109.47002 * 299.99574 * 14 12 11
38 38 H 1.08993 * 109.46955 * 60.00011 * 14 12 11
39 39 H 1.09000 * 109.47050 * 179.97438 * 14 12 11
40 40 H 0.96995 * 120.00293 * 334.99551 * 15 12 11
41 41 H 0.96997 * 120.00066 * 180.02562 * 19 18 16
42 42 H 1.08001 * 125.98221 * 179.73587 * 24 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1847 -0.0006
5 7 4.1313 2.5231 0.0000
6 6 5.0216 2.9851 0.8924
7 6 5.3264 4.2839 0.5376
8 6 6.2616 5.1851 1.2352
9 8 6.8508 4.8005 2.2270
10 7 6.4628 6.4355 0.7741
11 6 7.3925 7.3309 1.4670
12 6 7.4367 8.6786 0.7442
13 1 6.4626 9.1621 0.8170
14 6 8.4982 9.5702 1.3920
15 7 7.7722 8.4658 -0.6659
16 6 7.3877 9.3831 -1.6072
17 1 6.8369 10.2632 -1.3101
18 6 7.7051 9.1811 -2.9433
19 7 8.3760 8.1082 -3.3055
20 14 7.1801 10.4320 -4.2275
21 1 6.4436 11.5397 -3.5673
22 1 8.3819 10.9741 -4.9108
23 1 6.2969 9.7765 -5.2251
24 6 4.5696 4.5897 -0.6156
25 7 3.8680 3.5356 -0.9293
26 1 -0.3633 0.5139 0.8900
27 1 -0.3634 0.5138 -0.8899
28 1 -0.3633 -1.0277 0.0005
29 1 1.6886 1.8464 0.8900
30 1 1.6885 1.8464 -0.8900
31 1 3.8567 0.6439 -0.8908
32 1 3.8574 0.6437 0.8892
33 1 5.4251 2.4406 1.7333
34 1 5.9925 6.7422 -0.0168
35 1 8.3886 6.8882 1.4709
36 1 7.0570 7.4795 2.4933
37 1 8.2486 9.7286 2.4411
38 1 9.4723 9.0867 1.3192
39 1 8.5300 10.5302 0.8767
40 1 8.2667 7.6752 -0.9328
41 1 8.5981 7.9672 -4.2391
42 1 4.5732 5.5305 -1.1460
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001690642684.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:07:26
Heat of formation + Delta-G solvation = -19.324671 kcal
Electronic energy + Delta-G solvation = -23227.885609 eV
Core-core repulsion = 19630.302457 eV
Total energy + Delta-G solvation = -3597.583153 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 296.164 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-42.41929 -40.21460 -38.98115 -37.80093 -35.20910 -34.86946 -33.52261 -31.51309
-30.69734 -30.14549 -27.56498 -26.89070 -25.62901 -24.49249 -23.56134 -21.82556
-21.52286 -20.84687 -19.37992 -18.84724 -17.64746 -17.35133 -16.99376 -16.79336
-16.52830 -16.42239 -16.07406 -15.68222 -15.39660 -15.14515 -15.03304 -14.60951
-14.26155 -13.85663 -13.80741 -13.57020 -13.34477 -13.05593 -13.02182 -12.79503
-12.71788 -12.46033 -12.35479 -12.10391 -12.01205 -11.65666 -11.59551 -10.98487
-10.85867 -10.78294 -10.63934 -10.06317 -9.62917 -8.97842 -7.87760 -5.16299
0.50924 1.12268 1.20131 1.51146 1.52780 1.61273 2.42053 2.52751
2.60919 2.72603 3.46301 3.51288 3.79447 3.85412 3.86198 3.95130
4.05561 4.15031 4.19105 4.30818 4.45016 4.46335 4.48986 4.62502
4.64575 4.70348 4.72622 4.81045 4.82240 4.96027 5.11583 5.31301
5.35104 5.49062 5.61124 5.68048 5.78478 6.01722 6.32953 6.45344
6.72520 7.35327 7.40523 8.13618 8.37938 9.35037
Molecular weight = 296.16amu
Principal moments of inertia in cm(-1)
A = 0.015753 B = 0.003140 C = 0.002728
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1776.990991 B = 8914.770511 C =10260.267799
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 O -0.404 6.404
3 C 0.057 3.943
4 C 0.130 3.870
5 N -0.357 5.357
6 C 0.143 3.857
7 C -0.312 4.312
8 C 0.591 3.409
9 O -0.594 6.594
10 N -0.708 5.708
11 C 0.126 3.874
12 C 0.158 3.842
13 H 0.061 0.939
14 C -0.155 4.155
15 N -0.731 5.731
16 C -0.229 4.229
17 H 0.079 0.921
18 C -0.071 4.071
19 N -0.966 5.966
20 Si 0.964 3.036
21 H -0.266 1.266
22 H -0.301 1.301
23 H -0.297 1.297
24 C 0.087 3.913
25 N -0.319 5.319
26 H 0.051 0.949
27 H 0.046 0.954
28 H 0.105 0.895
29 H 0.058 0.942
30 H 0.054 0.946
31 H 0.103 0.897
32 H 0.139 0.861
33 H 0.216 0.784
34 H 0.409 0.591
35 H 0.050 0.950
36 H 0.082 0.918
37 H 0.074 0.926
38 H 0.041 0.959
39 H 0.044 0.956
40 H 0.373 0.627
41 H 0.248 0.752
42 H 0.196 0.804
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.020 -13.745 10.232 22.140
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 O -0.322 6.322
3 C -0.021 4.021
4 C 0.010 3.990
5 N -0.136 5.136
6 C -0.009 4.009
7 C -0.326 4.326
8 C 0.380 3.620
9 O -0.477 6.477
10 N -0.358 5.358
11 C 0.001 3.999
12 C 0.050 3.950
13 H 0.079 0.921
14 C -0.215 4.215
15 N -0.372 5.372
16 C -0.361 4.361
17 H 0.096 0.904
18 C -0.264 4.264
19 N -0.617 5.617
20 Si 0.795 3.205
21 H -0.190 1.190
22 H -0.229 1.229
23 H -0.224 1.224
24 C -0.101 4.101
25 N -0.139 5.139
26 H 0.069 0.931
27 H 0.065 0.935
28 H 0.124 0.876
29 H 0.077 0.923
30 H 0.072 0.928
31 H 0.121 0.879
32 H 0.156 0.844
33 H 0.233 0.767
34 H 0.245 0.755
35 H 0.069 0.931
36 H 0.100 0.900
37 H 0.092 0.908
38 H 0.061 0.939
39 H 0.063 0.937
40 H 0.205 0.795
41 H 0.057 0.943
42 H 0.213 0.787
Dipole moment (debyes) X Y Z Total
from point charges -14.535 -14.649 10.025 22.942
hybrid contribution 0.480 1.249 -1.068 1.712
sum -14.055 -13.399 8.956 21.385
Atomic orbital electron populations
1.22970 0.78727 1.04306 1.00895 1.87749 1.21971 1.26847 1.95674
1.22536 0.92606 0.85307 1.01607 1.21766 0.92548 0.77328 1.07392
1.48533 1.32629 1.12471 1.20015 1.23337 0.89831 0.93529 0.94219
1.20271 1.10952 0.97289 1.04128 1.17468 0.80454 0.81266 0.82779
1.90696 1.52248 1.76511 1.28263 1.45745 1.45396 1.12858 1.31810
1.21565 0.92656 0.89609 0.96058 1.20698 0.97543 0.92920 0.83842
0.92144 1.22237 0.99206 0.99777 1.00314 1.42619 1.67030 1.25818
1.01763 1.19598 1.27352 1.01330 0.87800 0.90354 1.25423 1.02168
0.99619 0.99175 1.69823 1.46460 1.29432 1.16016 0.85202 0.76798
0.78934 0.79579 1.19021 1.22932 1.22420 1.24318 0.92914 0.98229
0.94594 1.77139 1.25304 0.97233 1.14186 0.93052 0.93511 0.87642
0.92347 0.92789 0.87927 0.84354 0.76721 0.75527 0.93115 0.89966
0.90762 0.93933 0.93688 0.79538 0.94348 0.78702
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.28 11.01 113.37 1.25 1.53 16
2 O -0.40 -6.30 10.70 -148.98 -1.59 -7.89 16
3 C 0.06 0.88 6.11 71.98 0.44 1.32 16
4 C 0.13 1.89 6.86 86.38 0.59 2.48 16
5 N -0.36 -7.74 3.65 -346.30 -1.26 -9.01 16
6 C 0.14 3.26 11.25 84.28 0.95 4.21 16
7 C -0.31 -9.06 6.13 -20.15 -0.12 -9.19 16
8 C 0.59 20.15 7.81 86.66 0.68 20.83 16
9 O -0.59 -22.97 16.90 -4.05 -0.07 -23.04 16
10 N -0.71 -23.85 5.38 -466.37 -2.51 -26.35 16
11 C 0.13 4.18 5.23 86.38 0.45 4.63 16
12 C 0.16 5.71 3.05 44.99 0.14 5.84 16
13 H 0.06 2.12 8.08 -2.39 -0.02 2.10 16
14 C -0.16 -5.07 9.49 71.98 0.68 -4.39 16
15 N -0.73 -33.85 4.56 -322.93 -1.47 -35.32 16
16 C -0.23 -11.78 9.93 84.03 0.83 -10.94 16
17 H 0.08 3.87 7.83 -2.91 -0.02 3.85 16
18 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16
19 N -0.97 -57.22 13.06 21.65 0.28 -56.93 16
20 Si 0.96 44.73 29.55 68.60 2.03 46.76 16
21 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16
22 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16
23 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16
24 C 0.09 2.49 11.50 85.65 0.99 3.47 16
25 N -0.32 -8.79 12.33 -56.28 -0.69 -9.49 16
26 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16
27 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16
28 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16
29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16
30 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16
31 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16
32 H 0.14 1.19 8.06 -2.38 -0.02 1.17 16
33 H 0.22 3.54 8.06 -2.91 -0.02 3.52 16
34 H 0.41 13.90 7.09 -92.71 -0.66 13.24 16
35 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16
36 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16
37 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16
38 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16
39 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16
40 H 0.37 19.17 7.80 -92.71 -0.72 18.45 16
41 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16
42 H 0.20 5.27 7.50 -2.91 -0.02 5.25 16
Total: -1.00 -69.00 363.62 1.70 -67.30
By element:
Atomic # 1 Polarization: 37.98 SS G_CDS: -0.35 Total: 37.63 kcal
Atomic # 6 Polarization: 9.01 SS G_CDS: 7.34 Total: 16.36 kcal
Atomic # 7 Polarization: -131.45 SS G_CDS: -5.66 Total: -137.11 kcal
Atomic # 8 Polarization: -29.27 SS G_CDS: -1.66 Total: -30.93 kcal
Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal
Total: -69.00 1.70 -67.30 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001690642684.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.976 kcal
(2) G-P(sol) polarization free energy of solvation -68.999 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.023 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.698 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.301 kcal
(6) G-S(sol) free energy of system = (1) + (5) -19.325 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds