Wall clock time and date at job start Tue Mar 31 2020 03:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00134 * 2 1 4 4 H 1.48496 * 109.47294 * 270.00352 * 3 2 1 5 5 H 1.48503 * 109.46797 * 30.00268 * 3 2 1 6 6 H 1.48500 * 109.47035 * 150.00068 * 3 2 1 7 7 C 1.38811 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00295 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00146 * 359.97438 * 7 2 1 10 10 C 1.47290 * 125.79079 * 0.02562 * 9 7 2 11 11 C 1.54325 * 107.30599 * 178.92205 * 10 9 7 12 12 C 1.55154 * 102.94303 * 337.81911 * 11 10 9 13 13 H 1.09008 * 111.00345 * 277.42446 * 12 11 10 14 14 C 1.52999 * 111.03901 * 153.59308 * 12 11 10 15 15 C 1.53001 * 109.47357 * 181.33347 * 14 12 11 16 16 N 1.46494 * 109.47153 * 179.97438 * 15 14 12 17 17 C 1.34782 * 119.99883 * 179.97438 * 16 15 14 18 18 O 1.21284 * 119.99923 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99776 * 180.02562 * 17 16 15 20 20 H 1.08993 * 109.48335 * 54.99314 * 19 17 16 21 21 C 1.53098 * 109.47684 * 294.96710 * 19 17 16 22 22 C 1.53177 * 109.16298 * 182.41094 * 21 19 17 23 23 C 1.53180 * 109.03501 * 56.98626 * 22 21 19 24 24 C 1.53101 * 109.16201 * 303.01692 * 23 22 21 25 25 O 1.42898 * 109.42141 * 57.60558 * 24 23 22 26 26 C 1.47425 * 125.65179 * 180.02562 * 9 7 2 27 27 H 0.96999 * 120.00175 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.85762 * 59.49821 * 10 9 7 29 29 H 1.08995 * 110.00297 * 298.42768 * 10 9 7 30 30 H 1.09002 * 110.72180 * 219.45147 * 11 10 9 31 31 H 1.08994 * 110.87038 * 96.25177 * 11 10 9 32 32 H 1.09005 * 109.46636 * 301.32761 * 14 12 11 33 33 H 1.08992 * 109.47502 * 61.32488 * 14 12 11 34 34 H 1.09003 * 109.46648 * 299.99860 * 15 14 12 35 35 H 1.09000 * 109.47215 * 59.98952 * 15 14 12 36 36 H 0.97001 * 120.00138 * 359.97438 * 16 15 14 37 37 H 1.08988 * 109.52443 * 302.32137 * 21 19 17 38 38 H 1.09005 * 109.51990 * 62.51178 * 21 19 17 39 39 H 1.08992 * 109.54524 * 176.85423 * 22 21 19 40 40 H 1.09004 * 109.54080 * 297.11965 * 22 21 19 41 41 H 1.08994 * 109.52433 * 62.92133 * 23 22 21 42 42 H 1.09003 * 109.51946 * 183.05493 * 23 22 21 43 43 H 1.08995 * 109.47741 * 177.59472 * 24 23 22 44 44 H 1.09003 * 109.48034 * 297.63062 * 24 23 22 45 45 H 1.09002 * 110.36696 * 85.26297 * 26 9 7 46 46 H 1.08995 * 110.36608 * 323.05133 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1397 -2.5367 -0.0005 11 6 -0.4478 -4.0487 -0.0283 12 6 0.8538 -4.6579 -0.6131 13 1 0.8588 -4.5974 -1.7015 14 6 1.0421 -6.1027 -0.1463 15 6 2.3499 -6.6563 -0.7156 16 7 2.5305 -8.0395 -0.2681 17 6 3.6207 -8.7342 -0.6493 18 8 4.4519 -8.2144 -1.3633 19 6 3.8061 -10.1573 -0.1895 20 1 2.9297 -10.7448 -0.4628 21 6 3.9845 -10.1833 1.3309 22 6 4.2324 -11.6255 1.7835 23 6 5.4557 -12.1775 1.0452 24 6 5.2206 -12.0745 -0.4642 25 8 4.9657 -10.7125 -0.8135 26 6 1.9335 -3.7312 -0.0005 27 1 -0.4850 0.8400 -0.0004 28 1 -0.5607 -2.0564 -0.8839 29 1 -0.5599 -2.0893 0.9002 30 1 -1.2974 -4.2573 -0.6785 31 1 -0.6320 -4.4259 0.9776 32 1 1.0793 -6.1306 0.9428 33 1 0.2074 -6.7095 -0.4969 34 1 2.3127 -6.6282 -1.8046 35 1 3.1846 -6.0493 -0.3649 36 1 1.8654 -8.4553 0.3027 37 1 4.8365 -9.5629 1.6083 38 1 3.0830 -9.8011 1.8100 39 1 4.4157 -11.6442 2.8577 40 1 3.3598 -12.2359 1.5505 41 1 6.3375 -11.5974 1.3168 42 1 5.6071 -13.2213 1.3207 43 1 6.1053 -12.4264 -0.9947 44 1 4.3627 -12.6873 -0.7411 45 1 2.1668 -4.0420 1.0178 46 1 2.8339 -3.7400 -0.6148 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691880052.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:21 Heat of formation + Delta-G solvation = -75.822363 kcal Electronic energy + Delta-G solvation = -23922.599958 eV Core-core repulsion = 20426.107225 eV Total energy + Delta-G solvation = -3496.492733 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.46787 -38.75291 -37.71274 -35.24027 -34.05377 -33.05310 -31.95265 -30.60977 -28.97419 -26.94472 -25.70630 -24.54429 -24.21785 -22.31421 -21.03734 -20.56040 -19.96742 -19.44095 -17.63629 -16.99637 -16.70214 -16.03400 -15.77075 -15.32980 -15.09235 -14.76590 -14.68137 -14.47632 -14.11745 -13.68399 -13.52660 -13.07920 -12.98728 -12.44567 -12.23788 -11.94461 -11.90404 -11.80043 -11.67208 -11.51380 -11.48459 -11.06818 -10.87863 -10.84026 -10.73600 -10.11176 -10.03554 -9.93897 -9.88739 -9.77305 -9.64437 -9.55973 -9.11332 -8.55849 -6.77469 -5.66670 -2.99458 2.49956 2.66711 3.43679 3.48575 3.50453 3.73205 4.27090 4.35414 4.37565 4.51701 4.54468 4.66014 4.72088 4.93260 4.98882 5.10724 5.13523 5.24172 5.30299 5.33894 5.46466 5.52048 5.57602 5.59720 5.63583 5.68035 5.77580 5.82234 5.90014 6.03747 6.13711 6.22730 6.37136 6.41328 6.58060 6.62879 6.74587 6.77308 7.00745 7.38065 7.61174 7.67010 7.87103 8.12589 8.30972 9.27168 9.87859 10.54648 11.45463 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.030206 B = 0.002448 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.750199 B =11433.918628 C =11809.445103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.011 4.011 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.607 5.607 10 C 0.176 3.824 11 C -0.138 4.138 12 C -0.101 4.101 13 H 0.076 0.924 14 C -0.115 4.115 15 C 0.118 3.882 16 N -0.727 5.727 17 C 0.516 3.484 18 O -0.517 6.517 19 C 0.075 3.925 20 H 0.082 0.918 21 C -0.147 4.147 22 C -0.121 4.121 23 C -0.160 4.160 24 C 0.059 3.941 25 O -0.354 6.354 26 C 0.139 3.861 27 H 0.251 0.749 28 H 0.045 0.955 29 H 0.041 0.959 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.398 0.602 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.099 0.901 44 H 0.051 0.949 45 H 0.017 0.983 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.267 -26.905 3.192 27.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.207 4.207 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.176 4.176 12 C -0.121 4.121 13 H 0.094 0.906 14 C -0.153 4.153 15 C -0.004 4.004 16 N -0.380 5.380 17 C 0.300 3.700 18 O -0.391 6.391 19 C 0.014 3.986 20 H 0.100 0.900 21 C -0.185 4.185 22 C -0.158 4.158 23 C -0.197 4.197 24 C -0.018 4.018 25 O -0.272 6.272 26 C 0.013 3.987 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.232 0.768 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.117 0.883 44 H 0.070 0.930 45 H 0.035 0.965 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.964 -26.157 2.535 26.577 hybrid contribution -0.100 0.520 0.514 0.738 sum 3.864 -25.637 3.048 26.106 Atomic orbital electron populations 1.69967 1.04872 1.24920 1.57408 1.24801 0.95732 0.97656 1.02469 0.86118 0.78580 0.83519 0.77573 1.21619 1.21722 1.20709 1.19081 0.90448 0.82489 1.43374 0.90468 1.44549 1.01715 0.99955 1.87130 1.21170 0.84358 0.88362 1.00935 1.22893 0.95920 0.99477 0.99334 1.22273 0.97654 0.91934 1.00213 0.90572 1.21737 0.95706 0.96852 1.01044 1.21520 0.98847 0.80258 0.99814 1.45971 1.23757 1.15050 1.53233 1.20128 0.81813 0.87255 0.80830 1.90751 1.42307 1.70250 1.35786 1.21893 0.90495 0.92950 0.93276 0.90006 1.22158 1.03878 0.98446 0.94011 1.21588 0.98267 0.95310 1.00670 1.22232 0.99239 1.02028 0.96242 1.22665 1.01394 0.82857 0.94852 1.88085 1.44465 1.26482 1.68150 1.21607 0.94348 0.86126 0.96607 0.93845 0.93704 0.94098 0.92364 0.92589 0.91294 0.91649 0.91319 0.90789 0.76772 0.90181 0.90098 0.90865 0.91507 0.90741 0.90636 0.88335 0.93026 0.96545 0.94438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.67 10.33 55.49 0.57 -27.10 16 2 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 3 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.23 -6.47 10.28 -15.06 -0.15 -6.62 16 8 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 9 N -0.61 -15.88 3.40 -169.86 -0.58 -16.46 16 10 C 0.18 4.33 5.38 -2.92 -0.02 4.32 16 11 C -0.14 -2.50 6.42 -24.90 -0.16 -2.66 16 12 C -0.10 -1.68 3.07 -88.47 -0.27 -1.96 16 13 H 0.08 1.31 8.14 -51.92 -0.42 0.88 16 14 C -0.12 -1.40 4.85 -26.73 -0.13 -1.53 16 15 C 0.12 1.51 5.52 -4.04 -0.02 1.49 16 16 N -0.73 -7.61 5.52 -60.30 -0.33 -7.94 16 17 C 0.52 6.63 7.18 -10.98 -0.08 6.55 16 18 O -0.52 -9.31 16.51 -14.30 -0.24 -9.55 16 19 C 0.08 0.72 3.06 -27.83 -0.09 0.63 16 20 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 21 C -0.15 -1.07 5.37 -26.59 -0.14 -1.21 16 22 C -0.12 -0.67 6.03 -26.55 -0.16 -0.83 16 23 C -0.16 -0.95 6.14 -26.59 -0.16 -1.11 16 24 C 0.06 0.43 6.84 37.21 0.25 0.69 16 25 O -0.35 -4.11 9.94 -55.09 -0.55 -4.66 16 26 C 0.14 2.90 5.89 -2.53 -0.01 2.89 16 27 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.04 1.22 7.39 -51.93 -0.38 0.83 16 29 H 0.04 1.11 7.51 -51.93 -0.39 0.72 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.94 8.04 -51.93 -0.42 0.52 16 32 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 1.09 7.45 -51.93 -0.39 0.71 16 36 H 0.40 2.80 8.32 -40.82 -0.34 2.46 16 37 H 0.08 0.72 8.14 -51.94 -0.42 0.29 16 38 H 0.08 0.44 7.99 -51.93 -0.41 0.03 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.02 0.34 8.00 -51.93 -0.42 -0.07 16 46 H 0.04 0.78 8.06 -51.93 -0.42 0.36 16 LS Contribution 362.81 15.07 5.47 5.47 Total: -1.00 -35.15 362.81 -10.12 -45.28 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -8.21 Total: -2.86 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -1.24 Total: 0.23 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: -0.34 Total: -51.50 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -0.78 Total: -14.21 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.15 -10.12 -45.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691880052.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.544 kcal (2) G-P(sol) polarization free energy of solvation -35.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds